Wall clock time and date at job start Tue Mar 31 2020 22:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46832 * 2 1 4 4 C 1.52997 * 109.47406 * 120.00015 * 2 1 3 5 5 C 1.52998 * 109.47230 * 185.00089 * 4 2 1 6 6 C 1.53005 * 109.46737 * 180.02562 * 5 4 2 7 7 C 1.53008 * 109.46772 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.46991 * 179.97438 * 7 6 5 9 9 C 1.36930 * 119.99542 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00673 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99763 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99835 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00239 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47093 * 59.99889 * 13 11 9 15 15 H 1.48499 * 109.47132 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47045 * 299.99844 * 13 11 9 17 17 N 1.46504 * 109.47280 * 240.00146 * 2 1 3 18 18 C 1.34777 * 119.99646 * 84.99627 * 17 2 1 19 19 O 1.21276 * 120.00320 * 0.02562 * 18 17 2 20 20 C 1.50705 * 119.99499 * 180.02562 * 18 17 2 21 21 O 1.42906 * 109.47037 * 180.02562 * 20 18 17 22 22 C 1.35948 * 117.00016 * 180.02562 * 21 20 18 23 23 C 1.38659 * 120.06296 * 359.97438 * 22 21 20 24 24 C 1.38182 * 119.96723 * 180.02562 * 23 22 21 25 25 C 1.38257 * 120.10006 * 359.97438 * 24 23 22 26 26 C 1.38255 * 120.12507 * 0.02562 * 25 24 23 27 27 C 1.38338 * 120.03035 * 359.97438 * 26 25 24 28 28 F 1.35094 * 120.05046 * 179.97438 * 27 26 25 29 29 H 1.09006 * 109.47064 * 60.00033 * 1 2 3 30 30 H 1.09003 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47310 * 299.99526 * 1 2 3 32 32 H 1.08993 * 109.47239 * 305.00336 * 4 2 1 33 33 H 1.09000 * 109.46858 * 65.00254 * 4 2 1 34 34 H 1.08999 * 109.47210 * 299.99813 * 5 4 2 35 35 H 1.09000 * 109.47066 * 60.00292 * 5 4 2 36 36 H 1.08999 * 109.46874 * 299.99720 * 6 5 4 37 37 H 1.08992 * 109.47248 * 59.99900 * 6 5 4 38 38 H 1.08993 * 109.47112 * 299.99926 * 7 6 5 39 39 H 1.09000 * 109.47131 * 59.99933 * 7 6 5 40 40 H 0.96996 * 119.99586 * 359.97438 * 8 7 6 41 41 H 0.97000 * 119.99700 * 180.02562 * 12 11 9 42 42 H 0.96999 * 119.99848 * 265.00103 * 17 2 1 43 43 H 1.08994 * 109.47324 * 60.00587 * 20 18 17 44 44 H 1.08998 * 109.47294 * 300.00127 * 20 18 17 45 45 H 1.07992 * 120.01857 * 0.02562 * 23 22 21 46 46 H 1.08007 * 119.94945 * 180.02562 * 24 23 22 47 47 H 1.08001 * 119.94370 * 180.02562 * 25 24 23 48 48 H 1.07994 * 119.98956 * 179.72600 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0749 -1.3351 2.5626 7 6 5.5997 -1.2265 2.6273 8 7 6.0881 -1.9171 3.8235 9 6 7.4300 -1.9525 4.0937 10 1 8.1284 -1.4717 3.4248 11 6 7.8928 -2.6074 5.2268 12 7 7.0417 -3.1938 6.0417 13 14 9.7235 -2.6563 5.5951 14 1 10.2349 -1.2706 5.7475 15 1 9.9553 -3.4102 6.8533 16 1 10.4354 -3.3266 4.4775 17 7 2.0184 -0.6906 -1.1962 18 6 2.1470 -0.0182 -2.3571 19 8 1.8589 1.1586 -2.4115 20 6 2.6489 -0.7287 -3.5878 21 8 2.6975 0.1897 -4.6815 22 6 3.1313 -0.2948 -5.8754 23 6 3.5026 -1.6257 -5.9914 24 6 3.9437 -2.1159 -7.2057 25 6 4.0150 -1.2814 -8.3057 26 6 3.6457 0.0463 -8.1946 27 6 3.2033 0.5426 -6.9814 28 9 2.8429 1.8400 -6.8722 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0727 0.4259 35 1 3.8532 0.4371 1.3573 36 1 3.6403 -0.8759 3.4505 37 1 3.7865 -2.3852 2.5185 38 1 6.0346 -1.6853 1.7395 39 1 5.8877 -0.1762 2.6716 40 1 5.4607 -2.3486 4.4244 41 1 7.3651 -3.6510 6.8337 42 1 2.2491 -1.6317 -1.1526 43 1 1.9760 -1.5504 -3.8327 44 1 3.6480 -1.1212 -3.3987 45 1 3.4472 -2.2788 -5.1332 46 1 4.2325 -3.1527 -7.2959 47 1 4.3597 -1.6673 -9.2537 48 1 3.7064 0.6973 -9.0541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176556185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:55 Heat of formation + Delta-G solvation = -98.054672 kcal Electronic energy + Delta-G solvation = -27775.799015 eV Core-core repulsion = 23552.435960 eV Total energy + Delta-G solvation = -4223.363055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.08404 -40.80267 -39.79982 -37.89124 -36.90506 -35.29127 -33.34941 -31.94816 -31.18759 -30.74456 -30.27155 -28.32856 -27.48383 -24.30972 -23.52112 -22.94345 -22.24119 -21.16347 -20.83204 -20.68217 -19.05173 -17.72837 -17.47376 -17.02770 -16.95437 -16.74993 -16.37585 -15.78446 -15.46597 -15.05477 -14.86678 -14.79387 -14.68732 -14.40392 -13.96821 -13.58000 -13.48729 -13.17842 -13.14010 -13.03569 -12.98644 -12.68782 -12.41877 -12.20335 -11.81158 -11.68058 -11.66746 -11.49677 -11.29906 -11.03158 -10.80697 -10.74266 -10.46308 -10.34072 -10.12753 -10.02248 -9.67796 -9.44827 -9.36501 -8.86180 -8.68556 -6.91307 -5.76071 -3.04556 0.63099 0.76010 2.07226 2.24485 3.08745 3.17894 3.44161 3.48202 3.49529 3.80319 4.11038 4.26998 4.37698 4.45253 4.49984 4.54476 4.63647 4.70571 4.74212 4.83911 4.92505 4.98130 5.20698 5.34658 5.40403 5.44531 5.52302 5.55084 5.57470 5.64718 5.68036 5.73931 5.84023 5.88245 5.91254 6.05582 6.09770 6.15584 6.27234 6.30537 6.36376 6.43976 6.74147 6.87619 6.91579 7.13857 7.69765 7.86632 8.43313 9.53960 10.13028 10.47637 11.46887 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.001814 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.516231 B =15432.128901 C =17275.876906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.240 4.240 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.718 5.718 18 C 0.516 3.484 19 O -0.514 6.514 20 C 0.038 3.962 21 O -0.281 6.281 22 C 0.097 3.903 23 C -0.184 4.184 24 C -0.088 4.088 25 C -0.129 4.129 26 C -0.116 4.116 27 C 0.072 3.928 28 F -0.129 7.129 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.402 0.598 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.139 0.861 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.177 1.272 -28.070 31.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.371 4.371 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.372 5.372 18 C 0.300 3.700 19 O -0.389 6.389 20 C -0.041 4.041 21 O -0.194 6.194 22 C 0.051 3.949 23 C -0.203 4.203 24 C -0.107 4.107 25 C -0.148 4.148 26 C -0.135 4.135 27 C 0.052 3.948 28 F -0.108 7.108 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.237 0.763 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.157 0.843 46 H 0.152 0.848 47 H 0.153 0.847 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.292 2.427 -28.041 31.567 hybrid contribution 0.964 -0.749 0.584 1.353 sum -13.328 1.678 -27.457 30.568 Atomic orbital electron populations 1.22186 0.95181 1.02178 1.02684 1.21098 0.93854 0.97810 0.83352 0.89123 1.21947 0.96922 1.00970 0.96625 1.21531 0.93895 1.01203 0.98653 1.21728 0.97278 1.00241 0.97106 1.20650 0.90984 0.95353 0.90561 1.42376 1.05332 1.64979 1.25185 1.19207 0.83931 1.28448 1.05513 0.91289 1.24755 0.97758 1.00948 0.97709 1.69654 1.32865 1.40698 1.15142 0.86247 0.85075 0.77494 0.77263 1.21261 1.21662 1.21282 1.45938 1.67741 1.14220 1.09279 1.19908 0.78527 0.87498 0.84022 1.90776 1.48182 1.15442 1.84464 1.22573 1.03349 0.92498 0.85637 1.86227 1.80768 1.36888 1.15476 1.19081 0.97705 0.92737 0.85412 1.21218 1.05302 0.93577 1.00206 1.21057 0.97432 1.00347 0.91830 1.20973 1.01565 0.92697 0.99538 1.21072 0.99725 0.97015 0.95713 1.17027 1.05816 0.79024 0.92897 1.91535 1.89573 1.33082 1.96601 0.92221 0.92387 0.91303 0.89995 0.91229 0.92192 0.91904 0.92010 0.92113 0.96670 0.96569 0.78347 0.93493 0.76331 0.88696 0.88440 0.84301 0.84803 0.84705 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.48 37.16 0.35 -1.01 16 2 C 0.14 1.30 2.57 -67.93 -0.17 1.12 16 3 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 4 C -0.13 -1.14 4.75 -26.73 -0.13 -1.26 16 5 C -0.11 -1.33 5.10 -26.73 -0.14 -1.47 16 6 C -0.13 -1.93 5.33 -26.72 -0.14 -2.07 16 7 C 0.15 3.08 6.26 -4.04 -0.03 3.06 16 8 N -0.73 -19.02 5.60 -59.90 -0.34 -19.36 16 9 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 13 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 N -0.72 -5.78 4.53 -53.80 -0.24 -6.03 16 18 C 0.52 5.42 7.87 -10.98 -0.09 5.34 16 19 O -0.51 -7.91 16.16 -14.35 -0.23 -8.14 16 20 C 0.04 0.29 5.22 36.01 0.19 0.48 16 21 O -0.28 -3.24 9.53 -39.48 -0.38 -3.62 16 22 C 0.10 0.95 6.69 -39.18 -0.26 0.68 16 23 C -0.18 -1.23 9.04 -39.45 -0.36 -1.58 16 24 C -0.09 -0.48 10.04 -39.59 -0.40 -0.88 16 25 C -0.13 -0.71 10.04 -39.57 -0.40 -1.10 16 26 C -0.12 -0.82 10.02 -39.54 -0.40 -1.22 16 27 C 0.07 0.73 7.31 -39.29 -0.29 0.44 16 28 F -0.13 -1.60 17.11 2.25 0.04 -1.56 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.40 2.13 8.60 -40.82 -0.35 1.78 16 43 H 0.10 0.44 7.66 -51.93 -0.40 0.04 16 44 H 0.10 0.53 7.66 -51.93 -0.40 0.13 16 45 H 0.14 0.58 6.30 -52.49 -0.33 0.25 16 46 H 0.13 0.40 8.06 -52.48 -0.42 -0.02 16 47 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 48 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 407.06 15.07 6.13 6.13 Total: -1.00 -36.48 407.06 -9.44 -45.92 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.63 Total: 3.90 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.50 Total: -7.04 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.15 Total: -53.18 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.61 Total: -11.75 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.48 -9.44 -45.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176556185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.134 kcal (2) G-P(sol) polarization free energy of solvation -36.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds