Wall clock time and date at job start Tue Mar 31 2020 22:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35762 * 117.00192 * 2 1 4 4 C 1.38933 * 119.91576 * 0.32139 * 3 2 1 5 5 C 1.37730 * 120.11511 * 180.28094 * 4 3 2 6 6 C 1.39723 * 119.95086 * 359.41544 * 5 4 3 7 7 C 1.47596 * 120.08353 * 180.25687 * 6 5 4 8 8 O 1.21586 * 120.00186 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00407 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00248 * 180.02562 * 9 7 6 11 11 H 1.09008 * 109.46805 * 34.99698 * 10 9 7 12 12 C 1.52999 * 109.47159 * 275.00030 * 10 9 7 13 13 C 1.52991 * 109.47245 * 154.99658 * 10 9 7 14 14 C 1.53005 * 109.47350 * 295.00364 * 13 10 9 15 15 C 1.53004 * 109.47161 * 179.97438 * 14 13 10 16 16 C 1.52994 * 109.46918 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47205 * 179.97438 * 16 15 14 18 18 C 1.36939 * 120.00298 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99628 * 0.02562 * 18 17 16 20 20 C 1.38812 * 119.99867 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00254 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99849 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47014 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46763 * 119.99923 * 22 20 18 25 25 H 1.48496 * 109.47327 * 240.00085 * 22 20 18 26 26 C 1.39742 * 119.83678 * 0.28522 * 6 5 4 27 27 C 1.37894 * 119.88534 * 359.97438 * 26 6 5 28 28 F 1.35095 * 119.97786 * 180.02562 * 27 26 6 29 29 H 1.09005 * 109.47387 * 59.99967 * 1 2 3 30 30 H 1.09002 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47052 * 299.99803 * 1 2 3 32 32 H 1.08003 * 119.94249 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.02804 * 179.70097 * 5 4 3 34 34 H 0.96993 * 119.99393 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47220 * 179.97438 * 12 10 9 36 36 H 1.08999 * 109.47151 * 300.00126 * 12 10 9 37 37 H 1.08999 * 109.47426 * 59.99901 * 12 10 9 38 38 H 1.09002 * 109.47214 * 55.00095 * 13 10 9 39 39 H 1.09003 * 109.47719 * 175.00038 * 13 10 9 40 40 H 1.09002 * 109.46626 * 299.99476 * 14 13 10 41 41 H 1.08998 * 109.47030 * 59.99966 * 14 13 10 42 42 H 1.08999 * 109.46919 * 300.00293 * 15 14 13 43 43 H 1.08999 * 109.46847 * 59.99615 * 15 14 13 44 44 H 1.08999 * 109.47741 * 300.00006 * 16 15 14 45 45 H 1.08999 * 109.47498 * 60.00231 * 16 15 14 46 46 H 0.97001 * 119.99529 * 0.02562 * 17 16 15 47 47 H 0.96994 * 120.00053 * 179.97438 * 21 20 18 48 48 H 1.07999 * 120.05648 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2870 2.3737 0.0068 5 6 1.9080 3.6031 0.0009 6 6 3.3031 3.6798 0.0006 7 6 3.9717 4.9957 0.0001 8 8 3.3083 6.0147 0.0005 9 7 5.3176 5.0679 -0.0008 10 6 5.9811 6.3740 -0.0007 11 1 5.3954 7.0790 0.5894 12 6 6.0990 6.8862 -1.4376 13 6 7.3780 6.2364 0.6080 14 6 7.2557 5.8443 2.0819 15 6 8.6527 5.7061 2.6904 16 6 8.5305 5.3147 4.1644 17 7 9.8681 5.1817 4.7469 18 6 10.0099 4.8363 6.0644 19 1 9.1357 4.6616 6.6739 20 6 11.2773 4.7109 6.6165 21 7 12.3428 4.9243 5.8737 22 14 11.4708 4.2390 8.4135 23 1 10.1297 4.0554 9.0242 24 1 12.2371 2.9709 8.5125 25 1 12.1993 5.3151 9.1322 26 6 4.0640 2.5077 0.0001 27 6 3.4352 1.2805 0.0005 28 9 4.1689 0.1461 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2086 2.3146 0.0116 33 1 1.3171 4.5071 0.0013 34 1 5.8467 4.2551 -0.0007 35 1 6.5923 7.8582 -1.4375 36 1 6.6846 6.1813 -2.0277 37 1 5.1039 6.9843 -1.8712 38 1 7.9335 5.4667 0.0722 39 1 7.9048 7.1872 0.5274 40 1 6.7002 6.6141 2.6176 41 1 6.7290 4.8935 2.1624 42 1 9.2079 4.9363 2.1544 43 1 9.1798 6.6567 2.6097 44 1 7.9754 6.0848 4.7000 45 1 8.0032 4.3642 4.2454 46 1 10.6532 5.3390 4.1995 47 1 13.2284 4.8370 6.2596 48 1 5.1425 2.5629 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171351496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:52 Heat of formation + Delta-G solvation = -121.875699 kcal Electronic energy + Delta-G solvation = -28230.538427 eV Core-core repulsion = 24006.142415 eV Total energy + Delta-G solvation = -4224.396012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.92941 -41.54002 -40.62462 -38.46946 -37.82648 -36.82126 -34.81910 -33.26437 -32.17775 -31.75077 -30.81591 -28.81303 -28.40704 -25.98628 -24.97930 -23.89733 -23.56495 -22.10850 -21.94142 -21.51303 -19.70880 -19.13348 -18.79363 -18.09426 -17.35334 -17.28190 -17.06786 -16.69216 -16.26841 -16.14054 -15.95744 -15.85355 -15.54370 -15.41622 -15.27082 -15.08090 -14.62492 -14.20484 -14.06935 -14.03277 -13.56604 -13.38029 -13.20950 -13.02943 -12.96190 -12.90086 -12.85226 -12.45650 -12.29862 -12.23978 -12.14078 -12.11503 -11.88862 -11.80236 -11.49223 -11.39048 -11.06428 -10.95556 -10.20087 -10.10491 -9.38359 -9.02066 -7.97469 -5.26660 -0.38036 -0.02649 1.46027 1.47208 1.57516 1.66449 2.04307 2.12506 2.54530 2.59773 3.02569 3.35853 3.48988 3.56381 3.66077 3.87331 3.96975 4.04886 4.06596 4.15195 4.29426 4.33296 4.37345 4.37630 4.42954 4.58479 4.62300 4.65958 4.71850 4.79042 4.81655 4.88383 4.94034 4.95665 4.99701 5.02310 5.09331 5.16275 5.28126 5.34455 5.37880 5.44487 5.45800 5.53559 5.58243 6.12767 6.25791 6.49214 7.15878 7.31292 8.08030 8.31459 9.26338 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009893 B = 0.002152 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.656615 B =13006.858575 C =15034.778550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.327 6.327 3 C 0.119 3.881 4 C -0.182 4.182 5 C -0.027 4.027 6 C -0.159 4.159 7 C 0.564 3.436 8 O -0.573 6.573 9 N -0.709 5.709 10 C 0.144 3.856 11 H 0.073 0.927 12 C -0.157 4.157 13 C -0.118 4.118 14 C -0.106 4.106 15 C -0.112 4.112 16 C 0.147 3.853 17 N -0.749 5.749 18 C -0.248 4.248 19 H 0.073 0.927 20 C -0.078 4.078 21 N -0.969 5.969 22 Si 0.976 3.024 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.074 4.074 27 C 0.038 3.962 28 F -0.141 7.141 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.177 0.823 33 H 0.152 0.848 34 H 0.410 0.590 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.013 0.987 45 H 0.017 0.983 46 H 0.374 0.626 47 H 0.252 0.748 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.259 -5.315 -20.203 33.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.240 6.240 3 C 0.072 3.928 4 C -0.200 4.200 5 C -0.046 4.046 6 C -0.162 4.162 7 C 0.353 3.647 8 O -0.454 6.454 9 N -0.361 5.361 10 C 0.040 3.960 11 H 0.091 0.909 12 C -0.216 4.216 13 C -0.155 4.155 14 C -0.144 4.144 15 C -0.150 4.150 16 C 0.021 3.979 17 N -0.392 5.392 18 C -0.380 4.380 19 H 0.091 0.909 20 C -0.270 4.270 21 N -0.620 5.620 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.094 4.094 27 C 0.018 3.982 28 F -0.120 7.120 29 H 0.095 0.905 30 H 0.139 0.861 31 H 0.092 0.908 32 H 0.194 0.806 33 H 0.169 0.831 34 H 0.247 0.753 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.206 0.794 47 H 0.061 0.939 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -26.682 -4.875 -20.035 33.721 hybrid contribution 0.952 -0.698 0.951 1.516 sum -25.730 -5.573 -19.084 32.516 Atomic orbital electron populations 1.23553 0.75094 1.06301 1.03239 1.86110 1.24652 1.25691 1.87546 1.19471 0.90772 0.86618 0.95984 1.21388 1.02100 0.89714 1.06792 1.21302 0.92873 0.98696 0.91777 1.19651 0.94739 0.91875 1.09962 1.18185 0.82583 0.88394 0.75561 1.90765 1.65432 1.37232 1.51972 1.46019 1.05795 1.10389 1.73920 1.21026 0.93361 0.84264 0.97381 0.90874 1.22121 1.01810 1.02326 0.95310 1.21862 0.95062 1.04036 0.94585 1.21440 0.95410 1.01813 0.95767 1.21601 0.98146 1.01352 0.93935 1.20864 0.86453 0.96966 0.93608 1.42641 1.03551 1.83803 1.09184 1.19687 0.92422 1.37609 0.88310 0.90907 1.25624 0.95222 1.03542 1.02632 1.69820 0.97394 1.57854 1.36926 0.85039 0.77769 0.77040 0.79708 1.19163 1.21754 1.21786 1.21257 1.01778 0.89127 0.97189 1.17027 0.86718 0.82904 1.11556 1.91503 1.76816 1.49060 1.94587 0.90461 0.86132 0.90757 0.80621 0.83059 0.75253 0.90350 0.91232 0.93614 0.89813 0.89255 0.92422 0.91743 0.91899 0.92302 0.96863 0.96552 0.79393 0.93890 0.81959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.33 -5.16 10.35 -90.88 -0.94 -6.10 16 3 C 0.12 1.96 6.70 22.66 0.15 2.12 16 4 C -0.18 -2.20 9.01 22.32 0.20 -1.99 16 5 C -0.03 -0.42 9.58 22.51 0.22 -0.20 16 6 C -0.16 -2.82 5.87 -20.09 -0.12 -2.94 16 7 C 0.56 11.92 7.73 86.71 0.67 12.59 16 8 O -0.57 -15.91 16.00 -3.99 -0.06 -15.97 16 9 N -0.71 -12.07 4.48 -445.64 -2.00 -14.07 16 10 C 0.14 2.52 2.57 44.99 0.12 2.64 16 11 H 0.07 1.59 7.58 -2.38 -0.02 1.57 16 12 C -0.16 -2.41 9.48 71.98 0.68 -1.73 16 13 C -0.12 -1.99 4.75 30.59 0.15 -1.84 16 14 C -0.11 -2.42 5.10 30.60 0.16 -2.27 16 15 C -0.11 -3.44 5.33 30.59 0.16 -3.28 16 16 C 0.15 6.05 6.26 86.38 0.54 6.59 16 17 N -0.75 -39.55 5.60 -343.47 -1.92 -41.47 16 18 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 19 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 21 N -0.97 -60.33 13.06 21.65 0.28 -60.04 16 22 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 C -0.07 -1.21 9.51 22.55 0.21 -1.00 16 27 C 0.04 0.72 7.30 22.41 0.16 0.89 16 28 F -0.14 -3.20 17.10 44.97 0.77 -2.43 16 29 H 0.08 0.20 7.67 -2.38 -0.02 0.18 16 30 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.25 7.64 -2.39 -0.02 0.23 16 32 H 0.18 0.92 6.28 -2.91 -0.02 0.91 16 33 H 0.15 2.15 7.64 -2.91 -0.02 2.13 16 34 H 0.41 5.23 6.62 -92.71 -0.61 4.62 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.43 7.75 -2.39 -0.02 1.41 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.37 20.72 7.67 -92.71 -0.71 20.01 16 47 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 48 H 0.16 1.95 6.40 -2.91 -0.02 1.93 16 Total: -1.00 -76.02 402.91 3.53 -72.49 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.34 Total: 25.50 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 5.72 Total: -6.92 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -3.64 Total: -115.59 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -1.00 Total: -22.07 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.77 Total: -2.43 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -76.02 3.53 -72.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171351496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.386 kcal (2) G-P(sol) polarization free energy of solvation -76.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds