Wall clock time and date at job start Tue Mar 31 2020 22:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35965 * 117.00115 * 2 1 4 4 C 1.38312 * 119.99185 * 359.97438 * 3 2 1 5 5 C 1.39614 * 119.81882 * 179.70401 * 4 3 2 6 6 C 1.47727 * 120.09939 * 180.29785 * 5 4 3 7 7 O 1.21571 * 120.00222 * 0.29767 * 6 5 4 8 8 N 1.34781 * 120.00397 * 180.29610 * 6 5 4 9 9 C 1.46494 * 120.00352 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47062 * 35.00516 * 9 8 6 11 11 C 1.52999 * 109.47313 * 275.00334 * 9 8 6 12 12 C 1.52996 * 109.47170 * 155.00038 * 9 8 6 13 13 C 1.53000 * 109.47428 * 295.00384 * 12 9 8 14 14 C 1.52997 * 109.47506 * 179.97438 * 13 12 9 15 15 C 1.53000 * 109.47506 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.47411 * 180.02562 * 15 14 13 17 17 C 1.36936 * 120.00106 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99827 * 179.97438 * 17 16 15 20 20 N 1.31612 * 120.00316 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99880 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47152 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47008 * 120.00394 * 21 19 17 24 24 H 1.48497 * 109.47421 * 240.00326 * 21 19 17 25 25 C 1.39645 * 119.80289 * 0.60071 * 5 4 3 26 26 C 1.37895 * 119.98382 * 359.41673 * 25 5 4 27 27 C 1.38530 * 120.17597 * 0.28895 * 26 25 5 28 28 F 1.35099 * 119.90048 * 179.97438 * 27 26 25 29 29 H 1.08997 * 109.47134 * 60.00111 * 1 2 3 30 30 H 1.08993 * 109.47481 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46668 * 300.00084 * 1 2 3 32 32 H 1.08000 * 120.09306 * 359.97438 * 4 3 2 33 33 H 0.97004 * 119.99521 * 0.02562 * 8 6 5 34 34 H 1.08997 * 109.47251 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.47205 * 300.00095 * 11 9 8 36 36 H 1.09000 * 109.47421 * 60.00214 * 11 9 8 37 37 H 1.09008 * 109.46757 * 55.00129 * 12 9 8 38 38 H 1.08998 * 109.47522 * 175.00116 * 12 9 8 39 39 H 1.09001 * 109.47218 * 299.99867 * 13 12 9 40 40 H 1.09006 * 109.46968 * 59.99708 * 13 12 9 41 41 H 1.09001 * 109.47087 * 300.00331 * 14 13 12 42 42 H 1.09006 * 109.46932 * 60.00070 * 14 13 12 43 43 H 1.08996 * 109.46770 * 300.00364 * 15 14 13 44 44 H 1.08998 * 109.46987 * 59.99789 * 15 14 13 45 45 H 0.97005 * 120.00050 * 0.02562 * 16 15 14 46 46 H 0.96996 * 120.00649 * 179.97438 * 20 19 17 47 47 H 1.08002 * 120.01145 * 179.70360 * 25 5 4 48 48 H 1.07993 * 119.91251 * 180.25917 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2929 2.3713 -0.0005 5 6 1.9305 3.6134 0.0057 6 6 1.1318 4.8561 0.0118 7 8 -0.0825 4.7983 0.0169 8 7 1.7493 6.0542 0.0118 9 6 0.9573 7.2865 0.0173 10 1 0.0550 7.1359 0.6100 11 6 0.5702 7.6504 -1.4174 12 6 1.7837 8.4211 0.6260 13 6 2.0650 8.1142 2.0983 14 6 2.8920 9.2485 2.7068 15 6 3.1728 8.9419 4.1792 16 7 3.9640 10.0283 4.7620 17 6 4.3378 9.9733 6.0782 18 1 4.0496 9.1288 6.6866 19 6 5.0880 11.0025 6.6303 20 7 5.4397 12.0315 5.8889 21 14 5.5985 10.9271 8.4256 22 1 5.0814 9.6755 9.0352 23 1 7.0803 10.9478 8.5202 24 1 5.0400 12.0978 9.1487 25 6 3.3254 3.6775 -0.0002 26 6 4.0687 2.5160 -0.0001 27 6 3.4353 1.2840 -0.0001 28 9 4.1689 0.1495 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2143 2.3164 -0.0014 33 1 2.7182 6.1003 0.0075 34 1 -0.0195 8.5671 -1.4133 35 1 1.4725 7.8011 -2.0101 36 1 -0.0186 6.8421 -1.8511 37 1 2.7269 8.5130 0.0873 38 1 1.2289 9.3563 0.5494 39 1 1.1219 8.0223 2.6369 40 1 2.6199 7.1791 2.1748 41 1 3.8351 9.3401 2.1680 42 1 2.3375 10.1839 2.6302 43 1 2.2295 8.8507 4.7176 44 1 3.7270 8.0065 4.2562 45 1 4.2226 10.7871 4.2157 46 1 5.9636 12.7509 6.2747 47 1 3.8221 4.6365 -0.0002 48 1 5.1474 2.5669 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175396731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:24 Heat of formation + Delta-G solvation = -121.855678 kcal Electronic energy + Delta-G solvation = -28219.240909 eV Core-core repulsion = 23994.845765 eV Total energy + Delta-G solvation = -4224.395144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.98148 -41.60049 -40.51585 -38.44355 -37.90246 -36.82838 -34.80421 -33.22455 -32.21737 -31.70471 -30.86423 -28.80284 -28.34569 -25.98351 -25.16441 -23.73063 -23.53114 -22.16906 -21.96131 -21.54162 -19.78706 -19.11746 -18.55857 -18.02489 -17.56162 -17.29662 -17.18643 -16.68217 -16.26343 -16.15498 -16.02478 -15.68932 -15.45813 -15.33011 -15.26371 -15.18518 -14.58532 -14.19666 -14.07455 -14.05370 -13.85630 -13.39775 -13.21086 -13.01761 -12.89373 -12.84397 -12.70683 -12.44629 -12.37283 -12.27348 -12.18835 -12.10766 -11.87795 -11.78968 -11.47542 -11.37953 -11.09280 -10.94378 -10.23610 -10.03458 -9.41072 -9.00726 -7.96568 -5.25466 -0.50190 0.08859 1.47043 1.47831 1.58134 1.63480 2.00780 2.12734 2.55336 2.58629 3.01554 3.36917 3.52365 3.58265 3.65986 3.85659 3.93709 4.05387 4.08603 4.15859 4.27235 4.29413 4.37649 4.41245 4.43838 4.61407 4.63912 4.67599 4.70401 4.75361 4.79131 4.90063 4.94878 4.97854 5.01115 5.03907 5.06012 5.14346 5.29841 5.35017 5.41865 5.46469 5.47185 5.55668 5.58666 6.10080 6.26801 6.48986 7.14045 7.32452 8.09579 8.32629 9.27190 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.002029 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.945729 B =13799.787739 C =15424.931779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.078 3.922 4 C -0.131 4.131 5 C -0.115 4.115 6 C 0.560 3.440 7 O -0.575 6.575 8 N -0.703 5.703 9 C 0.144 3.856 10 H 0.070 0.930 11 C -0.158 4.158 12 C -0.117 4.117 13 C -0.106 4.106 14 C -0.112 4.112 15 C 0.147 3.853 16 N -0.749 5.749 17 C -0.247 4.247 18 H 0.073 0.927 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.267 1.267 23 H -0.290 1.290 24 H -0.292 1.292 25 C -0.082 4.082 26 C -0.112 4.112 27 C 0.075 3.925 28 F -0.138 7.138 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.063 0.937 32 H 0.150 0.850 33 H 0.414 0.586 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.011 0.989 44 H 0.019 0.981 45 H 0.374 0.626 46 H 0.252 0.748 47 H 0.171 0.829 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.309 -21.016 -20.325 30.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.031 3.969 4 C -0.151 4.151 5 C -0.118 4.118 6 C 0.348 3.652 7 O -0.456 6.456 8 N -0.355 5.355 9 C 0.039 3.961 10 H 0.089 0.911 11 C -0.216 4.216 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.150 4.150 15 C 0.021 3.979 16 N -0.392 5.392 17 C -0.379 4.379 18 H 0.091 0.909 19 C -0.270 4.270 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.192 1.192 23 H -0.217 1.217 24 H -0.219 1.219 25 C -0.101 4.101 26 C -0.131 4.131 27 C 0.055 3.945 28 F -0.116 7.116 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.167 0.833 33 H 0.252 0.748 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.029 0.971 44 H 0.037 0.963 45 H 0.206 0.794 46 H 0.061 0.939 47 H 0.189 0.811 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.072 -21.357 -20.152 30.733 hybrid contribution 0.575 0.251 0.981 1.164 sum -8.497 -21.105 -19.171 29.752 Atomic orbital electron populations 1.23427 0.75790 1.06097 1.02420 1.86124 1.23909 1.25385 1.88763 1.18996 0.91080 0.85933 1.00848 1.21249 1.01335 0.90119 1.02391 1.19825 0.94435 0.92598 1.04993 1.18287 0.87016 0.84157 0.75766 1.90761 1.15246 1.87840 1.51737 1.45958 1.11258 1.04766 1.73510 1.21027 0.94613 0.83068 0.97348 0.91130 1.22124 1.02303 1.01811 0.95374 1.21857 1.01257 0.97731 0.94621 1.21445 0.99482 0.97819 0.95718 1.21600 1.00353 0.99131 0.93922 1.20871 0.92957 0.90464 0.93631 1.42640 1.63848 1.23371 1.09316 1.19680 1.26138 1.03664 0.88455 0.90919 1.25601 1.01868 0.96974 1.02526 1.69811 1.44162 1.11054 1.36937 0.85058 0.77330 0.77458 0.79825 1.19190 1.21740 1.21910 1.21415 0.91325 0.99969 0.97362 1.21295 1.02880 0.88772 1.00120 1.17590 0.86108 0.83604 1.07236 1.91498 1.76678 1.49439 1.94015 0.91516 0.85585 0.91838 0.83255 0.74768 0.90453 0.90938 0.93812 0.89424 0.89431 0.92710 0.91384 0.91643 0.92503 0.97079 0.96318 0.79381 0.93907 0.81139 0.80461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.21 10.36 -93.16 -0.96 -7.17 16 3 C 0.08 1.48 6.69 22.49 0.15 1.63 16 4 C -0.13 -2.40 8.58 22.62 0.19 -2.21 16 5 C -0.12 -1.96 5.87 -20.10 -0.12 -2.07 16 6 C 0.56 11.23 7.73 86.75 0.67 11.90 16 7 O -0.57 -15.83 16.00 -3.94 -0.06 -15.90 16 8 N -0.70 -10.42 4.48 -445.53 -2.00 -12.41 16 9 C 0.14 2.30 2.57 44.99 0.12 2.41 16 10 H 0.07 1.46 7.58 -2.39 -0.02 1.45 16 11 C -0.16 -2.22 9.48 71.98 0.68 -1.54 16 12 C -0.12 -1.76 4.75 30.59 0.15 -1.62 16 13 C -0.11 -2.24 5.10 30.59 0.16 -2.09 16 14 C -0.11 -3.25 5.33 30.59 0.16 -3.09 16 15 C 0.15 5.83 6.26 86.38 0.54 6.37 16 16 N -0.75 -38.62 5.60 -343.47 -1.92 -40.55 16 17 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 18 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 19 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 20 N -0.97 -59.46 13.06 21.65 0.28 -59.18 16 21 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 25 C -0.08 -0.95 9.53 22.53 0.21 -0.74 16 26 C -0.11 -1.39 10.00 22.26 0.22 -1.17 16 27 C 0.07 1.35 7.31 22.54 0.16 1.52 16 28 F -0.14 -2.86 17.10 44.97 0.77 -2.09 16 29 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 30 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.68 7.66 -2.38 -0.02 0.66 16 32 H 0.15 2.70 5.88 -2.91 -0.02 2.68 16 33 H 0.41 3.83 6.63 -92.71 -0.61 3.22 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.34 7.75 -2.38 -0.02 1.32 16 41 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.37 20.27 7.67 -92.70 -0.71 19.55 16 46 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 47 H 0.17 0.86 6.39 -2.91 -0.02 0.84 16 48 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -75.33 402.98 3.51 -71.82 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.34 Total: 23.77 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 5.72 Total: -6.66 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -3.64 Total: -112.14 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -1.03 Total: -23.07 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.77 Total: -2.09 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.33 3.51 -71.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175396731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.035 kcal (2) G-P(sol) polarization free energy of solvation -75.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds