Wall clock time and date at job start Tue Mar 31 2020 22:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35962 * 117.00099 * 2 1 4 4 C 1.38316 * 119.99169 * 359.97438 * 3 2 1 5 5 C 1.39609 * 119.82475 * 179.97438 * 4 3 2 6 6 C 1.47730 * 120.09970 * 179.97438 * 5 4 3 7 7 O 1.21567 * 120.00412 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99935 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00231 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.46643 * 324.99984 * 9 8 6 11 11 C 1.53002 * 109.47013 * 84.99743 * 9 8 6 12 12 C 1.52996 * 109.47049 * 204.99988 * 9 8 6 13 13 C 1.52997 * 109.47131 * 65.00110 * 12 9 8 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 9 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47294 * 179.97438 * 15 14 13 17 17 C 1.36935 * 120.00627 * 179.97438 * 16 15 14 18 18 H 1.08012 * 119.99691 * 359.97438 * 17 16 15 19 19 C 1.38805 * 120.00809 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99595 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00541 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47144 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47272 * 119.99947 * 21 19 17 24 24 H 1.48504 * 109.47033 * 240.00010 * 21 19 17 25 25 C 1.39651 * 119.80286 * 0.25586 * 5 4 3 26 26 C 1.37898 * 119.98003 * 359.51110 * 25 5 4 27 27 C 1.38535 * 120.17736 * 0.47048 * 26 25 5 28 28 F 1.35097 * 119.89941 * 179.76842 * 27 26 25 29 29 H 1.08997 * 109.46837 * 300.00416 * 1 2 3 30 30 H 1.09008 * 109.46535 * 60.00423 * 1 2 3 31 31 H 1.08997 * 109.47041 * 179.97438 * 1 2 3 32 32 H 1.08007 * 120.09186 * 0.02562 * 4 3 2 33 33 H 0.97003 * 120.00102 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.46646 * 179.97438 * 11 9 8 35 35 H 1.08992 * 109.47133 * 300.00613 * 11 9 8 36 36 H 1.09001 * 109.46843 * 60.00279 * 11 9 8 37 37 H 1.08996 * 109.47452 * 305.00111 * 12 9 8 38 38 H 1.09001 * 109.46997 * 184.99684 * 12 9 8 39 39 H 1.09001 * 109.47502 * 60.00153 * 13 12 9 40 40 H 1.09001 * 109.47289 * 299.99950 * 13 12 9 41 41 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 42 42 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 43 43 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 44 44 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 45 45 H 0.97006 * 119.99755 * 359.97438 * 16 15 14 46 46 H 0.97000 * 120.00324 * 180.02562 * 20 19 17 47 47 H 1.07997 * 120.01337 * 179.74359 * 25 5 4 48 48 H 1.07991 * 119.90922 * 180.21059 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2929 2.3713 -0.0005 5 6 1.9303 3.6134 0.0000 6 6 1.1315 4.8561 -0.0011 7 8 -0.0828 4.7982 -0.0021 8 7 1.7490 6.0541 -0.0011 9 6 0.9570 7.2866 -0.0017 10 1 0.0526 7.1369 -0.5915 11 6 0.5748 7.6478 1.4351 12 6 1.7812 8.4223 -0.6112 13 6 2.0574 8.1179 -2.0850 14 6 2.8812 9.2540 -2.6947 15 6 3.1568 8.9500 -4.1686 16 7 3.9450 10.0381 -4.7526 17 6 4.3148 9.9851 -6.0699 18 1 4.0258 9.1408 -6.6785 19 6 5.0621 11.0157 -6.6232 20 7 5.4148 12.0443 -5.8815 21 14 5.5660 10.9437 -8.4204 22 1 5.0478 9.6927 -9.0301 23 1 5.0040 12.1151 -9.1394 24 1 7.0475 10.9657 -8.5204 25 6 3.3254 3.6776 -0.0043 26 6 4.0686 2.5161 0.0011 27 6 3.4353 1.2840 0.0010 28 9 4.1690 0.1496 0.0015 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2142 2.3164 -0.0005 33 1 2.7180 6.1004 0.0000 34 1 -0.0141 8.5650 1.4347 35 1 -0.0123 6.8387 1.8693 36 1 1.4792 7.7975 2.0249 37 1 2.7262 8.5133 -0.0758 38 1 1.2267 9.3572 -0.5310 39 1 1.1124 8.0270 -2.6205 40 1 2.6119 7.1830 -2.1652 41 1 2.3262 10.1888 -2.6145 42 1 3.8261 9.3454 -2.1593 43 1 3.7115 8.0152 -4.2492 44 1 2.2115 8.8589 -4.7037 45 1 4.2049 10.7961 -4.2060 46 1 5.9368 12.7648 -6.2681 47 1 3.8220 4.6366 -0.0081 48 1 5.1473 2.5671 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175396733.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:28 Heat of formation + Delta-G solvation = -121.855137 kcal Electronic energy + Delta-G solvation = -28219.070148 eV Core-core repulsion = 23994.675028 eV Total energy + Delta-G solvation = -4224.395120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.98186 -41.60039 -40.51587 -38.44305 -37.90262 -36.82833 -34.80388 -33.22409 -32.21677 -31.70420 -30.86400 -28.80286 -28.34540 -25.98350 -25.16425 -23.73063 -23.53098 -22.16893 -21.96170 -21.54178 -19.78700 -19.11717 -18.55859 -18.02470 -17.56168 -17.29653 -17.18651 -16.68203 -16.26352 -16.15488 -16.02554 -15.68810 -15.45795 -15.32957 -15.26374 -15.18585 -14.58516 -14.19587 -14.07399 -14.05505 -13.85582 -13.39783 -13.21119 -13.01725 -12.89371 -12.84427 -12.70689 -12.44601 -12.37273 -12.27385 -12.18797 -12.10744 -11.87775 -11.79006 -11.47595 -11.37949 -11.09283 -10.94362 -10.23589 -10.03460 -9.41049 -9.00692 -7.96573 -5.25491 -0.50179 0.08865 1.47044 1.47844 1.58148 1.63491 2.00788 2.12735 2.55348 2.58629 3.01564 3.36918 3.52373 3.58269 3.65977 3.85643 3.93740 4.05379 4.08637 4.15842 4.27237 4.29412 4.37648 4.41237 4.43822 4.61407 4.63899 4.67599 4.70391 4.75355 4.79149 4.90068 4.94837 4.97849 5.01125 5.03918 5.06015 5.14349 5.29848 5.35022 5.41863 5.46465 5.47116 5.55668 5.58659 6.10082 6.26833 6.49014 7.14053 7.32446 8.09552 8.32602 9.27182 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011041 B = 0.002028 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.458678 B =13802.963032 C =15425.359044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.078 3.922 4 C -0.131 4.131 5 C -0.115 4.115 6 C 0.560 3.440 7 O -0.575 6.575 8 N -0.703 5.703 9 C 0.143 3.857 10 H 0.071 0.929 11 C -0.158 4.158 12 C -0.117 4.117 13 C -0.106 4.106 14 C -0.112 4.112 15 C 0.147 3.853 16 N -0.749 5.749 17 C -0.247 4.247 18 H 0.073 0.927 19 C -0.078 4.078 20 N -0.969 5.969 21 Si 0.975 3.025 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.290 1.290 25 C -0.082 4.082 26 C -0.112 4.112 27 C 0.075 3.925 28 F -0.138 7.138 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.126 0.874 32 H 0.150 0.850 33 H 0.414 0.586 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.019 0.981 44 H 0.011 0.989 45 H 0.374 0.626 46 H 0.252 0.748 47 H 0.171 0.829 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.228 -21.063 20.301 30.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.031 3.969 4 C -0.151 4.151 5 C -0.119 4.119 6 C 0.348 3.652 7 O -0.456 6.456 8 N -0.355 5.355 9 C 0.039 3.961 10 H 0.089 0.911 11 C -0.216 4.216 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.150 4.150 15 C 0.021 3.979 16 N -0.392 5.392 17 C -0.379 4.379 18 H 0.091 0.909 19 C -0.270 4.270 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.217 1.217 25 C -0.101 4.101 26 C -0.131 4.131 27 C 0.055 3.945 28 F -0.116 7.116 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.167 0.833 33 H 0.252 0.748 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.037 0.963 44 H 0.029 0.971 45 H 0.206 0.794 46 H 0.061 0.939 47 H 0.189 0.811 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.993 -21.403 20.131 30.728 hybrid contribution 0.573 0.254 -0.981 1.164 sum -8.420 -21.149 19.150 29.747 Atomic orbital electron populations 1.23430 0.75788 1.06096 1.02420 1.86124 1.23910 1.25384 1.88762 1.18994 0.91081 0.85933 1.00850 1.21250 1.01337 0.90120 1.02388 1.19825 0.94433 0.92597 1.04996 1.18286 0.87015 0.84157 0.75766 1.90760 1.15247 1.87836 1.51737 1.45960 1.11257 1.04767 1.73513 1.21029 0.94628 0.83066 0.97335 0.91127 1.22123 1.02328 1.01811 0.95351 1.21855 1.01282 0.97725 0.94602 1.21446 0.99510 0.97807 0.95700 1.21600 1.00377 0.99128 0.93902 1.20873 0.92995 0.90437 0.93619 1.42641 1.64033 1.23339 1.09164 1.19680 1.26249 1.03628 0.88361 0.90920 1.25602 1.01880 0.96972 1.02529 1.69818 1.44250 1.11008 1.36896 0.85056 0.77320 0.77456 0.79826 1.19188 1.21914 1.21742 1.21417 0.91326 0.99969 0.97360 1.21296 1.02878 0.88770 1.00123 1.17590 0.86107 0.83606 1.07237 1.91498 1.76674 1.49443 1.94015 0.91519 0.91832 0.85584 0.83255 0.74768 0.90451 0.93805 0.90947 0.89425 0.89432 0.92714 0.91375 0.92501 0.91647 0.96315 0.97074 0.79382 0.93914 0.81142 0.80461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.21 10.36 -93.12 -0.96 -7.17 16 3 C 0.08 1.48 6.69 22.49 0.15 1.63 16 4 C -0.13 -2.41 8.58 22.62 0.19 -2.21 16 5 C -0.12 -1.96 5.87 -20.10 -0.12 -2.07 16 6 C 0.56 11.23 7.73 86.75 0.67 11.90 16 7 O -0.57 -15.83 16.00 -3.93 -0.06 -15.89 16 8 N -0.70 -10.42 4.48 -445.51 -2.00 -12.41 16 9 C 0.14 2.30 2.57 44.99 0.12 2.41 16 10 H 0.07 1.46 7.58 -2.39 -0.02 1.45 16 11 C -0.16 -2.22 9.48 71.98 0.68 -1.54 16 12 C -0.12 -1.76 4.75 30.59 0.15 -1.62 16 13 C -0.11 -2.24 5.10 30.60 0.16 -2.09 16 14 C -0.11 -3.25 5.33 30.60 0.16 -3.09 16 15 C 0.15 5.83 6.26 86.38 0.54 6.37 16 16 N -0.75 -38.62 5.60 -343.46 -1.92 -40.55 16 17 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 18 H 0.07 4.00 7.83 -2.90 -0.02 3.98 16 19 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 20 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16 21 Si 0.97 46.35 29.55 68.60 2.03 48.37 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 C -0.08 -0.95 9.53 22.53 0.21 -0.74 16 26 C -0.11 -1.39 10.00 22.26 0.22 -1.17 16 27 C 0.07 1.35 7.31 22.54 0.16 1.52 16 28 F -0.14 -2.86 17.10 44.97 0.77 -2.09 16 29 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 30 H 0.06 0.68 7.66 -2.38 -0.02 0.66 16 31 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.15 2.70 5.88 -2.91 -0.02 2.68 16 33 H 0.41 3.83 6.63 -92.71 -0.61 3.22 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.34 7.75 -2.39 -0.02 1.32 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 45 H 0.37 20.26 7.67 -92.70 -0.71 19.55 16 46 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 47 H 0.17 0.86 6.39 -2.91 -0.02 0.84 16 48 H 0.18 1.22 8.06 -2.92 -0.02 1.19 16 Total: -1.00 -75.33 402.98 3.51 -71.82 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.34 Total: 23.77 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 5.72 Total: -6.66 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -3.64 Total: -112.15 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -1.03 Total: -23.06 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.77 Total: -2.09 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.33 3.51 -71.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175396733.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.035 kcal (2) G-P(sol) polarization free energy of solvation -75.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds