Wall clock time and date at job start Tue Mar 31 2020 22:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 C 1.52998 * 109.47160 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47446 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47261 * 180.02562 * 7 6 5 9 9 C 1.36937 * 119.99584 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00671 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99745 * 179.97438 * 9 8 7 12 12 N 1.31629 * 119.99786 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99993 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47287 * 59.99996 * 13 11 9 15 15 H 1.48506 * 109.46723 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47079 * 299.99613 * 13 11 9 17 17 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 18 18 C 1.34777 * 119.99525 * 84.99977 * 17 2 1 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 2 21 21 O 1.42899 * 109.47143 * 180.27800 * 20 18 17 22 22 C 1.35942 * 117.00266 * 179.97438 * 21 20 18 23 23 C 1.38711 * 120.03048 * 359.72890 * 22 21 20 24 24 C 1.38152 * 119.97086 * 179.79157 * 23 22 21 25 25 C 1.38446 * 120.03056 * 0.47761 * 24 23 22 26 26 F 1.35105 * 119.97227 * 179.72473 * 25 24 23 27 27 C 1.38462 * 120.06186 * 359.75085 * 25 24 23 28 28 C 1.38151 * 120.02822 * 0.02562 * 27 25 24 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 32 32 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 33 33 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 34 34 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 35 35 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 36 36 H 1.09000 * 109.47070 * 300.00153 * 6 5 4 37 37 H 1.09006 * 109.46982 * 59.99957 * 6 5 4 38 38 H 1.09000 * 109.47031 * 300.00080 * 7 6 5 39 39 H 1.09006 * 109.47145 * 59.99959 * 7 6 5 40 40 H 0.97001 * 119.99746 * 359.97438 * 8 7 6 41 41 H 0.96996 * 119.99701 * 180.02562 * 12 11 9 42 42 H 0.97000 * 120.00580 * 265.00723 * 17 2 1 43 43 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 44 44 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 45 45 H 1.08001 * 120.01529 * 359.97438 * 23 22 21 46 46 H 1.07999 * 119.98419 * 180.20967 * 24 23 22 47 47 H 1.07995 * 119.98360 * 180.02562 * 27 25 24 48 48 H 1.08000 * 120.01396 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3348 2.5628 7 6 5.5995 -1.2264 2.6277 8 7 6.0879 -1.9179 3.8234 9 6 7.4299 -1.9535 4.0935 10 1 8.1283 -1.4715 3.4254 11 6 7.8927 -2.6083 5.2267 12 7 7.0414 -3.1945 6.0417 13 14 9.7232 -2.6563 5.5955 14 1 10.2339 -1.2703 5.7484 15 1 9.9550 -3.4114 6.8531 16 1 10.4359 -3.3260 4.4781 17 7 2.0185 -0.6908 -1.1960 18 6 2.1472 -0.0185 -2.3570 19 8 1.8591 1.1584 -2.4116 20 6 2.6554 -0.7275 -3.5859 21 8 2.7084 0.1918 -4.6786 22 6 3.1492 -0.2909 -5.8705 23 6 3.5280 -1.6204 -5.9837 24 6 3.9717 -2.1108 -7.1967 25 6 4.0478 -1.2734 -8.2965 26 9 4.4871 -1.7528 -9.4808 27 6 3.6744 0.0552 -8.1839 28 6 3.2260 0.5470 -6.9733 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 1.6053 -0.2615 2.1370 33 1 1.7516 -1.7714 1.2059 34 1 3.9995 -1.0728 0.4262 35 1 3.8531 0.4371 1.3574 36 1 3.6402 -0.8756 3.4507 37 1 3.7864 -2.3851 2.5188 38 1 6.0345 -1.6853 1.7398 39 1 5.8876 -0.1760 2.6719 40 1 5.4606 -2.3499 4.4240 41 1 7.3647 -3.6517 6.8337 42 1 2.2491 -1.6319 -1.1524 43 1 3.6539 -1.1197 -3.3923 44 1 1.9842 -1.5494 -3.8349 45 1 3.4734 -2.2728 -5.1247 46 1 4.2635 -3.1468 -7.2859 47 1 3.7338 0.7072 -9.0427 48 1 2.9353 1.5835 -6.8855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176529706.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:36 Heat of formation + Delta-G solvation = -121.561954 kcal Electronic energy + Delta-G solvation = -27483.408548 eV Core-core repulsion = 23259.026141 eV Total energy + Delta-G solvation = -4224.382407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.83228 -41.49467 -40.53054 -38.36461 -37.80803 -36.78965 -34.78801 -33.15652 -32.33474 -31.88367 -30.69265 -28.88022 -28.74081 -25.92578 -24.35024 -23.77443 -23.26572 -22.10021 -21.92393 -21.53358 -19.50314 -19.12343 -18.43153 -18.38660 -17.50358 -17.38266 -17.02861 -16.67767 -16.53576 -16.23951 -15.72543 -15.60641 -15.45675 -15.27941 -15.21019 -14.67158 -14.56959 -14.28453 -14.18843 -14.05080 -13.98977 -13.38781 -13.34537 -13.18996 -13.02259 -12.87251 -12.83380 -12.44157 -12.27458 -12.19685 -11.96218 -11.90594 -11.87486 -11.80277 -11.47205 -11.38881 -10.92702 -10.91904 -10.20699 -10.12222 -9.16598 -9.00994 -7.96414 -5.25507 0.13967 0.16651 1.46742 1.49927 1.50252 1.53712 1.56225 2.54024 2.55474 2.63730 3.31612 3.36713 3.52857 3.63199 3.76852 3.80448 4.01366 4.03618 4.07562 4.12841 4.15772 4.17130 4.30998 4.36720 4.43084 4.55530 4.62008 4.66411 4.79290 4.88953 4.89207 4.94331 5.00411 5.03931 5.10022 5.12703 5.13033 5.18036 5.28782 5.33559 5.44388 5.46338 5.54618 5.56999 5.65535 6.22946 6.26465 6.52882 7.19491 7.32229 8.09413 8.32468 9.26813 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.001767 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.194551 B =15838.407905 C =18194.812236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.066 0.934 4 C -0.116 4.116 5 C -0.106 4.106 6 C -0.113 4.113 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.251 4.251 10 H 0.073 0.927 11 C -0.076 4.076 12 N -0.968 5.968 13 Si 0.975 3.025 14 H -0.279 1.279 15 H -0.293 1.293 16 H -0.276 1.276 17 N -0.705 5.705 18 C 0.513 3.487 19 O -0.572 6.572 20 C 0.036 3.964 21 O -0.314 6.314 22 C 0.109 3.891 23 C -0.179 4.179 24 C -0.112 4.112 25 C 0.038 3.962 26 F -0.150 7.150 27 C -0.112 4.112 28 C -0.133 4.133 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.011 0.989 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.419 0.581 43 H 0.122 0.878 44 H 0.128 0.872 45 H 0.168 0.832 46 H 0.158 0.842 47 H 0.158 0.842 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.993 2.037 -27.270 31.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.154 4.154 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.383 4.383 10 H 0.091 0.909 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.202 1.202 17 N -0.359 5.359 18 C 0.299 3.701 19 O -0.451 6.451 20 C -0.042 4.042 21 O -0.227 6.227 22 C 0.063 3.937 23 C -0.197 4.197 24 C -0.131 4.131 25 C 0.019 3.981 26 F -0.129 7.129 27 C -0.131 4.131 28 C -0.152 4.152 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.029 0.971 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.256 0.744 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.185 0.815 46 H 0.176 0.824 47 H 0.176 0.824 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.072 3.096 -27.325 31.359 hybrid contribution 1.083 -0.684 0.532 1.387 sum -13.989 2.411 -26.793 30.321 Atomic orbital electron populations 1.22124 0.94311 1.03049 1.02162 1.20970 0.94459 0.96705 0.83751 0.91570 1.21846 0.94667 1.02173 0.96681 1.21440 0.95829 1.00085 0.97040 1.21602 0.93622 1.01052 0.98768 1.20874 0.94367 0.94169 0.88513 1.42623 1.04475 1.65323 1.26740 1.19622 0.85406 1.27764 1.05528 0.90899 1.25608 1.02227 1.01211 0.97815 1.69809 1.34722 1.41819 1.15542 0.85189 0.79866 0.77611 0.76964 1.20510 1.21916 1.20230 1.45853 1.66654 1.14914 1.08467 1.20496 0.77525 0.86920 0.85152 1.90743 1.51032 1.17913 1.85397 1.22757 1.05292 0.92295 0.83842 1.86141 1.81026 1.38678 1.16843 1.19265 0.95689 0.93203 0.85506 1.21422 1.04087 0.94402 0.99781 1.21226 0.99469 1.01270 0.91102 1.17883 1.04391 0.93723 0.82074 1.91478 1.87650 1.88711 1.45077 1.21149 0.99000 0.94118 0.98815 1.20480 1.03455 1.01055 0.90192 0.90761 0.90665 0.93958 0.89677 0.89331 0.91134 0.92856 0.92623 0.91637 0.96240 0.97123 0.79407 0.93915 0.74385 0.86039 0.85401 0.81504 0.82421 0.82426 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.48 71.98 0.68 -1.55 16 2 C 0.15 2.29 2.57 45.00 0.12 2.40 16 3 H 0.07 1.41 7.58 -2.39 -0.02 1.39 16 4 C -0.12 -1.72 4.75 30.60 0.15 -1.57 16 5 C -0.11 -2.18 5.10 30.60 0.16 -2.03 16 6 C -0.11 -3.24 5.33 30.59 0.16 -3.07 16 7 C 0.15 5.79 6.26 86.38 0.54 6.33 16 8 N -0.75 -38.47 5.60 -343.44 -1.92 -40.40 16 9 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 10 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 11 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 12 N -0.97 -59.23 13.06 21.65 0.28 -58.95 16 13 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 17 N -0.70 -9.10 4.53 -442.52 -2.00 -11.11 16 18 C 0.51 9.30 7.87 87.66 0.69 9.99 16 19 O -0.57 -16.58 16.16 16.00 0.26 -16.33 16 20 C 0.04 0.41 5.22 71.24 0.37 0.78 16 21 O -0.31 -5.84 9.67 -73.86 -0.71 -6.55 16 22 C 0.11 1.68 6.69 22.50 0.15 1.83 16 23 C -0.18 -1.94 9.04 22.36 0.20 -1.74 16 24 C -0.11 -1.32 10.02 22.30 0.22 -1.10 16 25 C 0.04 0.57 7.30 22.37 0.16 0.74 16 26 F -0.15 -2.58 17.27 44.97 0.78 -1.80 16 27 C -0.11 -1.51 10.02 22.30 0.22 -1.29 16 28 C -0.13 -2.00 9.99 22.36 0.22 -1.77 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.32 7.75 -2.39 -0.02 1.30 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.37 20.21 7.67 -92.71 -0.71 19.49 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.42 2.68 8.60 -92.71 -0.80 1.88 16 43 H 0.12 0.76 7.65 -2.38 -0.02 0.74 16 44 H 0.13 0.56 7.67 -2.39 -0.02 0.54 16 45 H 0.17 0.74 6.30 -2.91 -0.02 0.73 16 46 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 47 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 48 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -77.63 407.25 3.52 -74.11 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.54 Total: 22.31 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 5.36 Total: -9.41 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -3.65 Total: -110.45 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.46 Total: -22.88 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -77.63 3.52 -74.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176529706.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.456 kcal (2) G-P(sol) polarization free energy of solvation -77.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds