Wall clock time and date at job start Tue Mar 31 2020 22:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35762 * 117.00192 * 2 1 4 4 C 1.38933 * 119.91576 * 0.32139 * 3 2 1 5 5 C 1.37730 * 120.11511 * 180.28094 * 4 3 2 6 6 C 1.39723 * 119.95086 * 359.41544 * 5 4 3 7 7 C 1.47596 * 120.08353 * 180.25687 * 6 5 4 8 8 O 1.21586 * 120.00186 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00407 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00248 * 180.02562 * 9 7 6 11 11 H 1.09008 * 109.46805 * 34.99698 * 10 9 7 12 12 C 1.52999 * 109.47159 * 275.00030 * 10 9 7 13 13 C 1.52991 * 109.47245 * 154.99658 * 10 9 7 14 14 C 1.53005 * 109.47350 * 295.00364 * 13 10 9 15 15 C 1.53004 * 109.47161 * 179.97438 * 14 13 10 16 16 C 1.52994 * 109.46918 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47205 * 179.97438 * 16 15 14 18 18 C 1.36939 * 120.00298 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99628 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99867 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00254 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99849 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47014 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46763 * 119.99923 * 22 20 18 25 25 H 1.48496 * 109.47327 * 240.00085 * 22 20 18 26 26 C 1.39742 * 119.83678 * 0.28522 * 6 5 4 27 27 C 1.37894 * 119.88534 * 359.97438 * 26 6 5 28 28 F 1.35095 * 119.97786 * 180.02562 * 27 26 6 29 29 H 1.09005 * 109.47387 * 59.99967 * 1 2 3 30 30 H 1.09002 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47052 * 299.99803 * 1 2 3 32 32 H 1.08003 * 119.94249 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.02804 * 179.70097 * 5 4 3 34 34 H 0.96993 * 119.99393 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47220 * 179.97438 * 12 10 9 36 36 H 1.08999 * 109.47151 * 300.00126 * 12 10 9 37 37 H 1.08999 * 109.47426 * 59.99901 * 12 10 9 38 38 H 1.09002 * 109.47214 * 55.00095 * 13 10 9 39 39 H 1.09003 * 109.47719 * 175.00038 * 13 10 9 40 40 H 1.09002 * 109.46626 * 299.99476 * 14 13 10 41 41 H 1.08998 * 109.47030 * 59.99966 * 14 13 10 42 42 H 1.08999 * 109.46919 * 300.00293 * 15 14 13 43 43 H 1.08999 * 109.46847 * 59.99615 * 15 14 13 44 44 H 1.08999 * 109.47741 * 300.00006 * 16 15 14 45 45 H 1.08999 * 109.47498 * 60.00231 * 16 15 14 46 46 H 0.97001 * 119.99529 * 0.02562 * 17 16 15 47 47 H 0.96994 * 120.00053 * 179.97438 * 21 20 18 48 48 H 1.07999 * 120.05648 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2870 2.3737 0.0068 5 6 1.9080 3.6031 0.0009 6 6 3.3031 3.6798 0.0006 7 6 3.9717 4.9957 0.0001 8 8 3.3083 6.0147 0.0005 9 7 5.3176 5.0679 -0.0008 10 6 5.9811 6.3740 -0.0007 11 1 5.3954 7.0790 0.5894 12 6 6.0990 6.8862 -1.4376 13 6 7.3780 6.2364 0.6080 14 6 7.2557 5.8443 2.0819 15 6 8.6527 5.7061 2.6904 16 6 8.5305 5.3147 4.1644 17 7 9.8681 5.1817 4.7469 18 6 10.0099 4.8363 6.0644 19 1 9.1357 4.6616 6.6739 20 6 11.2773 4.7109 6.6165 21 7 12.3428 4.9243 5.8737 22 14 11.4708 4.2390 8.4135 23 1 10.1297 4.0554 9.0242 24 1 12.2371 2.9709 8.5125 25 1 12.1993 5.3151 9.1322 26 6 4.0640 2.5077 0.0001 27 6 3.4352 1.2805 0.0005 28 9 4.1689 0.1461 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2086 2.3146 0.0116 33 1 1.3171 4.5071 0.0013 34 1 5.8467 4.2551 -0.0007 35 1 6.5923 7.8582 -1.4375 36 1 6.6846 6.1813 -2.0277 37 1 5.1039 6.9843 -1.8712 38 1 7.9335 5.4667 0.0722 39 1 7.9048 7.1872 0.5274 40 1 6.7002 6.6141 2.6176 41 1 6.7290 4.8935 2.1624 42 1 9.2079 4.9363 2.1544 43 1 9.1798 6.6567 2.6097 44 1 7.9754 6.0848 4.7000 45 1 8.0032 4.3642 4.2454 46 1 10.6532 5.3390 4.1995 47 1 13.2284 4.8370 6.2596 48 1 5.1425 2.5629 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171351496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:53 Heat of formation + Delta-G solvation = -99.401937 kcal Electronic energy + Delta-G solvation = -28229.563891 eV Core-core repulsion = 24006.142415 eV Total energy + Delta-G solvation = -4223.421477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.16441 -40.85484 -39.93401 -37.77305 -36.84202 -35.27310 -33.35517 -32.10824 -31.15172 -30.70914 -29.96361 -28.00350 -27.44697 -24.57667 -23.93745 -23.24734 -22.16484 -21.14064 -20.77760 -20.63347 -19.07289 -18.14862 -17.40800 -16.98338 -16.68755 -16.61580 -16.28302 -15.53374 -15.28316 -15.19790 -14.97569 -14.90791 -14.70382 -14.39887 -13.97542 -13.57504 -13.46897 -13.13291 -13.03320 -12.94394 -12.89142 -12.72252 -12.48806 -12.35431 -11.78158 -11.74099 -11.66971 -11.45154 -11.26481 -10.99476 -10.81032 -10.70355 -10.40207 -10.30723 -10.20276 -9.95053 -9.65697 -9.55519 -9.30738 -8.84322 -8.73314 -6.88140 -5.73658 -3.01912 0.28568 0.60593 2.39939 2.52655 2.86008 3.30059 3.45321 3.50742 3.53228 3.66520 4.07784 4.22085 4.40654 4.54831 4.58090 4.59422 4.64047 4.67800 4.85434 4.88793 4.94691 4.98213 5.22786 5.25974 5.39551 5.41761 5.44535 5.55553 5.56505 5.61309 5.67210 5.73206 5.79285 5.90047 5.95434 5.97942 6.10189 6.20794 6.31652 6.36119 6.40110 6.48115 6.65620 6.91634 6.95474 7.23207 7.73501 7.93713 8.45832 9.56580 10.15904 10.50444 11.49537 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009893 B = 0.002152 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.656615 B =13006.858575 C =15034.778550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.121 3.879 4 C -0.192 4.192 5 C -0.026 4.026 6 C -0.145 4.145 7 C 0.565 3.435 8 O -0.537 6.537 9 N -0.717 5.717 10 C 0.141 3.859 11 H 0.091 0.909 12 C -0.163 4.163 13 C -0.128 4.128 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.081 4.081 27 C 0.065 3.935 28 F -0.127 7.127 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.961 -4.894 -19.867 32.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.074 3.926 4 C -0.211 4.211 5 C -0.046 4.046 6 C -0.149 4.149 7 C 0.352 3.648 8 O -0.415 6.415 9 N -0.369 5.369 10 C 0.037 3.963 11 H 0.109 0.891 12 C -0.222 4.222 13 C -0.166 4.166 14 C -0.153 4.153 15 C -0.163 4.163 16 C 0.024 3.976 17 N -0.379 5.379 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.213 4.213 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.101 4.101 27 C 0.045 3.955 28 F -0.105 7.105 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.235 0.765 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.216 0.784 47 H 0.064 0.936 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.355 -4.437 -19.688 32.406 hybrid contribution 0.653 -0.798 0.866 1.347 sum -24.702 -5.235 -18.822 31.493 Atomic orbital electron populations 1.23213 0.77339 1.04726 1.01856 1.86127 1.22237 1.25647 1.87760 1.19296 0.90892 0.85841 0.96602 1.21144 1.00730 0.90994 1.08204 1.21128 0.93112 0.97965 0.92345 1.19704 0.94170 0.92535 1.08449 1.17960 0.82286 0.88298 0.76231 1.90787 1.64655 1.36018 1.50020 1.46046 1.06093 1.09938 1.74783 1.21095 0.93854 0.84460 0.96896 0.89083 1.22179 1.02311 1.01442 0.96219 1.21955 0.94853 1.03151 0.96610 1.21532 0.97962 1.01612 0.94191 1.21726 0.95862 1.01668 0.97093 1.20650 0.89041 0.97115 0.90749 1.42399 1.01818 1.83900 1.09786 1.19301 0.92198 1.38352 0.86986 0.91180 1.24757 0.95452 1.02869 0.98199 1.69672 0.97125 1.56464 1.35109 0.86106 0.77459 0.77704 0.84895 1.20563 1.21864 1.21867 1.21179 1.01012 0.89781 0.98125 1.16733 0.85988 0.82989 1.09780 1.91548 1.76389 1.48311 1.94261 0.92079 0.87605 0.92004 0.83668 0.83500 0.76450 0.91382 0.92426 0.92218 0.91287 0.90031 0.91903 0.92157 0.92109 0.92029 0.96569 0.96617 0.78353 0.93607 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.58 10.35 -19.00 -0.20 -2.77 16 3 C 0.12 1.06 6.70 -38.98 -0.26 0.80 16 4 C -0.19 -1.33 9.01 -39.51 -0.36 -1.68 16 5 C -0.03 -0.22 9.58 -39.21 -0.38 -0.59 16 6 C -0.15 -1.34 5.87 -104.96 -0.62 -1.95 16 7 C 0.57 6.11 7.73 -12.44 -0.10 6.01 16 8 O -0.54 -7.44 16.00 5.29 0.08 -7.36 16 9 N -0.72 -6.51 4.48 -54.83 -0.25 -6.75 16 10 C 0.14 1.33 2.57 -67.94 -0.17 1.15 16 11 H 0.09 1.01 7.58 -51.92 -0.39 0.62 16 12 C -0.16 -1.38 9.48 37.16 0.35 -1.02 16 13 C -0.13 -1.21 4.75 -26.73 -0.13 -1.34 16 14 C -0.11 -1.40 5.10 -26.73 -0.14 -1.53 16 15 C -0.13 -1.99 5.33 -26.73 -0.14 -2.13 16 16 C 0.15 3.15 6.26 -4.04 -0.03 3.13 16 17 N -0.74 -19.33 5.60 -59.91 -0.34 -19.66 16 18 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 21 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 22 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 C -0.08 -0.69 9.51 -39.15 -0.37 -1.06 16 27 C 0.07 0.63 7.30 -39.36 -0.29 0.35 16 28 F -0.13 -1.43 17.10 2.25 0.04 -1.39 16 29 H 0.06 0.16 7.67 -51.93 -0.40 -0.24 16 30 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.18 7.64 -51.93 -0.40 -0.22 16 32 H 0.15 0.59 6.28 -52.48 -0.33 0.26 16 33 H 0.15 1.11 7.64 -52.49 -0.40 0.71 16 34 H 0.40 2.88 6.62 -40.82 -0.27 2.61 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.72 7.75 -51.93 -0.40 0.31 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 47 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.15 0.96 6.40 -52.49 -0.34 0.62 16 LS Contribution 402.91 15.07 6.07 6.07 Total: -1.00 -35.21 402.91 -8.19 -43.40 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.44 Total: 5.18 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.87 Total: -6.42 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.14 Total: -54.56 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.11 Total: -10.13 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.21 -8.19 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171351496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.004 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds