Wall clock time and date at job start Tue Mar 31 2020 22:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35649 * 117.00023 * 2 1 4 4 C 1.38633 * 120.14100 * 359.97438 * 3 2 1 5 5 C 1.38137 * 120.15957 * 179.97438 * 4 3 2 6 6 C 1.38409 * 120.43366 * 0.02989 * 5 4 3 7 7 C 1.38132 * 120.27298 * 0.02562 * 6 5 4 8 8 F 1.35104 * 120.08439 * 179.97438 * 7 6 5 9 9 C 1.39971 * 119.83662 * 0.23288 * 7 6 5 10 10 C 1.47384 * 120.21375 * 179.74592 * 9 7 6 11 11 O 1.21604 * 119.99854 * 90.00252 * 10 9 7 12 12 N 1.34773 * 120.00328 * 269.99932 * 10 9 7 13 13 C 1.46501 * 120.00272 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46883 * 324.99769 * 13 12 10 15 15 C 1.52990 * 109.47250 * 85.00290 * 13 12 10 16 16 C 1.53001 * 109.46885 * 205.00211 * 13 12 10 17 17 C 1.53001 * 109.47418 * 64.99907 * 16 13 12 18 18 C 1.52994 * 109.47215 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.47215 * 179.97438 * 18 17 16 20 20 N 1.46501 * 109.47483 * 180.02562 * 19 18 17 21 21 C 1.36938 * 120.00237 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99643 * 0.02562 * 21 20 19 23 23 C 1.38809 * 119.99988 * 179.97438 * 21 20 19 24 24 N 1.31623 * 120.00165 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99992 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47063 * 59.99909 * 25 23 21 27 27 H 1.48501 * 109.47008 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46824 * 299.99826 * 25 23 21 29 29 H 1.08998 * 109.46936 * 300.00595 * 1 2 3 30 30 H 1.08999 * 109.47093 * 60.00118 * 1 2 3 31 31 H 1.08994 * 109.47378 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.92036 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.78120 * 180.02562 * 5 4 3 34 34 H 1.07999 * 119.86467 * 180.02562 * 6 5 4 35 35 H 0.97000 * 119.99466 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.47176 * 59.99595 * 15 13 12 37 37 H 1.08995 * 109.47442 * 180.02562 * 15 13 12 38 38 H 1.09007 * 109.47321 * 299.99904 * 15 13 12 39 39 H 1.08996 * 109.46917 * 184.99952 * 16 13 12 40 40 H 1.08997 * 109.47397 * 304.99715 * 16 13 12 41 41 H 1.08996 * 109.47114 * 299.99925 * 17 16 13 42 42 H 1.09004 * 109.46847 * 60.00221 * 17 16 13 43 43 H 1.08996 * 109.47361 * 300.00193 * 18 17 16 44 44 H 1.08997 * 109.47090 * 60.00631 * 18 17 16 45 45 H 1.08996 * 109.47114 * 300.00345 * 19 18 17 46 46 H 1.09003 * 109.47264 * 60.00304 * 19 18 17 47 47 H 0.97005 * 119.99409 * 359.97438 * 20 19 18 48 48 H 0.96992 * 120.00072 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2927 2.3732 -0.0005 5 6 1.9194 3.6042 0.0000 6 6 3.3010 3.6875 0.0004 7 6 4.0679 2.5387 -0.0002 8 9 5.4162 2.6244 -0.0002 9 6 3.4447 1.2853 -0.0062 10 6 4.2549 0.0542 -0.0125 11 8 4.5894 -0.4589 1.0380 12 7 4.6250 -0.5030 -1.1825 13 6 5.4299 -1.7271 -1.1888 14 1 6.1221 -1.7110 -0.3470 15 6 4.5095 -2.9433 -1.0692 16 6 6.2193 -1.8116 -2.4967 17 6 7.2285 -0.6632 -2.5585 18 6 8.0183 -0.7481 -3.8661 19 6 9.0271 0.4006 -3.9281 20 7 9.7830 0.3197 -5.1805 21 6 10.7496 1.2491 -5.4581 22 1 10.9549 2.0415 -4.7536 23 6 11.4661 1.1721 -6.6444 24 7 11.2161 0.2060 -7.5028 25 14 12.7851 2.4395 -7.0229 26 1 13.8304 2.3959 -5.9690 27 1 13.3980 2.1375 -8.3414 28 1 12.1751 3.7930 -7.0594 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2141 2.3178 -0.0005 33 1 1.3275 4.5075 0.0000 34 1 3.7814 4.6548 0.0013 35 1 4.3584 -0.0935 -2.0205 36 1 3.8172 -2.9592 -1.9110 37 1 5.1083 -3.8540 -1.0735 38 1 3.9470 -2.8831 -0.1374 39 1 6.7488 -2.7633 -2.5407 40 1 5.5334 -1.7382 -3.3406 41 1 6.6991 0.2885 -2.5146 42 1 7.9146 -0.7367 -1.7147 43 1 8.5478 -1.6999 -3.9096 44 1 7.3326 -0.6749 -4.7101 45 1 8.4972 1.3521 -3.8848 46 1 9.7129 0.3279 -3.0841 47 1 9.5992 -0.3928 -5.8126 48 1 11.7166 0.1524 -8.3319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170943499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:48 Heat of formation + Delta-G solvation = -122.963624 kcal Electronic energy + Delta-G solvation = -28963.803206 eV Core-core repulsion = 24739.360018 eV Total energy + Delta-G solvation = -4224.443188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.14576 -41.63037 -40.40930 -38.32785 -37.98947 -36.84635 -34.81565 -33.33374 -32.41452 -31.22968 -31.02055 -28.84773 -28.28575 -26.03997 -25.33479 -23.70883 -23.32329 -22.23022 -22.02952 -21.61692 -19.69269 -19.14216 -18.64273 -18.18793 -17.64485 -17.11966 -16.94888 -16.70227 -16.50089 -16.35114 -16.20248 -15.73237 -15.61053 -15.41741 -15.24464 -15.02652 -14.62668 -14.23087 -14.11640 -13.86756 -13.46889 -13.44173 -13.26204 -13.06060 -12.91053 -12.85117 -12.84378 -12.48052 -12.38422 -12.28509 -12.21174 -12.04273 -11.90449 -11.86277 -11.53874 -11.43888 -11.09945 -10.94798 -10.18230 -10.04017 -9.44076 -9.03472 -7.97555 -5.27286 -0.17927 0.12479 1.39470 1.45336 1.49297 1.55593 2.01990 2.08583 2.42010 2.54451 3.21741 3.35161 3.48268 3.60449 3.84647 3.87031 3.98496 4.01180 4.02889 4.11553 4.23586 4.30857 4.35970 4.37937 4.40153 4.57054 4.61525 4.70625 4.73489 4.75913 4.84148 4.89052 4.94850 4.95605 4.97406 5.03796 5.08544 5.22501 5.22775 5.28549 5.39264 5.43486 5.49489 5.51537 5.56596 6.19712 6.25121 6.39366 7.07135 7.30672 8.06381 8.31121 9.25869 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002241 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.164153 B =12493.488604 C =13766.171920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.182 3.818 4 C -0.212 4.212 5 C -0.020 4.020 6 C -0.192 4.192 7 C 0.144 3.856 8 F -0.143 7.143 9 C -0.230 4.230 10 C 0.576 3.424 11 O -0.577 6.577 12 N -0.700 5.700 13 C 0.140 3.860 14 H 0.066 0.934 15 C -0.153 4.153 16 C -0.114 4.114 17 C -0.106 4.106 18 C -0.110 4.110 19 C 0.148 3.852 20 N -0.748 5.748 21 C -0.253 4.253 22 H 0.072 0.928 23 C -0.076 4.076 24 N -0.969 5.969 25 Si 0.977 3.023 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.176 0.824 33 H 0.183 0.817 34 H 0.162 0.838 35 H 0.410 0.590 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.015 0.985 46 H 0.012 0.988 47 H 0.375 0.625 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.570 2.124 16.521 34.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.134 3.866 4 C -0.230 4.230 5 C -0.038 4.038 6 C -0.210 4.210 7 C 0.124 3.876 8 F -0.122 7.122 9 C -0.235 4.235 10 C 0.362 3.638 11 O -0.456 6.456 12 N -0.350 5.350 13 C 0.036 3.964 14 H 0.084 0.916 15 C -0.211 4.211 16 C -0.152 4.152 17 C -0.144 4.144 18 C -0.148 4.148 19 C 0.022 3.978 20 N -0.391 5.391 21 C -0.384 4.384 22 H 0.090 0.910 23 C -0.268 4.268 24 N -0.620 5.620 25 Si 0.805 3.195 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.202 1.202 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.193 0.807 33 H 0.200 0.800 34 H 0.179 0.821 35 H 0.246 0.754 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.033 0.967 46 H 0.030 0.970 47 H 0.207 0.793 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -30.093 1.670 17.287 34.745 hybrid contribution 1.138 0.504 -0.794 1.477 sum -28.955 2.173 16.493 33.393 Atomic orbital electron populations 1.23518 0.74981 1.06020 1.03354 1.86066 1.24640 1.26316 1.87359 1.18727 0.89068 0.86309 0.92489 1.21678 1.02239 0.90701 1.08392 1.21426 0.92707 0.99002 0.90639 1.21367 0.95309 0.97298 1.07065 1.17700 0.76740 0.93270 0.99918 1.91535 1.30109 1.97008 1.93524 1.19117 0.93031 0.92831 1.18536 1.18054 0.78444 0.83379 0.83932 1.90757 1.57008 1.64733 1.33144 1.46060 1.53358 1.27528 1.08095 1.21081 0.92460 0.83842 0.98978 0.91571 1.22075 0.99936 0.97262 1.01822 1.21842 0.97557 0.99710 0.96090 1.21425 0.97526 0.99125 0.96364 1.21578 0.97172 0.97784 0.98275 1.20835 0.92531 0.96884 0.87543 1.42607 1.42839 1.33325 1.20315 1.19616 1.11165 1.05709 1.01955 0.91025 1.25632 1.02934 1.01125 0.97158 1.69810 1.45472 1.35505 1.11168 0.85161 0.78887 0.78597 0.76819 1.20416 1.21693 1.20235 0.90694 0.90110 0.86723 0.80705 0.79976 0.82088 0.75353 0.91014 0.90048 0.94083 0.88896 0.89645 0.92310 0.92739 0.92049 0.91749 0.96723 0.97020 0.79338 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.21 16 2 O -0.33 -5.73 9.95 -89.64 -0.89 -6.62 16 3 C 0.18 3.23 6.70 22.84 0.15 3.38 16 4 C -0.21 -2.07 9.03 22.34 0.20 -1.87 16 5 C -0.02 -0.17 10.02 22.29 0.22 0.06 16 6 C -0.19 -2.76 10.00 22.29 0.22 -2.53 16 7 C 0.14 3.26 7.29 22.66 0.17 3.42 16 8 F -0.14 -4.03 16.83 44.97 0.76 -3.27 16 9 C -0.23 -5.50 5.64 -19.97 -0.11 -5.61 16 10 C 0.58 16.60 6.39 86.65 0.55 17.16 16 11 O -0.58 -21.30 16.77 -4.04 -0.07 -21.37 16 12 N -0.70 -16.35 4.53 -445.86 -2.02 -18.36 16 13 C 0.14 3.15 2.57 44.99 0.12 3.26 16 14 H 0.07 1.82 7.58 -2.39 -0.02 1.80 16 15 C -0.15 -2.93 9.48 71.98 0.68 -2.24 16 16 C -0.11 -2.32 4.75 30.60 0.15 -2.18 16 17 C -0.11 -2.83 5.10 30.59 0.16 -2.67 16 18 C -0.11 -3.63 5.33 30.59 0.16 -3.46 16 19 C 0.15 6.41 6.26 86.38 0.54 6.95 16 20 N -0.75 -40.49 5.60 -343.45 -1.92 -42.41 16 21 C -0.25 -14.90 9.99 84.03 0.84 -14.06 16 22 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 24 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 25 Si 0.98 47.37 29.55 68.60 2.03 49.39 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 29 H 0.07 0.25 7.66 -2.39 -0.02 0.23 16 30 H 0.08 0.19 7.66 -2.39 -0.02 0.17 16 31 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.18 0.43 6.29 -2.91 -0.02 0.41 16 33 H 0.18 0.03 8.06 -2.91 -0.02 0.00 16 34 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.41 7.93 8.59 -92.71 -0.80 7.14 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 1.59 7.75 -2.39 -0.02 1.57 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.37 21.15 7.67 -92.70 -0.71 20.44 16 48 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -81.71 406.50 3.26 -78.45 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: -0.53 Total: 27.95 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.63 Total: -3.26 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -3.66 Total: -121.28 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.96 Total: -27.98 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.76 Total: -3.27 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -81.71 3.26 -78.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170943499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.512 kcal (2) G-P(sol) polarization free energy of solvation -81.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds