Wall clock time and date at job start Tue Mar 31 2020 22:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 C 1.52998 * 109.47160 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47446 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47261 * 180.02562 * 7 6 5 9 9 C 1.36937 * 119.99584 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00671 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99745 * 179.97438 * 9 8 7 12 12 N 1.31629 * 119.99786 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99993 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47287 * 59.99996 * 13 11 9 15 15 H 1.48506 * 109.46723 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47079 * 299.99613 * 13 11 9 17 17 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 18 18 C 1.34777 * 119.99525 * 84.99977 * 17 2 1 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 2 21 21 O 1.42899 * 109.47143 * 180.27800 * 20 18 17 22 22 C 1.35942 * 117.00266 * 179.97438 * 21 20 18 23 23 C 1.38711 * 120.03048 * 359.72890 * 22 21 20 24 24 C 1.38152 * 119.97086 * 179.79157 * 23 22 21 25 25 C 1.38446 * 120.03056 * 0.47761 * 24 23 22 26 26 F 1.35105 * 119.97227 * 179.72473 * 25 24 23 27 27 C 1.38462 * 120.06186 * 359.75085 * 25 24 23 28 28 C 1.38151 * 120.02822 * 0.02562 * 27 25 24 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 32 32 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 33 33 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 34 34 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 35 35 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 36 36 H 1.09000 * 109.47070 * 300.00153 * 6 5 4 37 37 H 1.09006 * 109.46982 * 59.99957 * 6 5 4 38 38 H 1.09000 * 109.47031 * 300.00080 * 7 6 5 39 39 H 1.09006 * 109.47145 * 59.99959 * 7 6 5 40 40 H 0.97001 * 119.99746 * 359.97438 * 8 7 6 41 41 H 0.96996 * 119.99701 * 180.02562 * 12 11 9 42 42 H 0.97000 * 120.00580 * 265.00723 * 17 2 1 43 43 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 44 44 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 45 45 H 1.08001 * 120.01529 * 359.97438 * 23 22 21 46 46 H 1.07999 * 119.98419 * 180.20967 * 24 23 22 47 47 H 1.07995 * 119.98360 * 180.02562 * 27 25 24 48 48 H 1.08000 * 120.01396 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3348 2.5628 7 6 5.5995 -1.2264 2.6277 8 7 6.0879 -1.9179 3.8234 9 6 7.4299 -1.9535 4.0935 10 1 8.1283 -1.4715 3.4254 11 6 7.8927 -2.6083 5.2267 12 7 7.0414 -3.1945 6.0417 13 14 9.7232 -2.6563 5.5955 14 1 10.2339 -1.2703 5.7484 15 1 9.9550 -3.4114 6.8531 16 1 10.4359 -3.3260 4.4781 17 7 2.0185 -0.6908 -1.1960 18 6 2.1472 -0.0185 -2.3570 19 8 1.8591 1.1584 -2.4116 20 6 2.6554 -0.7275 -3.5859 21 8 2.7084 0.1918 -4.6786 22 6 3.1492 -0.2909 -5.8705 23 6 3.5280 -1.6204 -5.9837 24 6 3.9717 -2.1108 -7.1967 25 6 4.0478 -1.2734 -8.2965 26 9 4.4871 -1.7528 -9.4808 27 6 3.6744 0.0552 -8.1839 28 6 3.2260 0.5470 -6.9733 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 1.6053 -0.2615 2.1370 33 1 1.7516 -1.7714 1.2059 34 1 3.9995 -1.0728 0.4262 35 1 3.8531 0.4371 1.3574 36 1 3.6402 -0.8756 3.4507 37 1 3.7864 -2.3851 2.5188 38 1 6.0345 -1.6853 1.7398 39 1 5.8876 -0.1760 2.6719 40 1 5.4606 -2.3499 4.4240 41 1 7.3647 -3.6517 6.8337 42 1 2.2491 -1.6319 -1.1524 43 1 3.6539 -1.1197 -3.3923 44 1 1.9842 -1.5494 -3.8349 45 1 3.4734 -2.2728 -5.1247 46 1 4.2635 -3.1468 -7.2859 47 1 3.7338 0.7072 -9.0427 48 1 2.9353 1.5835 -6.8855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176529706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:37 Heat of formation + Delta-G solvation = -99.948245 kcal Electronic energy + Delta-G solvation = -27482.471307 eV Core-core repulsion = 23259.026141 eV Total energy + Delta-G solvation = -4223.445166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.21972 -40.87930 -39.85526 -37.72621 -36.88531 -35.30247 -33.36253 -32.03516 -31.69014 -30.54546 -30.06132 -28.23934 -27.49621 -24.31870 -23.72991 -22.86590 -22.22085 -21.18866 -20.85471 -20.69534 -18.96488 -17.83910 -17.76783 -17.02774 -16.87478 -16.74215 -16.35692 -15.92273 -15.26121 -15.07243 -14.93599 -14.76583 -14.54291 -14.15201 -14.00056 -13.70625 -13.59654 -13.46776 -13.18579 -13.08442 -13.00159 -12.76677 -12.68998 -12.43224 -11.82467 -11.54603 -11.42888 -11.40654 -11.30324 -11.04325 -10.81270 -10.75361 -10.47165 -10.35187 -10.15031 -10.02954 -9.70564 -9.68453 -9.38710 -8.86678 -8.59997 -6.91854 -5.76608 -3.05141 0.64145 0.72201 2.09795 2.21933 3.06916 3.21502 3.43814 3.47873 3.49170 3.84814 4.08174 4.24001 4.27923 4.43152 4.48460 4.53526 4.62784 4.63060 4.80256 4.82372 4.90781 5.05079 5.18948 5.32876 5.36034 5.38626 5.51002 5.56327 5.60652 5.63259 5.66018 5.69299 5.72469 5.82333 5.89532 6.03955 6.11661 6.17407 6.26070 6.28887 6.35450 6.42856 6.76436 6.86645 6.90604 7.11827 7.69241 7.83776 8.42783 9.53433 10.12429 10.46961 11.46334 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.001767 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.194551 B =15838.407905 C =18194.812236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.718 5.718 18 C 0.517 3.483 19 O -0.517 6.517 20 C 0.037 3.963 21 O -0.285 6.285 22 C 0.122 3.878 23 C -0.183 4.183 24 C -0.111 4.111 25 C 0.058 3.942 26 F -0.141 7.141 27 C -0.112 4.112 28 C -0.119 4.119 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.402 0.598 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.143 0.857 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.037 3.306 -26.598 30.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.372 5.372 18 C 0.301 3.699 19 O -0.391 6.391 20 C -0.041 4.041 21 O -0.197 6.197 22 C 0.076 3.924 23 C -0.201 4.201 24 C -0.130 4.130 25 C 0.039 3.961 26 F -0.120 7.120 27 C -0.131 4.131 28 C -0.138 4.138 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.237 0.763 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.157 0.843 46 H 0.157 0.843 47 H 0.161 0.839 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.117 4.383 -26.623 30.928 hybrid contribution 1.117 -1.109 0.346 1.611 sum -14.000 3.275 -26.277 29.954 Atomic orbital electron populations 1.22186 0.95181 1.02191 1.02675 1.21097 0.93848 0.97791 0.83369 0.89119 1.21953 0.96930 1.00985 0.96630 1.21530 0.93884 1.01191 0.98661 1.21727 0.97285 1.00250 0.97102 1.20649 0.90978 0.95340 0.90578 1.42377 1.05328 1.64913 1.25251 1.19209 0.83933 1.28445 1.05547 0.91285 1.24756 0.97755 1.00945 0.97689 1.69655 1.32862 1.40701 1.15130 0.86249 0.85072 0.77492 0.77275 1.21256 1.21658 1.21282 1.45947 1.67670 1.14256 1.09293 1.19927 0.78465 0.87471 0.84029 1.90765 1.48434 1.15448 1.84481 1.22555 1.03284 0.92527 0.85761 1.86182 1.80581 1.37056 1.15927 1.19069 0.95131 0.92311 0.85847 1.21156 1.05161 0.94840 0.98988 1.20961 1.00088 1.00472 0.91444 1.17607 1.03534 0.93076 0.81925 1.91503 1.87415 1.88589 1.44492 1.20990 0.99563 0.94019 0.98493 1.20318 1.02974 1.00674 0.89833 0.92384 0.91307 0.92224 0.89995 0.91226 0.92189 0.91908 0.92011 0.92112 0.96678 0.96573 0.78348 0.93491 0.76310 0.88494 0.88766 0.84274 0.84259 0.83896 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.48 37.16 0.35 -0.93 16 2 C 0.14 1.23 2.57 -67.93 -0.17 1.05 16 3 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 4 C -0.13 -1.10 4.75 -26.73 -0.13 -1.22 16 5 C -0.11 -1.29 5.10 -26.73 -0.14 -1.43 16 6 C -0.13 -1.90 5.33 -26.74 -0.14 -2.04 16 7 C 0.15 3.05 6.26 -4.04 -0.03 3.03 16 8 N -0.73 -18.92 5.60 -59.90 -0.34 -19.25 16 9 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 11 C -0.02 -0.46 5.50 -17.42 -0.10 -0.55 16 12 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 13 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 N -0.72 -5.39 4.53 -53.80 -0.24 -5.63 16 18 C 0.52 4.98 7.87 -10.98 -0.09 4.89 16 19 O -0.52 -7.36 16.16 -14.36 -0.23 -7.59 16 20 C 0.04 0.25 5.22 36.01 0.19 0.44 16 21 O -0.29 -2.77 9.67 -39.47 -0.38 -3.16 16 22 C 0.12 1.01 6.69 -39.23 -0.26 0.75 16 23 C -0.18 -1.20 9.04 -39.44 -0.36 -1.56 16 24 C -0.11 -0.75 10.02 -39.54 -0.40 -1.15 16 25 C 0.06 0.46 7.30 -39.42 -0.29 0.17 16 26 F -0.14 -1.25 17.27 2.25 0.04 -1.21 16 27 C -0.11 -0.78 10.02 -39.53 -0.40 -1.18 16 28 C -0.12 -0.91 9.99 -39.44 -0.39 -1.30 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.40 1.97 8.60 -40.82 -0.35 1.62 16 43 H 0.10 0.46 7.65 -51.92 -0.40 0.07 16 44 H 0.09 0.37 7.67 -51.93 -0.40 -0.03 16 45 H 0.14 0.58 6.30 -52.49 -0.33 0.24 16 46 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 47 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 407.25 15.07 6.14 6.14 Total: -1.00 -35.33 407.25 -9.44 -44.76 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.63 Total: 4.16 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.49 Total: -8.02 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.15 Total: -52.60 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.61 Total: -10.75 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.33 -9.44 -44.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176529706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.183 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds