Wall clock time and date at job start Tue Mar 31 2020 22:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35716 * 116.99975 * 2 1 4 4 C 1.39096 * 119.88612 * 0.02621 * 3 2 1 5 5 C 1.37607 * 120.15900 * 179.97438 * 4 3 2 6 6 C 1.39811 * 119.93684 * 359.77208 * 5 4 3 7 7 C 1.47447 * 120.11433 * 180.25361 * 6 5 4 8 8 O 1.21608 * 120.00265 * 180.25157 * 7 6 5 9 9 N 1.34772 * 120.00134 * 0.25462 * 7 6 5 10 10 C 1.46506 * 120.00178 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46775 * 324.99465 * 10 9 7 12 12 C 1.52993 * 109.47224 * 84.99571 * 10 9 7 13 13 C 1.53003 * 109.46625 * 204.99642 * 10 9 7 14 14 C 1.53002 * 109.47355 * 65.00049 * 13 10 9 15 15 C 1.52993 * 109.47029 * 179.97438 * 14 13 10 16 16 C 1.53002 * 109.47029 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47219 * 179.97438 * 16 15 14 18 18 C 1.36937 * 119.99817 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00549 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99876 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00069 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46933 * 60.00610 * 22 20 18 24 24 H 1.48498 * 109.47189 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47165 * 300.00261 * 22 20 18 26 26 C 1.39993 * 119.77401 * 0.50011 * 6 5 4 27 27 F 1.35104 * 120.07800 * 179.74610 * 26 6 5 28 28 C 1.38055 * 119.84211 * 359.47754 * 26 6 5 29 29 H 1.09007 * 109.46991 * 299.99169 * 1 2 3 30 30 H 1.08997 * 109.47834 * 59.99698 * 1 2 3 31 31 H 1.08998 * 109.47444 * 180.02562 * 1 2 3 32 32 H 1.08006 * 119.92397 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.03211 * 180.02562 * 5 4 3 34 34 H 0.97007 * 119.99653 * 359.97438 * 9 7 6 35 35 H 1.08993 * 109.47226 * 299.99975 * 12 10 9 36 36 H 1.08996 * 109.47332 * 60.00234 * 12 10 9 37 37 H 1.09004 * 109.47247 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.46360 * 184.99335 * 13 10 9 39 39 H 1.08994 * 109.47257 * 304.99706 * 13 10 9 40 40 H 1.09005 * 109.46742 * 299.99768 * 14 13 10 41 41 H 1.09003 * 109.47060 * 59.99056 * 14 13 10 42 42 H 1.08996 * 109.47112 * 299.99534 * 15 14 13 43 43 H 1.08994 * 109.47237 * 59.99870 * 15 14 13 44 44 H 1.09005 * 109.46742 * 299.99992 * 16 15 14 45 45 H 1.08994 * 109.47320 * 59.99312 * 16 15 14 46 46 H 0.96998 * 119.99613 * 359.97438 * 17 16 15 47 47 H 0.97009 * 119.99942 * 180.02562 * 21 20 18 48 48 H 1.07995 * 119.96940 * 180.25041 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2852 2.3743 0.0006 5 6 1.9041 3.6033 0.0011 6 6 3.3000 3.6816 0.0059 7 6 3.9672 4.9965 0.0121 8 8 5.1815 5.0622 0.0117 9 7 3.2313 6.1255 0.0184 10 6 3.8942 7.4320 0.0240 11 1 4.8098 7.3723 0.6123 12 6 4.2356 7.8369 -1.4113 13 6 2.9596 8.4754 0.6397 14 6 2.7178 8.1378 2.1123 15 6 1.7838 9.1815 2.7279 16 6 1.5414 8.8436 4.2004 17 7 0.6475 9.8432 4.7901 18 6 0.2860 9.7462 6.1073 19 1 0.6594 8.9325 6.7114 20 6 -0.5606 10.6937 6.6663 21 7 -1.0161 11.6851 5.9301 22 14 -1.0544 10.5610 8.4630 23 1 0.1601 10.6177 9.3156 24 1 -1.9570 11.6871 8.8127 25 1 -1.7583 9.2732 8.6890 26 6 4.0621 2.5074 -0.0005 27 9 5.4115 2.5759 -0.0010 28 6 3.4317 1.2792 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2068 2.3142 0.0006 33 1 1.3121 4.5066 0.0019 34 1 2.2626 6.0731 0.0184 35 1 4.9013 7.0936 -1.8499 36 1 3.3200 7.8967 -1.9996 37 1 4.7285 8.8091 -1.4072 38 1 3.4164 9.4621 0.5634 39 1 2.0096 8.4724 0.1055 40 1 2.2611 7.1510 2.1885 41 1 3.6679 8.1407 2.6465 42 1 2.2408 10.1681 2.6517 43 1 0.8337 9.1789 2.1938 44 1 1.0842 7.8569 4.2762 45 1 2.4914 8.8457 4.7348 46 1 0.3118 10.5738 4.2475 47 1 -1.6074 12.3475 6.3207 48 1 4.0176 0.3720 -0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171698437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:05 Heat of formation + Delta-G solvation = -98.646855 kcal Electronic energy + Delta-G solvation = -28360.161311 eV Core-core repulsion = 24136.772577 eV Total energy + Delta-G solvation = -4223.388734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.17918 -40.82945 -39.91768 -37.62863 -36.82888 -35.25734 -33.33386 -32.21181 -31.19571 -30.60775 -29.96277 -27.94532 -27.44471 -24.49811 -24.02426 -23.19914 -22.12205 -21.13496 -20.76421 -20.62350 -19.07730 -18.00912 -17.43004 -16.99272 -16.52205 -16.48751 -16.23463 -15.83865 -15.29203 -15.20990 -15.04591 -14.83530 -14.64262 -14.11014 -13.90907 -13.53400 -13.41044 -13.16264 -13.04559 -12.98161 -12.93868 -12.79952 -12.71941 -12.33330 -11.76546 -11.62066 -11.55028 -11.42741 -11.26185 -10.98923 -10.79353 -10.70485 -10.43640 -10.30492 -10.09112 -10.00115 -9.65953 -9.44363 -9.27599 -8.84925 -8.83336 -6.89909 -5.74986 -3.03335 0.32709 0.63370 2.48314 2.50747 2.89959 3.30320 3.44840 3.48824 3.50195 3.83494 4.07763 4.31305 4.35333 4.53180 4.54755 4.61472 4.66229 4.68960 4.78865 4.90284 4.96899 4.98868 5.26082 5.30532 5.39581 5.43867 5.47156 5.54019 5.55493 5.61602 5.64908 5.70213 5.79077 5.91077 5.96597 6.07461 6.11267 6.22331 6.30985 6.38239 6.39240 6.47350 6.67200 6.90345 6.94214 7.27509 7.70926 8.01511 8.44536 9.55111 10.14441 10.49092 11.48079 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.002169 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.971712 B =12903.828774 C =14843.845066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.184 3.816 4 C -0.227 4.227 5 C -0.014 4.014 6 C -0.212 4.212 7 C 0.562 3.438 8 O -0.529 6.529 9 N -0.717 5.717 10 C 0.142 3.858 11 H 0.091 0.909 12 C -0.163 4.163 13 C -0.127 4.127 14 C -0.115 4.115 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.202 3.798 27 F -0.108 7.108 28 C -0.204 4.204 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.398 0.602 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.825 -21.505 -19.980 29.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.221 6.221 3 C 0.137 3.863 4 C -0.246 4.246 5 C -0.032 4.032 6 C -0.217 4.217 7 C 0.350 3.650 8 O -0.406 6.406 9 N -0.370 5.370 10 C 0.038 3.962 11 H 0.109 0.891 12 C -0.221 4.221 13 C -0.165 4.165 14 C -0.153 4.153 15 C -0.163 4.163 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.181 3.819 27 F -0.086 7.086 28 C -0.223 4.223 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.234 0.766 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.216 0.784 47 H 0.065 0.935 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.820 -21.677 -19.802 29.932 hybrid contribution -1.028 0.301 0.876 1.384 sum 4.792 -21.376 -18.926 28.950 Atomic orbital electron populations 1.23221 0.77214 1.04696 1.02063 1.86060 1.22317 1.26333 1.87383 1.18843 0.91356 0.84634 0.91466 1.21253 1.00984 0.91675 1.10676 1.20988 0.92191 0.98092 0.91966 1.19959 0.94143 0.93101 1.14450 1.17841 0.86936 0.83629 0.76640 1.90847 1.13135 1.87289 1.49318 1.45976 1.10070 1.05580 1.75360 1.21075 0.96945 0.81381 0.96839 0.89135 1.22175 1.01787 1.01889 0.96284 1.21945 0.99441 0.98546 0.96538 1.21529 1.00222 0.99315 0.94220 1.21723 0.98958 0.98591 0.97045 1.20650 0.93406 0.92751 0.90731 1.42382 1.55929 1.29742 1.09835 1.19212 1.22762 1.07959 0.87086 0.91295 1.24750 1.00561 0.97669 0.98188 1.69656 1.37906 1.15502 1.35363 0.86252 0.78051 0.76877 0.84940 1.21261 1.21664 1.21285 1.17212 0.77507 0.92123 0.95048 1.91625 1.27593 1.96974 1.92366 1.20211 0.92554 0.97677 1.11887 0.91860 0.92016 0.87662 0.83944 0.84134 0.76630 0.92213 0.92495 0.91419 0.90071 0.91348 0.92177 0.91904 0.92023 0.92157 0.96661 0.96563 0.78353 0.93497 0.83165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.80 101.05 0.99 1.07 16 2 O -0.31 -2.18 10.48 -18.85 -0.20 -2.38 16 3 C 0.18 1.44 6.69 -39.04 -0.26 1.17 16 4 C -0.23 -1.48 9.01 -39.49 -0.36 -1.83 16 5 C -0.01 -0.10 9.53 -39.22 -0.37 -0.47 16 6 C -0.21 -2.17 5.88 -104.90 -0.62 -2.79 16 7 C 0.56 6.80 7.73 -12.51 -0.10 6.70 16 8 O -0.53 -8.40 14.99 5.27 0.08 -8.32 16 9 N -0.72 -6.81 4.48 -54.87 -0.25 -7.05 16 10 C 0.14 1.40 2.58 -67.93 -0.17 1.23 16 11 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 12 C -0.16 -1.46 9.48 37.15 0.35 -1.10 16 13 C -0.13 -1.22 4.75 -26.73 -0.13 -1.34 16 14 C -0.11 -1.40 5.10 -26.73 -0.14 -1.54 16 15 C -0.13 -1.97 5.33 -26.73 -0.14 -2.11 16 16 C 0.15 3.13 6.26 -4.04 -0.03 3.10 16 17 N -0.73 -19.17 5.60 -59.91 -0.34 -19.50 16 18 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 21 N -0.94 -28.66 13.06 55.49 0.72 -27.93 16 22 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 C 0.20 2.20 7.28 -38.99 -0.28 1.92 16 27 F -0.11 -1.42 15.54 2.25 0.03 -1.38 16 28 C -0.20 -1.80 9.95 -39.43 -0.39 -2.20 16 29 H 0.06 0.18 7.65 -51.93 -0.40 -0.22 16 30 H 0.06 0.14 7.65 -51.93 -0.40 -0.26 16 31 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.14 0.56 6.27 -52.48 -0.33 0.24 16 33 H 0.14 0.65 6.39 -52.49 -0.34 0.32 16 34 H 0.40 2.79 6.62 -40.82 -0.27 2.52 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.38 10.40 7.67 -40.82 -0.31 10.08 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 48 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -35.49 401.23 -8.27 -43.75 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.46 Total: 4.89 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.89 Total: -5.77 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.14 Total: -54.49 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.12 Total: -10.70 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.03 Total: -1.38 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.49 -8.27 -43.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171698437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.892 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds