Wall clock time and date at job start Tue Mar 31 2020 22:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35965 * 117.00115 * 2 1 4 4 C 1.38312 * 119.99185 * 359.97438 * 3 2 1 5 5 C 1.39614 * 119.81882 * 179.70401 * 4 3 2 6 6 C 1.47727 * 120.09939 * 180.29785 * 5 4 3 7 7 O 1.21571 * 120.00222 * 0.29767 * 6 5 4 8 8 N 1.34781 * 120.00397 * 180.29610 * 6 5 4 9 9 C 1.46494 * 120.00352 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47062 * 35.00516 * 9 8 6 11 11 C 1.52999 * 109.47313 * 275.00334 * 9 8 6 12 12 C 1.52996 * 109.47170 * 155.00038 * 9 8 6 13 13 C 1.53000 * 109.47428 * 295.00384 * 12 9 8 14 14 C 1.52997 * 109.47506 * 179.97438 * 13 12 9 15 15 C 1.53000 * 109.47506 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.47411 * 180.02562 * 15 14 13 17 17 C 1.36936 * 120.00106 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99827 * 179.97438 * 17 16 15 20 20 N 1.31612 * 120.00316 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99880 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47152 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47008 * 120.00394 * 21 19 17 24 24 H 1.48497 * 109.47421 * 240.00326 * 21 19 17 25 25 C 1.39645 * 119.80289 * 0.60071 * 5 4 3 26 26 C 1.37895 * 119.98382 * 359.41673 * 25 5 4 27 27 C 1.38530 * 120.17597 * 0.28895 * 26 25 5 28 28 F 1.35099 * 119.90048 * 179.97438 * 27 26 25 29 29 H 1.08997 * 109.47134 * 60.00111 * 1 2 3 30 30 H 1.08993 * 109.47481 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46668 * 300.00084 * 1 2 3 32 32 H 1.08000 * 120.09306 * 359.97438 * 4 3 2 33 33 H 0.97004 * 119.99521 * 0.02562 * 8 6 5 34 34 H 1.08997 * 109.47251 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.47205 * 300.00095 * 11 9 8 36 36 H 1.09000 * 109.47421 * 60.00214 * 11 9 8 37 37 H 1.09008 * 109.46757 * 55.00129 * 12 9 8 38 38 H 1.08998 * 109.47522 * 175.00116 * 12 9 8 39 39 H 1.09001 * 109.47218 * 299.99867 * 13 12 9 40 40 H 1.09006 * 109.46968 * 59.99708 * 13 12 9 41 41 H 1.09001 * 109.47087 * 300.00331 * 14 13 12 42 42 H 1.09006 * 109.46932 * 60.00070 * 14 13 12 43 43 H 1.08996 * 109.46770 * 300.00364 * 15 14 13 44 44 H 1.08998 * 109.46987 * 59.99789 * 15 14 13 45 45 H 0.97005 * 120.00050 * 0.02562 * 16 15 14 46 46 H 0.96996 * 120.00649 * 179.97438 * 20 19 17 47 47 H 1.08002 * 120.01145 * 179.70360 * 25 5 4 48 48 H 1.07993 * 119.91251 * 180.25917 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2929 2.3713 -0.0005 5 6 1.9305 3.6134 0.0057 6 6 1.1318 4.8561 0.0118 7 8 -0.0825 4.7983 0.0169 8 7 1.7493 6.0542 0.0118 9 6 0.9573 7.2865 0.0173 10 1 0.0550 7.1359 0.6100 11 6 0.5702 7.6504 -1.4174 12 6 1.7837 8.4211 0.6260 13 6 2.0650 8.1142 2.0983 14 6 2.8920 9.2485 2.7068 15 6 3.1728 8.9419 4.1792 16 7 3.9640 10.0283 4.7620 17 6 4.3378 9.9733 6.0782 18 1 4.0496 9.1288 6.6866 19 6 5.0880 11.0025 6.6303 20 7 5.4397 12.0315 5.8889 21 14 5.5985 10.9271 8.4256 22 1 5.0814 9.6755 9.0352 23 1 7.0803 10.9478 8.5202 24 1 5.0400 12.0978 9.1487 25 6 3.3254 3.6775 -0.0002 26 6 4.0687 2.5160 -0.0001 27 6 3.4353 1.2840 -0.0001 28 9 4.1689 0.1495 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2143 2.3164 -0.0014 33 1 2.7182 6.1003 0.0075 34 1 -0.0195 8.5671 -1.4133 35 1 1.4725 7.8011 -2.0101 36 1 -0.0186 6.8421 -1.8511 37 1 2.7269 8.5130 0.0873 38 1 1.2289 9.3563 0.5494 39 1 1.1219 8.0223 2.6369 40 1 2.6199 7.1791 2.1748 41 1 3.8351 9.3401 2.1680 42 1 2.3375 10.1839 2.6302 43 1 2.2295 8.8507 4.7176 44 1 3.7270 8.0065 4.2562 45 1 4.2226 10.7871 4.2157 46 1 5.9636 12.7509 6.2747 47 1 3.8221 4.6365 -0.0002 48 1 5.1474 2.5669 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175396731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:25 Heat of formation + Delta-G solvation = -99.779813 kcal Electronic energy + Delta-G solvation = -28218.283627 eV Core-core repulsion = 23994.845765 eV Total energy + Delta-G solvation = -4223.437863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.24677 -40.90027 -39.80658 -37.76747 -36.94718 -35.30758 -33.36301 -32.08167 -31.20276 -30.67399 -30.03838 -27.82574 -27.47838 -24.69243 -24.03698 -23.02901 -22.24297 -21.25592 -20.82485 -20.66762 -19.11098 -17.86056 -17.34143 -17.04521 -16.86707 -16.64328 -16.41761 -15.50039 -15.28122 -15.09991 -15.04105 -14.76662 -14.73030 -14.44110 -14.00823 -13.60207 -13.40325 -13.30222 -13.14829 -13.03919 -12.97378 -12.68171 -12.41070 -12.18977 -11.82390 -11.75059 -11.65264 -11.49158 -11.29780 -11.02555 -10.83008 -10.73444 -10.42862 -10.34224 -10.25483 -9.97267 -9.68044 -9.51687 -9.32315 -8.86488 -8.75850 -6.90479 -5.75769 -3.04108 0.18547 0.69584 2.36728 2.59612 2.80197 3.27344 3.43697 3.49285 3.51654 3.66984 4.14599 4.22672 4.43543 4.49685 4.51561 4.63736 4.71148 4.72245 4.84152 4.93402 4.96635 5.05981 5.21169 5.28784 5.35116 5.38950 5.40780 5.52283 5.55126 5.59399 5.64121 5.68070 5.75334 5.85483 5.91836 6.00688 6.06496 6.16795 6.28453 6.32131 6.37270 6.45101 6.70820 6.88767 6.92596 7.17830 7.71464 7.87394 8.43648 9.54481 10.13642 10.48105 11.47389 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.002029 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.945729 B =13799.787739 C =15424.931779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.088 3.912 4 C -0.124 4.124 5 C -0.105 4.105 6 C 0.561 3.439 7 O -0.536 6.536 8 N -0.714 5.714 9 C 0.140 3.860 10 H 0.091 0.909 11 C -0.163 4.163 12 C -0.127 4.127 13 C -0.115 4.115 14 C -0.126 4.126 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.017 4.017 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.092 4.092 26 C -0.121 4.121 27 C 0.094 3.906 28 F -0.127 7.127 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.152 0.848 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.141 0.859 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.030 -20.854 -19.901 30.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.042 3.958 4 C -0.144 4.144 5 C -0.108 4.108 6 C 0.348 3.652 7 O -0.414 6.414 8 N -0.366 5.366 9 C 0.037 3.963 10 H 0.109 0.891 11 C -0.222 4.222 12 C -0.165 4.165 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.025 3.975 16 N -0.379 5.379 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.111 4.111 26 C -0.139 4.139 27 C 0.074 3.926 28 F -0.105 7.105 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.170 0.830 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.159 0.841 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.793 -21.169 -19.717 30.542 hybrid contribution 0.845 0.238 0.866 1.233 sum -8.948 -20.930 -18.851 29.556 Atomic orbital electron populations 1.23197 0.77359 1.04574 1.02030 1.86153 1.22168 1.25160 1.88673 1.18865 0.90752 0.85781 1.00434 1.21230 1.01296 0.89903 1.01967 1.19809 0.93537 0.93394 1.04066 1.18071 0.87407 0.83357 0.76381 1.90780 1.13548 1.87307 1.49749 1.46031 1.10578 1.05424 1.74561 1.21106 0.95270 0.83029 0.96940 0.89097 1.22179 1.01755 1.02024 0.96204 1.21953 1.00302 0.97665 0.96618 1.21532 1.00538 0.99041 0.94193 1.21727 0.99553 0.97956 0.97106 1.20647 0.94191 0.91960 0.90748 1.42396 1.63267 1.22294 1.09949 1.19298 1.26705 1.03782 0.87101 0.91180 1.24755 1.01217 0.97062 0.98211 1.69665 1.43157 1.10355 1.35175 0.86110 0.77987 0.77209 0.84870 1.20556 1.21859 1.21856 1.21119 0.92303 0.98707 0.99000 1.20988 1.01580 0.89741 1.01626 1.17224 0.85986 0.83125 1.06298 1.91531 1.76514 1.48696 1.93802 0.92115 0.87634 0.92009 0.83027 0.76311 0.91347 0.92383 0.92249 0.91254 0.90015 0.91922 0.92138 0.92103 0.92030 0.96586 0.96618 0.78352 0.93592 0.84130 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.87 10.36 -19.63 -0.20 -3.07 16 3 C 0.09 0.84 6.69 -39.24 -0.26 0.57 16 4 C -0.12 -1.14 8.58 -39.04 -0.33 -1.47 16 5 C -0.10 -0.95 5.87 -104.98 -0.62 -1.56 16 6 C 0.56 5.88 7.73 -12.38 -0.10 5.79 16 7 O -0.54 -7.32 16.00 5.30 0.08 -7.24 16 8 N -0.71 -6.04 4.48 -54.79 -0.25 -6.29 16 9 C 0.14 1.26 2.57 -67.94 -0.17 1.08 16 10 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 11 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 12 C -0.13 -1.14 4.75 -26.73 -0.13 -1.27 16 13 C -0.11 -1.34 5.10 -26.73 -0.14 -1.47 16 14 C -0.13 -1.93 5.33 -26.73 -0.14 -2.07 16 15 C 0.15 3.09 6.26 -4.05 -0.03 3.06 16 16 N -0.74 -19.04 5.60 -59.92 -0.34 -19.38 16 17 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 19 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 20 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 21 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 C -0.09 -0.65 9.53 -39.18 -0.37 -1.02 16 26 C -0.12 -0.88 10.00 -39.60 -0.40 -1.27 16 27 C 0.09 0.88 7.31 -39.16 -0.29 0.59 16 28 F -0.13 -1.34 17.10 2.25 0.04 -1.30 16 29 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 32 H 0.15 1.31 5.88 -52.49 -0.31 1.00 16 33 H 0.40 2.52 6.63 -40.82 -0.27 2.25 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.14 0.63 6.39 -52.49 -0.34 0.30 16 48 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 402.98 15.07 6.07 6.07 Total: -1.00 -34.75 402.98 -8.20 -42.95 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.44 Total: 4.89 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.87 Total: -6.42 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.14 Total: -53.51 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.12 Total: -10.31 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.75 -8.20 -42.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175396731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.832 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds