Wall clock time and date at job start Tue Mar 31 2020 22:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35716 * 116.99975 * 2 1 4 4 C 1.39096 * 119.88612 * 0.02621 * 3 2 1 5 5 C 1.37607 * 120.15900 * 179.97438 * 4 3 2 6 6 C 1.39811 * 119.93684 * 359.77208 * 5 4 3 7 7 C 1.47447 * 120.11433 * 180.25361 * 6 5 4 8 8 O 1.21608 * 120.00265 * 180.25157 * 7 6 5 9 9 N 1.34772 * 120.00134 * 0.25462 * 7 6 5 10 10 C 1.46506 * 120.00178 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46775 * 324.99465 * 10 9 7 12 12 C 1.52993 * 109.47224 * 84.99571 * 10 9 7 13 13 C 1.53003 * 109.46625 * 204.99642 * 10 9 7 14 14 C 1.53002 * 109.47355 * 65.00049 * 13 10 9 15 15 C 1.52993 * 109.47029 * 179.97438 * 14 13 10 16 16 C 1.53002 * 109.47029 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47219 * 179.97438 * 16 15 14 18 18 C 1.36937 * 119.99817 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00549 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99876 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00069 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46933 * 60.00610 * 22 20 18 24 24 H 1.48498 * 109.47189 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47165 * 300.00261 * 22 20 18 26 26 C 1.39993 * 119.77401 * 0.50011 * 6 5 4 27 27 F 1.35104 * 120.07800 * 179.74610 * 26 6 5 28 28 C 1.38055 * 119.84211 * 359.47754 * 26 6 5 29 29 H 1.09007 * 109.46991 * 299.99169 * 1 2 3 30 30 H 1.08997 * 109.47834 * 59.99698 * 1 2 3 31 31 H 1.08998 * 109.47444 * 180.02562 * 1 2 3 32 32 H 1.08006 * 119.92397 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.03211 * 180.02562 * 5 4 3 34 34 H 0.97007 * 119.99653 * 359.97438 * 9 7 6 35 35 H 1.08993 * 109.47226 * 299.99975 * 12 10 9 36 36 H 1.08996 * 109.47332 * 60.00234 * 12 10 9 37 37 H 1.09004 * 109.47247 * 179.97438 * 12 10 9 38 38 H 1.09001 * 109.46360 * 184.99335 * 13 10 9 39 39 H 1.08994 * 109.47257 * 304.99706 * 13 10 9 40 40 H 1.09005 * 109.46742 * 299.99768 * 14 13 10 41 41 H 1.09003 * 109.47060 * 59.99056 * 14 13 10 42 42 H 1.08996 * 109.47112 * 299.99534 * 15 14 13 43 43 H 1.08994 * 109.47237 * 59.99870 * 15 14 13 44 44 H 1.09005 * 109.46742 * 299.99992 * 16 15 14 45 45 H 1.08994 * 109.47320 * 59.99312 * 16 15 14 46 46 H 0.96998 * 119.99613 * 359.97438 * 17 16 15 47 47 H 0.97009 * 119.99942 * 180.02562 * 21 20 18 48 48 H 1.07995 * 119.96940 * 180.25041 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2852 2.3743 0.0006 5 6 1.9041 3.6033 0.0011 6 6 3.3000 3.6816 0.0059 7 6 3.9672 4.9965 0.0121 8 8 5.1815 5.0622 0.0117 9 7 3.2313 6.1255 0.0184 10 6 3.8942 7.4320 0.0240 11 1 4.8098 7.3723 0.6123 12 6 4.2356 7.8369 -1.4113 13 6 2.9596 8.4754 0.6397 14 6 2.7178 8.1378 2.1123 15 6 1.7838 9.1815 2.7279 16 6 1.5414 8.8436 4.2004 17 7 0.6475 9.8432 4.7901 18 6 0.2860 9.7462 6.1073 19 1 0.6594 8.9325 6.7114 20 6 -0.5606 10.6937 6.6663 21 7 -1.0161 11.6851 5.9301 22 14 -1.0544 10.5610 8.4630 23 1 0.1601 10.6177 9.3156 24 1 -1.9570 11.6871 8.8127 25 1 -1.7583 9.2732 8.6890 26 6 4.0621 2.5074 -0.0005 27 9 5.4115 2.5759 -0.0010 28 6 3.4317 1.2792 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 0.2068 2.3142 0.0006 33 1 1.3121 4.5066 0.0019 34 1 2.2626 6.0731 0.0184 35 1 4.9013 7.0936 -1.8499 36 1 3.3200 7.8967 -1.9996 37 1 4.7285 8.8091 -1.4072 38 1 3.4164 9.4621 0.5634 39 1 2.0096 8.4724 0.1055 40 1 2.2611 7.1510 2.1885 41 1 3.6679 8.1407 2.6465 42 1 2.2408 10.1681 2.6517 43 1 0.8337 9.1789 2.1938 44 1 1.0842 7.8569 4.2762 45 1 2.4914 8.8457 4.7348 46 1 0.3118 10.5738 4.2475 47 1 -1.6074 12.3475 6.3207 48 1 4.0176 0.3720 -0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171698437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:04 Heat of formation + Delta-G solvation = -121.779096 kcal Electronic energy + Delta-G solvation = -28361.164400 eV Core-core repulsion = 24136.772577 eV Total energy + Delta-G solvation = -4224.391823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.04028 -41.48211 -40.66884 -38.32010 -37.82510 -36.81332 -34.80305 -33.30610 -32.31987 -31.64504 -30.79598 -28.80950 -28.30155 -25.96393 -24.94044 -24.03178 -23.42794 -22.09366 -21.93087 -21.54596 -19.67789 -19.12236 -18.73927 -18.09515 -17.26903 -17.09818 -16.98440 -16.68466 -16.50764 -16.24924 -16.04618 -15.80972 -15.67490 -15.38253 -15.25749 -14.76015 -14.57131 -14.18063 -14.04497 -14.01681 -13.67714 -13.39212 -13.22726 -13.20866 -13.01215 -12.87593 -12.83293 -12.44363 -12.27361 -12.19609 -12.07667 -12.01362 -11.87315 -11.79840 -11.48160 -11.39066 -11.02026 -10.92689 -10.15289 -10.09108 -9.45491 -9.01111 -7.96275 -5.25447 -0.36373 0.01646 1.46721 1.50097 1.56383 1.71856 2.01919 2.13214 2.55639 2.57727 3.18798 3.36845 3.51944 3.57686 3.69229 3.81921 4.04312 4.06691 4.08284 4.13985 4.15892 4.36036 4.39354 4.42663 4.43710 4.61180 4.66392 4.72101 4.76298 4.79103 4.86086 4.89205 4.94035 4.96330 5.00411 5.03848 5.06109 5.13671 5.28188 5.33159 5.43283 5.45372 5.46253 5.54406 5.58291 6.19380 6.26687 6.50616 7.18933 7.32409 8.09250 8.32847 9.27117 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.002169 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.971712 B =12903.828774 C =14843.845066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.185 3.815 4 C -0.217 4.217 5 C -0.005 4.005 6 C -0.231 4.231 7 C 0.558 3.442 8 O -0.578 6.578 9 N -0.704 5.704 10 C 0.144 3.856 11 H 0.066 0.934 12 C -0.157 4.157 13 C -0.115 4.115 14 C -0.106 4.106 15 C -0.111 4.111 16 C 0.147 3.853 17 N -0.749 5.749 18 C -0.251 4.251 19 H 0.072 0.928 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.975 3.025 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.276 1.276 26 C 0.174 3.826 27 F -0.131 7.131 28 C -0.211 4.211 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.176 0.824 33 H 0.171 0.829 34 H 0.413 0.587 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.019 0.981 45 H 0.010 0.990 46 H 0.374 0.626 47 H 0.253 0.747 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.595 -22.256 -20.377 30.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.235 6.235 3 C 0.138 3.862 4 C -0.235 4.235 5 C -0.023 4.023 6 C -0.235 4.235 7 C 0.347 3.653 8 O -0.459 6.459 9 N -0.356 5.356 10 C 0.039 3.961 11 H 0.084 0.916 12 C -0.215 4.215 13 C -0.153 4.153 14 C -0.145 4.145 15 C -0.149 4.149 16 C 0.021 3.979 17 N -0.391 5.391 18 C -0.383 4.383 19 H 0.090 0.910 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.803 3.197 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.202 1.202 26 C 0.153 3.847 27 F -0.110 7.110 28 C -0.230 4.230 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.139 0.861 32 H 0.193 0.807 33 H 0.188 0.812 34 H 0.251 0.749 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.037 0.963 45 H 0.028 0.972 46 H 0.206 0.794 47 H 0.061 0.939 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.571 -22.459 -20.210 30.424 hybrid contribution -0.391 0.429 0.984 1.142 sum 3.180 -22.030 -19.226 29.412 Atomic orbital electron populations 1.23555 0.75152 1.06296 1.03259 1.86058 1.24449 1.25986 1.86967 1.18957 0.91025 0.85601 0.90628 1.21614 1.02499 0.90655 1.08762 1.21300 0.90823 0.99706 0.90491 1.19967 0.95470 0.91801 1.16245 1.18190 0.86505 0.84770 0.75871 1.90816 1.15279 1.87994 1.51803 1.45875 1.10720 1.04864 1.74188 1.21005 0.96193 0.81607 0.97255 0.91622 1.22114 1.02257 1.01717 0.95434 1.21845 1.00354 0.98511 0.94575 1.21440 0.98802 0.98534 0.95684 1.21590 1.00050 0.99352 0.93926 1.20861 0.91862 0.91622 0.93532 1.42619 1.56685 1.30596 1.09242 1.19615 1.22394 1.07846 0.88437 0.90968 1.25603 1.01049 0.97592 1.02561 1.69809 1.38740 1.16303 1.37115 0.85192 0.77692 0.76986 0.79785 1.20559 1.21849 1.20156 1.17557 0.76787 0.93382 0.96963 1.91556 1.29373 1.97150 1.92886 1.20291 0.93555 0.97131 1.12040 0.90881 0.90459 0.86108 0.80667 0.81168 0.74883 0.94193 0.90759 0.90413 0.89426 0.89243 0.91427 0.92952 0.92496 0.91494 0.96289 0.97223 0.79367 0.93868 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.80 113.37 1.11 1.15 16 2 O -0.32 -3.91 10.48 -90.38 -0.95 -4.85 16 3 C 0.19 2.59 6.69 22.62 0.15 2.74 16 4 C -0.22 -2.16 9.01 22.33 0.20 -1.96 16 5 C 0.00 -0.06 9.53 22.50 0.21 0.16 16 6 C -0.23 -4.67 5.88 -20.05 -0.12 -4.79 16 7 C 0.56 13.65 7.73 86.67 0.67 14.32 16 8 O -0.58 -19.44 14.99 -4.06 -0.06 -19.50 16 9 N -0.70 -12.42 4.48 -445.78 -2.00 -14.41 16 10 C 0.14 2.68 2.58 44.99 0.12 2.80 16 11 H 0.07 1.59 7.58 -2.39 -0.02 1.57 16 12 C -0.16 -2.60 9.48 71.98 0.68 -1.92 16 13 C -0.12 -1.92 4.75 30.60 0.15 -1.78 16 14 C -0.11 -2.40 5.10 30.59 0.16 -2.24 16 15 C -0.11 -3.31 5.33 30.59 0.16 -3.15 16 16 C 0.15 5.95 6.26 86.38 0.54 6.49 16 17 N -0.75 -38.89 5.60 -343.44 -1.92 -40.81 16 18 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 19 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 21 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 22 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 C 0.17 3.96 7.28 22.65 0.16 4.13 16 27 F -0.13 -3.78 15.54 44.97 0.70 -3.08 16 28 C -0.21 -3.77 9.95 22.37 0.22 -3.55 16 29 H 0.07 0.15 7.65 -2.38 -0.02 0.13 16 30 H 0.08 0.07 7.65 -2.39 -0.02 0.05 16 31 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.18 0.57 6.27 -2.91 -0.02 0.55 16 33 H 0.17 0.90 6.39 -2.91 -0.02 0.88 16 34 H 0.41 4.60 6.62 -92.70 -0.61 3.99 16 35 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.43 7.75 -2.38 -0.02 1.41 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.37 20.38 7.67 -92.71 -0.71 19.67 16 47 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 48 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -78.82 401.23 3.46 -75.35 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.35 Total: 23.30 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 5.73 Total: -5.04 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -3.64 Total: -114.47 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.01 Total: -24.36 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.70 Total: -3.08 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -78.82 3.46 -75.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171698437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.426 kcal (2) G-P(sol) polarization free energy of solvation -78.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds