Wall clock time and date at job start Tue Mar 31 2020 22:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35767 * 116.99991 * 2 1 4 4 C 1.38928 * 119.91485 * 359.72210 * 3 2 1 5 5 C 1.37739 * 120.11393 * 180.27194 * 4 3 2 6 6 C 1.39724 * 119.95180 * 0.02562 * 5 4 3 7 7 C 1.47601 * 120.07964 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99938 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00338 * 0.02655 * 7 6 5 10 10 C 1.46496 * 120.00023 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47505 * 324.99774 * 10 9 7 12 12 C 1.53002 * 109.47256 * 85.00115 * 10 9 7 13 13 C 1.53003 * 109.46975 * 205.00056 * 10 9 7 14 14 C 1.52996 * 109.47285 * 65.00154 * 13 10 9 15 15 C 1.52996 * 109.47459 * 180.02562 * 14 13 10 16 16 C 1.52996 * 109.47459 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47225 * 179.97438 * 16 15 14 18 18 C 1.36940 * 120.00063 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00050 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99872 * 180.02562 * 18 17 16 21 21 N 1.31608 * 120.00065 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99452 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47210 * 89.99897 * 22 20 18 24 24 H 1.48507 * 109.46919 * 209.99567 * 22 20 18 25 25 H 1.48493 * 109.47607 * 329.99449 * 22 20 18 26 26 C 1.39739 * 119.83527 * 0.02562 * 6 5 4 27 27 C 1.37890 * 119.88629 * 359.97438 * 26 6 5 28 28 F 1.35099 * 119.98034 * 179.97438 * 27 26 6 29 29 H 1.08998 * 109.46861 * 300.00316 * 1 2 3 30 30 H 1.09004 * 109.46961 * 59.99711 * 1 2 3 31 31 H 1.08993 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.94581 * 0.25585 * 4 3 2 33 33 H 1.08001 * 120.02508 * 180.02562 * 5 4 3 34 34 H 0.97004 * 119.99822 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46858 * 59.99470 * 12 10 9 36 36 H 1.08999 * 109.47374 * 179.97438 * 12 10 9 37 37 H 1.08996 * 109.46949 * 299.99949 * 12 10 9 38 38 H 1.09001 * 109.47112 * 185.00413 * 13 10 9 39 39 H 1.08997 * 109.47013 * 304.99897 * 13 10 9 40 40 H 1.09001 * 109.47256 * 300.00170 * 14 13 10 41 41 H 1.08997 * 109.47305 * 59.99921 * 14 13 10 42 42 H 1.09001 * 109.46854 * 300.00207 * 15 14 13 43 43 H 1.08997 * 109.47098 * 59.99584 * 15 14 13 44 44 H 1.09001 * 109.47256 * 299.99960 * 16 15 14 45 45 H 1.09005 * 109.47053 * 59.99667 * 16 15 14 46 46 H 0.96996 * 120.00252 * 359.97438 * 17 16 15 47 47 H 0.96999 * 120.00147 * 180.02562 * 21 20 18 48 48 H 1.08002 * 120.05382 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0115 6 6 3.3032 3.6799 -0.0119 7 6 3.9717 4.9958 -0.0186 8 8 5.1858 5.0610 -0.0194 9 7 3.2363 6.1253 -0.0237 10 6 3.8998 7.4314 -0.0298 11 1 4.8149 7.3768 0.5599 12 6 4.2428 7.8225 -1.4686 13 6 2.9653 8.4810 0.5752 14 6 2.7219 8.1574 2.0506 15 6 1.7869 9.2066 2.6554 16 6 1.5431 8.8828 4.1306 17 7 0.6483 9.8877 4.7098 18 6 0.2861 9.8038 6.0278 19 1 0.6598 8.9965 6.6402 20 6 -0.5622 10.7558 6.5764 21 7 -1.0180 11.7393 5.8301 22 14 -1.0568 10.6409 8.3741 23 1 -0.0816 11.3919 9.2048 24 1 -2.4112 11.2229 8.5530 25 1 -1.0708 9.2165 8.7936 26 6 4.0640 2.5078 -0.0071 27 6 3.4352 1.2806 -0.0015 28 9 4.1689 0.1462 0.0026 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2087 2.3146 -0.0062 33 1 1.3171 4.5071 -0.0156 34 1 2.2676 6.0734 -0.0234 35 1 3.3276 7.8771 -2.0582 36 1 4.7361 8.7945 -1.4732 37 1 4.9086 7.0748 -1.8995 38 1 3.4225 9.4668 0.4899 39 1 2.0157 8.4734 0.0401 40 1 2.2648 7.1716 2.1358 41 1 3.6715 8.1650 2.5856 42 1 2.2437 10.1926 2.5701 43 1 0.8374 9.1987 2.1202 44 1 1.0861 7.8968 4.2155 45 1 2.4925 8.8904 4.6661 46 1 0.3129 10.6130 4.1600 47 1 -1.6105 12.4048 6.2135 48 1 5.1426 2.5630 -0.0070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171351498.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:57 Heat of formation + Delta-G solvation = -99.648601 kcal Electronic energy + Delta-G solvation = -28163.362383 eV Core-core repulsion = 23939.930210 eV Total energy + Delta-G solvation = -4223.432173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.16821 -40.85937 -39.92919 -37.77510 -36.85777 -35.29546 -33.35911 -32.03417 -31.26179 -30.71669 -30.01366 -27.94499 -27.46820 -24.55858 -23.96866 -23.23629 -22.19791 -21.16789 -20.79299 -20.65479 -19.05997 -18.15790 -17.46964 -17.01770 -16.68081 -16.52459 -16.29156 -15.53024 -15.28340 -15.20612 -15.06188 -14.77741 -14.72519 -14.40611 -13.97997 -13.58743 -13.48657 -13.20543 -13.05115 -13.02492 -12.96323 -12.72663 -12.42359 -12.34806 -11.80184 -11.70188 -11.66774 -11.47039 -11.28831 -11.01180 -10.82148 -10.72601 -10.43755 -10.33059 -10.20670 -9.99818 -9.67619 -9.52649 -9.32227 -8.86355 -8.74626 -6.90955 -5.76125 -3.04457 0.29238 0.60403 2.39918 2.53428 2.82931 3.29912 3.43621 3.48570 3.50293 3.69564 4.09530 4.27676 4.36466 4.50331 4.53761 4.61972 4.64197 4.65299 4.86443 4.94623 4.95742 5.01170 5.22899 5.27440 5.37406 5.40414 5.42829 5.51608 5.54249 5.59883 5.64315 5.68484 5.76690 5.88061 5.93756 6.01722 6.08140 6.19002 6.29005 6.34422 6.37427 6.45452 6.65747 6.88777 6.92613 7.22539 7.70497 7.93884 8.43386 9.54111 10.13334 10.47859 11.47019 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009891 B = 0.002095 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.292267 B =13363.774686 C =15363.985244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.122 3.878 4 C -0.189 4.189 5 C -0.051 4.051 6 C -0.145 4.145 7 C 0.564 3.436 8 O -0.536 6.536 9 N -0.716 5.716 10 C 0.141 3.859 11 H 0.091 0.909 12 C -0.163 4.163 13 C -0.127 4.127 14 C -0.115 4.115 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.056 4.056 27 C 0.062 3.938 28 F -0.128 7.128 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.400 0.600 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.316 -20.362 -19.782 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.074 3.926 4 C -0.208 4.208 5 C -0.070 4.070 6 C -0.149 4.149 7 C 0.351 3.649 8 O -0.414 6.414 9 N -0.368 5.368 10 C 0.037 3.963 11 H 0.109 0.891 12 C -0.222 4.222 13 C -0.165 4.165 14 C -0.153 4.153 15 C -0.163 4.163 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.076 4.076 27 C 0.042 3.958 28 F -0.107 7.107 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.235 0.765 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.216 0.784 47 H 0.065 0.935 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.270 -20.593 -19.607 29.117 hybrid contribution -1.145 0.133 0.879 1.449 sum 5.126 -20.459 -18.728 28.207 Atomic orbital electron populations 1.23224 0.77242 1.04759 1.01964 1.86124 1.22306 1.25645 1.87763 1.19290 0.90859 0.85849 0.96575 1.21107 1.00796 0.91042 1.07872 1.21191 0.93226 0.97905 0.94674 1.19665 0.93349 0.93375 1.08463 1.17966 0.86881 0.83748 0.76277 1.90795 1.13396 1.87390 1.49801 1.46007 1.10220 1.05654 1.74942 1.21094 0.96946 0.81379 0.96897 0.89083 1.22180 1.01822 1.01966 0.96194 1.21949 0.99457 0.98518 0.96589 1.21529 1.00221 0.99341 0.94204 1.21724 0.98955 0.98563 0.97091 1.20649 0.93395 0.92721 0.90774 1.42390 1.55878 1.29952 1.09685 1.19255 1.22615 1.08154 0.86943 0.91241 1.24749 1.00544 0.97729 0.98165 1.69656 1.37875 1.15730 1.35126 0.86181 0.77638 0.77369 0.84975 1.21701 1.21758 1.20768 1.21086 1.01930 0.88845 0.95696 1.16761 0.85904 0.83005 1.10173 1.91531 1.76480 1.48317 1.94333 0.91881 0.92050 0.87607 0.83587 0.84366 0.76482 0.92457 0.91384 0.92192 0.90041 0.91322 0.92167 0.91888 0.92021 0.92148 0.96650 0.96566 0.78355 0.93541 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.58 10.35 -19.01 -0.20 -2.78 16 3 C 0.12 1.06 6.70 -38.98 -0.26 0.80 16 4 C -0.19 -1.25 9.01 -39.51 -0.36 -1.61 16 5 C -0.05 -0.35 9.53 -39.21 -0.37 -0.72 16 6 C -0.15 -1.34 5.87 -104.96 -0.62 -1.95 16 7 C 0.56 6.10 7.73 -12.44 -0.10 6.00 16 8 O -0.54 -7.64 16.00 5.29 0.08 -7.56 16 9 N -0.72 -6.19 4.48 -54.83 -0.25 -6.44 16 10 C 0.14 1.29 2.57 -67.93 -0.17 1.12 16 11 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 12 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 13 C -0.13 -1.16 4.75 -26.73 -0.13 -1.28 16 14 C -0.11 -1.35 5.10 -26.73 -0.14 -1.48 16 15 C -0.13 -1.93 5.33 -26.73 -0.14 -2.07 16 16 C 0.15 3.09 6.26 -4.04 -0.03 3.06 16 17 N -0.74 -19.02 5.60 -59.91 -0.34 -19.36 16 18 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 22 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 C -0.06 -0.55 9.56 -39.15 -0.37 -0.92 16 27 C 0.06 0.62 7.30 -39.36 -0.29 0.33 16 28 F -0.13 -1.44 17.10 2.25 0.04 -1.41 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.06 0.17 7.64 -51.93 -0.40 -0.23 16 31 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.15 0.58 6.27 -52.49 -0.33 0.25 16 33 H 0.14 0.59 6.39 -52.49 -0.34 0.26 16 34 H 0.40 2.53 6.62 -40.82 -0.27 2.26 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.38 10.32 7.67 -40.82 -0.31 10.01 16 47 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.16 1.53 7.64 -52.49 -0.40 1.12 16 LS Contribution 402.91 15.07 6.07 6.07 Total: -1.00 -34.95 402.91 -8.19 -43.15 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.44 Total: 4.74 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.87 Total: -6.17 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.14 Total: -53.60 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -0.11 Total: -10.34 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.95 -8.19 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171351498.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.501 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds