Wall clock time and date at job start Tue Mar 31 2020 22:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46832 * 2 1 4 4 C 1.52997 * 109.47406 * 120.00015 * 2 1 3 5 5 C 1.52998 * 109.47230 * 185.00089 * 4 2 1 6 6 C 1.53005 * 109.46737 * 180.02562 * 5 4 2 7 7 C 1.53008 * 109.46772 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.46991 * 179.97438 * 7 6 5 9 9 C 1.36930 * 119.99542 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00673 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99763 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99835 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00239 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47093 * 59.99889 * 13 11 9 15 15 H 1.48499 * 109.47132 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47045 * 299.99844 * 13 11 9 17 17 N 1.46504 * 109.47280 * 240.00146 * 2 1 3 18 18 C 1.34777 * 119.99646 * 84.99627 * 17 2 1 19 19 O 1.21276 * 120.00320 * 0.02562 * 18 17 2 20 20 C 1.50705 * 119.99499 * 180.02562 * 18 17 2 21 21 O 1.42906 * 109.47037 * 180.02562 * 20 18 17 22 22 C 1.35948 * 117.00016 * 180.02562 * 21 20 18 23 23 C 1.38659 * 120.06296 * 359.97438 * 22 21 20 24 24 C 1.38182 * 119.96723 * 180.02562 * 23 22 21 25 25 C 1.38257 * 120.10006 * 359.97438 * 24 23 22 26 26 C 1.38255 * 120.12507 * 0.02562 * 25 24 23 27 27 C 1.38338 * 120.03035 * 359.97438 * 26 25 24 28 28 F 1.35094 * 120.05046 * 179.97438 * 27 26 25 29 29 H 1.09006 * 109.47064 * 60.00033 * 1 2 3 30 30 H 1.09003 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47310 * 299.99526 * 1 2 3 32 32 H 1.08993 * 109.47239 * 305.00336 * 4 2 1 33 33 H 1.09000 * 109.46858 * 65.00254 * 4 2 1 34 34 H 1.08999 * 109.47210 * 299.99813 * 5 4 2 35 35 H 1.09000 * 109.47066 * 60.00292 * 5 4 2 36 36 H 1.08999 * 109.46874 * 299.99720 * 6 5 4 37 37 H 1.08992 * 109.47248 * 59.99900 * 6 5 4 38 38 H 1.08993 * 109.47112 * 299.99926 * 7 6 5 39 39 H 1.09000 * 109.47131 * 59.99933 * 7 6 5 40 40 H 0.96996 * 119.99586 * 359.97438 * 8 7 6 41 41 H 0.97000 * 119.99700 * 180.02562 * 12 11 9 42 42 H 0.96999 * 119.99848 * 265.00103 * 17 2 1 43 43 H 1.08994 * 109.47324 * 60.00587 * 20 18 17 44 44 H 1.08998 * 109.47294 * 300.00127 * 20 18 17 45 45 H 1.07992 * 120.01857 * 0.02562 * 23 22 21 46 46 H 1.08007 * 119.94945 * 180.02562 * 24 23 22 47 47 H 1.08001 * 119.94370 * 180.02562 * 25 24 23 48 48 H 1.07994 * 119.98956 * 179.72600 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0749 -1.3351 2.5626 7 6 5.5997 -1.2265 2.6273 8 7 6.0881 -1.9171 3.8235 9 6 7.4300 -1.9525 4.0937 10 1 8.1284 -1.4717 3.4248 11 6 7.8928 -2.6074 5.2268 12 7 7.0417 -3.1938 6.0417 13 14 9.7235 -2.6563 5.5951 14 1 10.2349 -1.2706 5.7475 15 1 9.9553 -3.4102 6.8533 16 1 10.4354 -3.3266 4.4775 17 7 2.0184 -0.6906 -1.1962 18 6 2.1470 -0.0182 -2.3571 19 8 1.8589 1.1586 -2.4115 20 6 2.6489 -0.7287 -3.5878 21 8 2.6975 0.1897 -4.6815 22 6 3.1313 -0.2948 -5.8754 23 6 3.5026 -1.6257 -5.9914 24 6 3.9437 -2.1159 -7.2057 25 6 4.0150 -1.2814 -8.3057 26 6 3.6457 0.0463 -8.1946 27 6 3.2033 0.5426 -6.9814 28 9 2.8429 1.8400 -6.8722 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6055 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0727 0.4259 35 1 3.8532 0.4371 1.3573 36 1 3.6403 -0.8759 3.4505 37 1 3.7865 -2.3852 2.5185 38 1 6.0346 -1.6853 1.7395 39 1 5.8877 -0.1762 2.6716 40 1 5.4607 -2.3486 4.4244 41 1 7.3651 -3.6510 6.8337 42 1 2.2491 -1.6317 -1.1526 43 1 1.9760 -1.5504 -3.8327 44 1 3.6480 -1.1212 -3.3987 45 1 3.4472 -2.2788 -5.1332 46 1 4.2325 -3.1527 -7.2959 47 1 4.3597 -1.6673 -9.2537 48 1 3.7064 0.6973 -9.0541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176556185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:54 Heat of formation + Delta-G solvation = -121.345306 kcal Electronic energy + Delta-G solvation = -27776.808972 eV Core-core repulsion = 23552.435960 eV Total energy + Delta-G solvation = -4224.373013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.85925 -41.48249 -40.50537 -38.50541 -37.89669 -36.81414 -34.80628 -33.17717 -32.01928 -31.66866 -31.07648 -28.97639 -28.79099 -25.93735 -24.24340 -23.64444 -23.41830 -22.11693 -21.93992 -21.57059 -19.65797 -19.12835 -18.39269 -18.11340 -17.62194 -17.46484 -17.11353 -16.68567 -16.55336 -16.27047 -15.87034 -15.55757 -15.46004 -15.37246 -15.23967 -15.12341 -14.58513 -14.19438 -14.16135 -14.05255 -13.70677 -13.37260 -13.21288 -13.04208 -12.88630 -12.83955 -12.67966 -12.45766 -12.29910 -12.20284 -12.17341 -12.14858 -11.88465 -11.82119 -11.48842 -11.40589 -10.97223 -10.93183 -10.16185 -9.95406 -9.27016 -9.01576 -7.96688 -5.25892 0.11928 0.24387 1.44722 1.46464 1.47329 1.49804 1.56100 2.54882 2.55225 2.60083 3.24682 3.36349 3.50159 3.62497 3.79765 3.90788 4.00426 4.02259 4.06086 4.08219 4.14476 4.27949 4.33450 4.34787 4.41010 4.50324 4.60409 4.64865 4.77047 4.87749 4.92254 4.96483 4.98772 5.02264 5.08503 5.10677 5.25667 5.27013 5.31285 5.42269 5.42993 5.45695 5.53234 5.54785 5.65843 6.17905 6.26112 6.48957 7.15924 7.31875 8.08804 8.32162 9.26537 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.001814 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.516231 B =15432.128901 C =17275.876906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.145 3.855 3 H 0.064 0.936 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.252 4.252 10 H 0.073 0.927 11 C -0.077 4.077 12 N -0.968 5.968 13 Si 0.976 3.024 14 H -0.279 1.279 15 H -0.293 1.293 16 H -0.276 1.276 17 N -0.702 5.702 18 C 0.512 3.488 19 O -0.574 6.574 20 C 0.038 3.962 21 O -0.321 6.321 22 C 0.074 3.926 23 C -0.183 4.183 24 C -0.083 4.083 25 C -0.125 4.125 26 C -0.119 4.119 27 C 0.027 3.973 28 F -0.156 7.156 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.010 0.990 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.419 0.581 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.166 0.834 46 H 0.167 0.833 47 H 0.166 0.834 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.648 -1.192 -29.407 32.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.383 4.383 10 H 0.091 0.909 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.202 1.202 17 N -0.357 5.357 18 C 0.298 3.702 19 O -0.453 6.453 20 C -0.040 4.040 21 O -0.235 6.235 22 C 0.028 3.972 23 C -0.201 4.201 24 C -0.101 4.101 25 C -0.143 4.143 26 C -0.137 4.137 27 C 0.007 3.993 28 F -0.135 7.135 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.028 0.972 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.257 0.743 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.184 0.816 46 H 0.185 0.815 47 H 0.183 0.817 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.760 -0.064 -29.407 32.467 hybrid contribution 0.806 -0.013 0.936 1.235 sum -12.954 -0.076 -28.472 31.280 Atomic orbital electron populations 1.22124 0.94270 1.03123 1.02108 1.20987 0.94509 0.96679 0.83791 0.91766 1.21838 0.94659 1.02219 0.96552 1.21443 0.95841 1.00049 0.97112 1.21599 0.93627 1.01083 0.98690 1.20871 0.94362 0.94150 0.88539 1.42617 1.04495 1.65381 1.26656 1.19616 0.85383 1.27814 1.05521 0.90927 1.25613 1.02272 1.01184 0.97814 1.69808 1.34740 1.41788 1.15550 0.85182 0.79821 0.77600 0.76984 1.20557 1.21883 1.20173 1.45830 1.66604 1.14891 1.08360 1.20511 0.77549 0.86918 0.85251 1.90750 1.50985 1.18107 1.85451 1.22782 1.05463 0.92186 0.83558 1.86162 1.81519 1.39016 1.16761 1.19360 0.99007 0.94066 0.84723 1.21570 1.04322 0.92389 1.01829 1.21531 0.95706 1.01804 0.91053 1.21406 1.00146 0.91754 1.01015 1.21346 0.99124 0.98230 0.95028 1.17630 1.08428 0.78468 0.94735 1.91451 1.90228 1.34954 1.96856 0.94178 0.90589 0.90567 0.89602 0.89168 0.91158 0.92979 0.92599 0.91525 0.96211 0.97208 0.79388 0.93898 0.74283 0.85176 0.85837 0.81634 0.81540 0.81668 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.48 71.98 0.68 -1.76 16 2 C 0.14 2.48 2.57 44.99 0.12 2.60 16 3 H 0.06 1.48 7.58 -2.39 -0.02 1.46 16 4 C -0.11 -1.81 4.75 30.59 0.15 -1.66 16 5 C -0.11 -2.29 5.10 30.60 0.16 -2.13 16 6 C -0.11 -3.28 5.33 30.60 0.16 -3.12 16 7 C 0.15 5.86 6.26 86.38 0.54 6.41 16 8 N -0.75 -38.73 5.60 -343.44 -1.92 -40.65 16 9 C -0.25 -14.33 9.99 84.04 0.84 -13.49 16 10 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 11 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 12 N -0.97 -59.40 13.06 21.65 0.28 -59.11 16 13 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 17 N -0.70 -10.23 4.53 -442.53 -2.00 -12.23 16 18 C 0.51 10.63 7.87 87.66 0.69 11.32 16 19 O -0.57 -18.64 16.16 16.02 0.26 -18.38 16 20 C 0.04 0.53 5.22 71.24 0.37 0.90 16 21 O -0.32 -7.61 9.53 -73.93 -0.70 -8.32 16 22 C 0.07 1.44 6.69 22.53 0.15 1.59 16 23 C -0.18 -1.99 9.04 22.36 0.20 -1.79 16 24 C -0.08 -0.62 10.04 22.26 0.22 -0.39 16 25 C -0.13 -1.03 10.04 22.28 0.22 -0.81 16 26 C -0.12 -1.61 10.02 22.30 0.22 -1.39 16 27 C 0.03 0.57 7.31 22.46 0.16 0.74 16 28 F -0.16 -4.29 17.11 44.97 0.77 -3.52 16 29 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.38 7.75 -2.39 -0.02 1.36 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.37 20.32 7.67 -92.71 -0.71 19.61 16 41 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.42 3.17 8.60 -92.71 -0.80 2.37 16 43 H 0.13 0.83 7.66 -2.39 -0.02 0.81 16 44 H 0.12 1.03 7.66 -2.39 -0.02 1.01 16 45 H 0.17 0.75 6.30 -2.91 -0.02 0.73 16 46 H 0.17 0.15 8.06 -2.91 -0.02 0.13 16 47 H 0.17 0.32 8.06 -2.91 -0.02 0.29 16 48 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -83.05 407.06 3.53 -79.52 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.54 Total: 21.38 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 5.36 Total: -6.95 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -3.65 Total: -112.00 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.45 Total: -26.70 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.77 Total: -3.52 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -83.05 3.53 -79.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176556185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.826 kcal (2) G-P(sol) polarization free energy of solvation -83.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds