Wall clock time and date at job start Tue Mar 31 2020 22:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35767 * 116.99991 * 2 1 4 4 C 1.38928 * 119.91485 * 359.72210 * 3 2 1 5 5 C 1.37739 * 120.11393 * 180.27194 * 4 3 2 6 6 C 1.39724 * 119.95180 * 0.02562 * 5 4 3 7 7 C 1.47601 * 120.07964 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99938 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00338 * 0.02655 * 7 6 5 10 10 C 1.46496 * 120.00023 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47505 * 324.99774 * 10 9 7 12 12 C 1.53002 * 109.47256 * 85.00115 * 10 9 7 13 13 C 1.53003 * 109.46975 * 205.00056 * 10 9 7 14 14 C 1.52996 * 109.47285 * 65.00154 * 13 10 9 15 15 C 1.52996 * 109.47459 * 180.02562 * 14 13 10 16 16 C 1.52996 * 109.47459 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47225 * 179.97438 * 16 15 14 18 18 C 1.36940 * 120.00063 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00050 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99872 * 180.02562 * 18 17 16 21 21 N 1.31608 * 120.00065 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99452 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47210 * 89.99897 * 22 20 18 24 24 H 1.48507 * 109.46919 * 209.99567 * 22 20 18 25 25 H 1.48493 * 109.47607 * 329.99449 * 22 20 18 26 26 C 1.39739 * 119.83527 * 0.02562 * 6 5 4 27 27 C 1.37890 * 119.88629 * 359.97438 * 26 6 5 28 28 F 1.35099 * 119.98034 * 179.97438 * 27 26 6 29 29 H 1.08998 * 109.46861 * 300.00316 * 1 2 3 30 30 H 1.09004 * 109.46961 * 59.99711 * 1 2 3 31 31 H 1.08993 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.07998 * 119.94581 * 0.25585 * 4 3 2 33 33 H 1.08001 * 120.02508 * 180.02562 * 5 4 3 34 34 H 0.97004 * 119.99822 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.46858 * 59.99470 * 12 10 9 36 36 H 1.08999 * 109.47374 * 179.97438 * 12 10 9 37 37 H 1.08996 * 109.46949 * 299.99949 * 12 10 9 38 38 H 1.09001 * 109.47112 * 185.00413 * 13 10 9 39 39 H 1.08997 * 109.47013 * 304.99897 * 13 10 9 40 40 H 1.09001 * 109.47256 * 300.00170 * 14 13 10 41 41 H 1.08997 * 109.47305 * 59.99921 * 14 13 10 42 42 H 1.09001 * 109.46854 * 300.00207 * 15 14 13 43 43 H 1.08997 * 109.47098 * 59.99584 * 15 14 13 44 44 H 1.09001 * 109.47256 * 299.99960 * 16 15 14 45 45 H 1.09005 * 109.47053 * 59.99667 * 16 15 14 46 46 H 0.96996 * 120.00252 * 359.97438 * 17 16 15 47 47 H 0.96999 * 120.00147 * 180.02562 * 21 20 18 48 48 H 1.08002 * 120.05382 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0115 6 6 3.3032 3.6799 -0.0119 7 6 3.9717 4.9958 -0.0186 8 8 5.1858 5.0610 -0.0194 9 7 3.2363 6.1253 -0.0237 10 6 3.8998 7.4314 -0.0298 11 1 4.8149 7.3768 0.5599 12 6 4.2428 7.8225 -1.4686 13 6 2.9653 8.4810 0.5752 14 6 2.7219 8.1574 2.0506 15 6 1.7869 9.2066 2.6554 16 6 1.5431 8.8828 4.1306 17 7 0.6483 9.8877 4.7098 18 6 0.2861 9.8038 6.0278 19 1 0.6598 8.9965 6.6402 20 6 -0.5622 10.7558 6.5764 21 7 -1.0180 11.7393 5.8301 22 14 -1.0568 10.6409 8.3741 23 1 -0.0816 11.3919 9.2048 24 1 -2.4112 11.2229 8.5530 25 1 -1.0708 9.2165 8.7936 26 6 4.0640 2.5078 -0.0071 27 6 3.4352 1.2806 -0.0015 28 9 4.1689 0.1462 0.0026 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2087 2.3146 -0.0062 33 1 1.3171 4.5071 -0.0156 34 1 2.2676 6.0734 -0.0234 35 1 3.3276 7.8771 -2.0582 36 1 4.7361 8.7945 -1.4732 37 1 4.9086 7.0748 -1.8995 38 1 3.4225 9.4668 0.4899 39 1 2.0157 8.4734 0.0401 40 1 2.2648 7.1716 2.1358 41 1 3.6715 8.1650 2.5856 42 1 2.2437 10.1926 2.5701 43 1 0.8374 9.1987 2.1202 44 1 1.0861 7.8968 4.2155 45 1 2.4925 8.8904 4.6661 46 1 0.3129 10.6130 4.1600 47 1 -1.6105 12.4048 6.2135 48 1 5.1426 2.5630 -0.0070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171351498.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:56 Heat of formation + Delta-G solvation = -122.152238 kcal Electronic energy + Delta-G solvation = -28164.338214 eV Core-core repulsion = 23939.930210 eV Total energy + Delta-G solvation = -4224.408004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.95264 -41.54283 -40.61881 -38.46342 -37.82237 -36.81263 -34.80367 -33.21304 -32.09996 -31.88278 -30.82901 -28.79791 -28.35981 -25.96089 -24.95966 -23.92011 -23.54142 -22.10001 -21.92821 -21.52298 -19.69520 -19.11642 -18.81857 -18.12982 -17.30162 -17.26274 -17.06780 -16.67629 -16.25918 -16.15378 -15.97429 -15.87943 -15.45036 -15.32608 -15.26097 -15.17634 -14.56756 -14.19055 -14.07170 -14.05384 -13.70493 -13.37932 -13.20350 -13.01476 -12.89994 -12.87668 -12.82762 -12.43704 -12.26980 -12.21889 -12.14520 -12.13244 -11.86937 -11.78302 -11.47025 -11.37413 -11.06813 -10.93210 -10.17874 -10.11459 -9.38721 -9.00576 -7.96225 -5.25158 -0.37663 -0.02619 1.47089 1.49034 1.57518 1.66779 2.01405 2.12397 2.55704 2.59876 3.07103 3.37212 3.53495 3.59424 3.67816 3.81157 3.96288 4.06132 4.09082 4.16415 4.30828 4.36128 4.38775 4.39664 4.44457 4.61857 4.67491 4.68347 4.73010 4.80140 4.83794 4.90527 4.94769 4.97442 5.01508 5.03792 5.06254 5.15412 5.30230 5.35592 5.38926 5.46457 5.47163 5.56018 5.59801 6.13353 6.27032 6.52363 7.18565 7.32748 8.09861 8.33050 9.27400 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009891 B = 0.002095 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.292267 B =13363.774686 C =15363.985244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.328 6.328 3 C 0.121 3.879 4 C -0.181 4.181 5 C -0.037 4.037 6 C -0.159 4.159 7 C 0.563 3.437 8 O -0.580 6.580 9 N -0.704 5.704 10 C 0.143 3.857 11 H 0.069 0.931 12 C -0.158 4.158 13 C -0.116 4.116 14 C -0.107 4.107 15 C -0.112 4.112 16 C 0.147 3.853 17 N -0.749 5.749 18 C -0.249 4.249 19 H 0.073 0.927 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.974 3.026 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.269 1.269 26 C -0.065 4.065 27 C 0.035 3.965 28 F -0.143 7.143 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.180 0.820 33 H 0.171 0.829 34 H 0.414 0.586 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.019 0.981 45 H 0.010 0.990 46 H 0.374 0.626 47 H 0.252 0.748 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 -20.615 -20.206 29.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.241 6.241 3 C 0.073 3.927 4 C -0.199 4.199 5 C -0.056 4.056 6 C -0.162 4.162 7 C 0.351 3.649 8 O -0.461 6.461 9 N -0.356 5.356 10 C 0.039 3.961 11 H 0.087 0.913 12 C -0.216 4.216 13 C -0.154 4.154 14 C -0.145 4.145 15 C -0.150 4.150 16 C 0.021 3.979 17 N -0.392 5.392 18 C -0.381 4.381 19 H 0.091 0.909 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.803 3.197 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.194 1.194 26 C -0.085 4.085 27 C 0.015 3.985 28 F -0.122 7.122 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.138 0.862 32 H 0.198 0.802 33 H 0.188 0.812 34 H 0.252 0.748 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.028 0.972 46 H 0.206 0.794 47 H 0.061 0.939 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.265 -20.874 -20.042 29.250 hybrid contribution -0.547 0.151 0.996 1.146 sum 3.718 -20.723 -19.046 28.391 Atomic orbital electron populations 1.23562 0.74985 1.06299 1.03353 1.86107 1.24698 1.25749 1.87538 1.19450 0.90423 0.86891 0.95934 1.21466 1.02252 0.89899 1.06278 1.21526 0.92126 0.99358 0.92552 1.19609 0.94496 0.92130 1.09977 1.18219 0.86441 0.84671 0.75573 1.90773 1.15338 1.87991 1.52018 1.45910 1.10865 1.04960 1.73856 1.21015 0.96217 0.81558 0.97287 0.91327 1.22124 1.02277 1.01821 0.95385 1.21851 1.00381 0.98550 0.94609 1.21442 0.98814 0.98506 0.95707 1.21596 1.00066 0.99406 0.93909 1.20869 0.91852 0.91530 0.93651 1.42633 1.56647 1.30843 1.09050 1.19647 1.22165 1.07973 0.88304 0.90941 1.25592 1.01088 0.97692 1.02483 1.69805 1.38743 1.16538 1.36887 0.85130 0.76893 0.77837 0.79851 1.21441 1.21864 1.19420 1.21033 1.01614 0.89438 0.96370 1.16983 0.86859 0.82562 1.12088 1.91479 1.77019 1.49040 1.94674 0.90696 0.90290 0.86244 0.80243 0.81166 0.74802 0.90852 0.90498 0.93931 0.89491 0.89326 0.91329 0.92824 0.92546 0.91561 0.96267 0.97166 0.79379 0.93892 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.33 -5.15 10.35 -90.94 -0.94 -6.09 16 3 C 0.12 1.98 6.70 22.66 0.15 2.13 16 4 C -0.18 -1.86 9.01 22.32 0.20 -1.66 16 5 C -0.04 -0.40 9.53 22.51 0.21 -0.19 16 6 C -0.16 -2.82 5.87 -20.08 -0.12 -2.93 16 7 C 0.56 11.94 7.73 86.71 0.67 12.61 16 8 O -0.58 -17.18 16.00 -3.99 -0.06 -17.24 16 9 N -0.70 -10.80 4.48 -445.64 -2.00 -12.80 16 10 C 0.14 2.40 2.57 44.99 0.12 2.51 16 11 H 0.07 1.50 7.58 -2.39 -0.02 1.48 16 12 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 13 C -0.12 -1.78 4.75 30.59 0.15 -1.64 16 14 C -0.11 -2.27 5.10 30.59 0.16 -2.11 16 15 C -0.11 -3.24 5.33 30.59 0.16 -3.07 16 16 C 0.15 5.83 6.26 86.38 0.54 6.37 16 17 N -0.75 -38.51 5.60 -343.45 -1.92 -40.44 16 18 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 19 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 21 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 22 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C -0.06 -1.34 9.56 22.55 0.22 -1.12 16 27 C 0.03 0.72 7.30 22.41 0.16 0.89 16 28 F -0.14 -3.46 17.10 44.97 0.77 -2.69 16 29 H 0.07 0.26 7.66 -2.39 -0.02 0.24 16 30 H 0.08 0.18 7.64 -2.38 -0.02 0.16 16 31 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.18 0.60 6.27 -2.91 -0.02 0.59 16 33 H 0.17 0.68 6.39 -2.91 -0.02 0.67 16 34 H 0.41 3.82 6.62 -92.70 -0.61 3.20 16 35 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.35 7.75 -2.39 -0.02 1.33 16 41 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 46 H 0.37 20.20 7.67 -92.71 -0.71 19.49 16 47 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 48 H 0.14 3.18 7.64 -2.91 -0.02 3.16 16 Total: -1.00 -77.16 402.91 3.53 -73.63 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.34 Total: 22.41 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 5.72 Total: -5.91 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -3.64 Total: -112.22 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -1.00 Total: -23.33 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.77 Total: -2.69 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -77.16 3.53 -73.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171351498.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.522 kcal (2) G-P(sol) polarization free energy of solvation -77.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds