Wall clock time and date at job start Tue Mar 31 2020 22:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35962 * 117.00099 * 2 1 4 4 C 1.38316 * 119.99169 * 359.97438 * 3 2 1 5 5 C 1.39609 * 119.82475 * 179.97438 * 4 3 2 6 6 C 1.47730 * 120.09970 * 179.97438 * 5 4 3 7 7 O 1.21567 * 120.00412 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99935 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00231 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46643 * 324.99984 * 9 8 6 11 11 C 1.53002 * 109.47013 * 84.99743 * 9 8 6 12 12 C 1.52996 * 109.47049 * 204.99988 * 9 8 6 13 13 C 1.52997 * 109.47131 * 65.00110 * 12 9 8 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 9 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47294 * 179.97438 * 15 14 13 17 17 C 1.36935 * 120.00627 * 179.97438 * 16 15 14 18 18 H 1.08012 * 119.99691 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00809 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99595 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00541 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47144 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47272 * 119.99947 * 21 19 17 24 24 H 1.48504 * 109.47033 * 240.00010 * 21 19 17 25 25 C 1.39651 * 119.80286 * 0.25586 * 5 4 3 26 26 C 1.37898 * 119.98003 * 359.51110 * 25 5 4 27 27 C 1.38535 * 120.17736 * 0.47048 * 26 25 5 28 28 F 1.35097 * 119.89941 * 179.76842 * 27 26 25 29 29 H 1.08997 * 109.46837 * 300.00416 * 1 2 3 30 30 H 1.09008 * 109.46535 * 60.00423 * 1 2 3 31 31 H 1.08997 * 109.47041 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.09186 * 0.02562 * 4 3 2 33 33 H 0.97003 * 120.00102 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.46646 * 179.97438 * 11 9 8 35 35 H 1.08992 * 109.47133 * 300.00613 * 11 9 8 36 36 H 1.09001 * 109.46843 * 60.00279 * 11 9 8 37 37 H 1.08996 * 109.47452 * 305.00111 * 12 9 8 38 38 H 1.09001 * 109.46997 * 184.99684 * 12 9 8 39 39 H 1.09001 * 109.47502 * 60.00153 * 13 12 9 40 40 H 1.09001 * 109.47289 * 299.99950 * 13 12 9 41 41 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 42 42 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 43 43 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 44 44 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 45 45 H 0.97006 * 119.99755 * 359.97438 * 16 15 14 46 46 H 0.97000 * 120.00324 * 180.02562 * 20 19 17 47 47 H 1.07997 * 120.01337 * 179.74359 * 25 5 4 48 48 H 1.07991 * 119.90922 * 180.21059 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2929 2.3713 -0.0005 5 6 1.9303 3.6134 0.0000 6 6 1.1315 4.8561 -0.0011 7 8 -0.0828 4.7982 -0.0021 8 7 1.7490 6.0541 -0.0011 9 6 0.9570 7.2866 -0.0017 10 1 0.0526 7.1369 -0.5915 11 6 0.5748 7.6478 1.4351 12 6 1.7812 8.4223 -0.6112 13 6 2.0574 8.1179 -2.0850 14 6 2.8812 9.2540 -2.6947 15 6 3.1568 8.9500 -4.1686 16 7 3.9450 10.0381 -4.7526 17 6 4.3148 9.9851 -6.0699 18 1 4.0258 9.1408 -6.6785 19 6 5.0621 11.0157 -6.6232 20 7 5.4148 12.0443 -5.8815 21 14 5.5660 10.9437 -8.4204 22 1 5.0478 9.6927 -9.0301 23 1 5.0040 12.1151 -9.1394 24 1 7.0475 10.9657 -8.5204 25 6 3.3254 3.6776 -0.0043 26 6 4.0686 2.5161 0.0011 27 6 3.4353 1.2840 0.0010 28 9 4.1690 0.1496 0.0015 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2142 2.3164 -0.0005 33 1 2.7180 6.1004 0.0000 34 1 -0.0141 8.5650 1.4347 35 1 -0.0123 6.8387 1.8693 36 1 1.4792 7.7975 2.0249 37 1 2.7262 8.5133 -0.0758 38 1 1.2267 9.3572 -0.5310 39 1 1.1124 8.0270 -2.6205 40 1 2.6119 7.1830 -2.1652 41 1 2.3262 10.1888 -2.6145 42 1 3.8261 9.3454 -2.1593 43 1 3.7115 8.0152 -4.2492 44 1 2.2115 8.8589 -4.7037 45 1 4.2049 10.7961 -4.2060 46 1 5.9368 12.7648 -6.2681 47 1 3.8220 4.6366 -0.0081 48 1 5.1473 2.5671 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175396733.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:29 Heat of formation + Delta-G solvation = -99.779289 kcal Electronic energy + Delta-G solvation = -28218.112867 eV Core-core repulsion = 23994.675028 eV Total energy + Delta-G solvation = -4223.437840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.24733 -40.90013 -39.80665 -37.76695 -36.94758 -35.30759 -33.36297 -32.08144 -31.20231 -30.67342 -30.03795 -27.82546 -27.47839 -24.69224 -24.03687 -23.02900 -22.24309 -21.25604 -20.82511 -20.66802 -19.11097 -17.86066 -17.34129 -17.04510 -16.86708 -16.64327 -16.41771 -15.50043 -15.28188 -15.10051 -15.04001 -14.76627 -14.72995 -14.44195 -14.00799 -13.60213 -13.40305 -13.30190 -13.14818 -13.03949 -12.97391 -12.68177 -12.41112 -12.18989 -11.82381 -11.75058 -11.65331 -11.49095 -11.29795 -11.02570 -10.83015 -10.73450 -10.42898 -10.34262 -10.25503 -9.97247 -9.68037 -9.51674 -9.32319 -8.86484 -8.75830 -6.90446 -5.75773 -3.04135 0.18552 0.69590 2.36735 2.59610 2.80198 3.27344 3.43697 3.49279 3.51653 3.66988 4.14610 4.22668 4.43542 4.49683 4.51590 4.63739 4.71175 4.72214 4.84138 4.93410 4.96617 5.05952 5.21126 5.28784 5.35123 5.38943 5.40837 5.52272 5.55127 5.59404 5.64109 5.68061 5.75339 5.85483 5.91837 6.00683 6.06496 6.16773 6.28438 6.32114 6.37231 6.45072 6.70823 6.88729 6.92561 7.17852 7.71365 7.87398 8.43682 9.54471 10.13606 10.48078 11.47379 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011041 B = 0.002028 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.458678 B =13802.963032 C =15425.359044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.088 3.912 4 C -0.124 4.124 5 C -0.105 4.105 6 C 0.561 3.439 7 O -0.536 6.536 8 N -0.714 5.714 9 C 0.140 3.860 10 H 0.091 0.909 11 C -0.163 4.163 12 C -0.127 4.127 13 C -0.115 4.115 14 C -0.126 4.126 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.017 4.017 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.092 4.092 26 C -0.121 4.121 27 C 0.094 3.906 28 F -0.127 7.127 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.152 0.848 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.141 0.859 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 -20.897 19.883 30.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.042 3.958 4 C -0.144 4.144 5 C -0.108 4.108 6 C 0.348 3.652 7 O -0.414 6.414 8 N -0.366 5.366 9 C 0.037 3.963 10 H 0.109 0.891 11 C -0.222 4.222 12 C -0.165 4.165 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.025 3.975 16 N -0.379 5.379 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.213 4.213 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.111 4.111 26 C -0.139 4.139 27 C 0.074 3.926 28 F -0.105 7.105 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.170 0.830 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.159 0.841 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.716 -21.211 19.702 30.536 hybrid contribution 0.843 0.239 -0.868 1.234 sum -8.873 -20.972 18.834 29.551 Atomic orbital electron populations 1.23200 0.77356 1.04574 1.02030 1.86154 1.22169 1.25159 1.88673 1.18864 0.90753 0.85781 1.00437 1.21231 1.01297 0.89903 1.01960 1.19810 0.93537 0.93394 1.04073 1.18069 0.87406 0.83357 0.76380 1.90779 1.13549 1.87303 1.49749 1.46033 1.10577 1.05425 1.74564 1.21108 0.95289 0.83026 0.96923 0.89097 1.22179 1.01774 1.02024 0.96185 1.21951 1.00321 0.97659 0.96606 1.21533 1.00564 0.99035 0.94174 1.21726 0.99577 0.97945 0.97092 1.20650 0.94227 0.91941 0.90730 1.42397 1.63458 1.22255 1.09797 1.19298 1.26825 1.03746 0.87003 0.91184 1.24755 1.01235 0.97060 0.98206 1.69673 1.43241 1.10311 1.35135 0.86107 0.77966 0.77208 0.84880 1.20559 1.21855 1.21860 1.21120 0.92302 0.98708 0.98992 1.20989 1.01578 0.89741 1.01633 1.17224 0.85985 0.83126 1.06298 1.91531 1.76510 1.48701 1.93801 0.92112 0.92010 0.87633 0.83026 0.76312 0.91346 0.92243 0.92390 0.91252 0.90015 0.91926 0.92133 0.92027 0.92104 0.96619 0.96584 0.78353 0.93598 0.84129 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.87 10.36 -19.62 -0.20 -3.07 16 3 C 0.09 0.84 6.69 -39.24 -0.26 0.57 16 4 C -0.12 -1.14 8.58 -39.04 -0.33 -1.47 16 5 C -0.10 -0.95 5.87 -104.98 -0.62 -1.56 16 6 C 0.56 5.88 7.73 -12.38 -0.10 5.79 16 7 O -0.54 -7.32 16.00 5.31 0.08 -7.24 16 8 N -0.71 -6.04 4.48 -54.79 -0.25 -6.29 16 9 C 0.14 1.26 2.57 -67.93 -0.17 1.08 16 10 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 11 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 12 C -0.13 -1.14 4.75 -26.73 -0.13 -1.27 16 13 C -0.11 -1.34 5.10 -26.73 -0.14 -1.47 16 14 C -0.13 -1.93 5.33 -26.73 -0.14 -2.07 16 15 C 0.15 3.09 6.26 -4.05 -0.03 3.06 16 16 N -0.74 -19.04 5.60 -59.91 -0.34 -19.38 16 17 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 18 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 19 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 20 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 21 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 C -0.09 -0.65 9.53 -39.18 -0.37 -1.02 16 26 C -0.12 -0.88 10.00 -39.60 -0.40 -1.27 16 27 C 0.09 0.88 7.31 -39.16 -0.29 0.59 16 28 F -0.13 -1.33 17.10 2.25 0.04 -1.30 16 29 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.06 0.32 7.66 -51.92 -0.40 -0.08 16 31 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.15 1.31 5.88 -52.48 -0.31 1.00 16 33 H 0.40 2.52 6.63 -40.82 -0.27 2.25 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.14 0.63 6.39 -52.49 -0.34 0.30 16 48 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 402.98 15.07 6.07 6.07 Total: -1.00 -34.75 402.98 -8.20 -42.95 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.44 Total: 4.89 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.87 Total: -6.42 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.14 Total: -53.52 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.12 Total: -10.31 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.75 -8.20 -42.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175396733.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.831 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds