Wall clock time and date at job start Tue Mar 31 2020 20:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46894 * 182.42317 * 3 2 1 5 5 C 1.46901 * 111.00115 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46950 * 179.97438 * 5 4 3 7 7 C 1.53007 * 109.47067 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47224 * 179.97438 * 7 6 5 9 9 C 1.46505 * 119.99619 * 90.00069 * 8 7 6 10 10 C 1.52997 * 109.47212 * 89.99960 * 9 8 7 11 11 C 1.54267 * 110.03373 * 292.90986 * 10 9 8 12 12 C 1.54968 * 104.16137 * 217.13581 * 11 10 9 13 13 C 1.54884 * 102.77441 * 37.88396 * 12 11 10 14 14 C 1.53874 * 110.03593 * 175.68906 * 10 9 8 15 15 C 1.34774 * 120.00119 * 269.99893 * 8 7 6 16 16 O 1.21270 * 120.00172 * 0.02562 * 15 8 7 17 17 C 1.50706 * 119.99638 * 180.02562 * 15 8 7 18 18 S 1.81000 * 109.46673 * 180.02562 * 17 15 8 19 19 C 1.76203 * 99.99740 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99908 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99865 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99806 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99747 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46924 * 59.99895 * 23 21 19 25 25 H 1.48499 * 109.47068 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46809 * 299.99810 * 23 21 19 27 27 H 4.40888 * 5.52274 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.47451 * 62.42290 * 3 2 1 29 29 H 1.08994 * 109.47358 * 302.41969 * 3 2 1 30 30 H 1.00904 * 110.99839 * 303.95415 * 4 3 2 31 31 H 1.09002 * 109.46811 * 60.00053 * 5 4 3 32 32 H 1.08993 * 109.47422 * 299.99910 * 5 4 3 33 33 H 1.09002 * 109.47165 * 60.00459 * 6 5 4 34 34 H 1.08997 * 109.47215 * 299.99754 * 6 5 4 35 35 H 1.09006 * 109.46834 * 59.99650 * 7 6 5 36 36 H 1.09003 * 109.46788 * 300.00337 * 7 6 5 37 37 H 1.09002 * 109.47068 * 210.00020 * 9 8 7 38 38 H 1.09001 * 109.47372 * 330.00108 * 9 8 7 39 39 H 1.09004 * 110.01939 * 54.29375 * 10 9 8 40 40 H 1.09001 * 110.48609 * 335.77840 * 11 10 9 41 41 H 1.08999 * 110.49311 * 98.42344 * 11 10 9 42 42 H 1.08997 * 110.72048 * 279.57487 * 12 11 10 43 43 H 1.08993 * 110.92252 * 156.29196 * 12 11 10 44 44 H 1.09009 * 110.48779 * 203.40596 * 13 12 11 45 45 H 1.09001 * 110.59973 * 80.82109 * 13 12 11 46 46 H 1.09003 * 110.03243 * 238.56963 * 14 10 9 47 47 H 1.08996 * 110.02723 * 359.95243 * 14 10 9 48 48 H 1.09004 * 109.46731 * 300.00166 * 17 15 8 49 49 H 1.08993 * 109.47109 * 60.00140 * 17 15 8 50 50 H 0.97005 * 119.99757 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3847 0.0586 5 6 4.6035 1.4245 0.0608 6 6 5.0740 2.8791 0.1217 7 6 6.6035 2.9207 0.1234 8 7 7.0541 4.3134 0.1811 9 6 7.2794 4.9573 1.4777 10 6 8.7304 4.7381 1.9107 11 6 8.9731 3.2440 2.2084 12 6 9.9353 3.2510 3.4232 13 6 9.4141 4.4413 4.2661 14 6 9.0111 5.4992 3.2182 15 6 7.2614 5.0024 -0.9585 16 8 7.0745 4.4696 -2.0317 17 6 7.7255 6.4350 -0.8991 18 16 7.9103 7.0795 -2.5803 19 6 8.4449 8.7198 -2.2221 20 1 8.5615 9.0379 -1.1966 21 6 8.7153 9.6033 -3.2579 22 7 8.5727 9.2157 -4.5076 23 14 9.2814 11.3425 -2.8781 24 1 10.5503 11.2930 -2.1083 25 1 9.5019 12.0798 -4.1481 26 1 8.2425 12.0371 -2.0759 27 1 -1.0502 -0.0003 -0.0002 28 1 3.0096 -0.4749 -0.9108 29 1 3.0096 -0.5501 0.8674 30 1 2.7592 1.9334 -0.7003 31 1 4.9810 0.9587 -0.8495 32 1 4.9803 0.8838 0.9289 33 1 4.6966 3.3453 1.0318 34 1 4.6973 3.4195 -0.7466 35 1 6.9807 2.4545 -0.7869 36 1 6.9807 2.3801 0.9916 37 1 7.0834 6.0261 1.3915 38 1 6.6093 4.5237 2.2200 39 1 9.4088 5.0777 1.1279 40 1 8.0367 2.7495 2.4666 41 1 9.4405 2.7556 1.3534 42 1 10.9618 3.4259 3.1011 43 1 9.8613 2.3191 3.9837 44 1 10.2034 4.8258 4.9122 45 1 8.5493 4.1423 4.8584 46 1 9.8261 6.2077 3.0702 47 1 8.1138 6.0254 3.5438 48 1 6.9907 7.0328 -0.3598 49 1 8.6842 6.4852 -0.3829 50 1 8.7620 9.8331 -5.2315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177218435.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:38 Heat of formation + Delta-G solvation = -1.675811 kcal Electronic energy + Delta-G solvation = -26687.934173 eV Core-core repulsion = 23034.963595 eV Total energy + Delta-G solvation = -3652.970578 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.92946 -38.12261 -37.28875 -35.34908 -33.65985 -32.41972 -31.82723 -29.72114 -29.24294 -28.72886 -26.61131 -25.46536 -24.82003 -23.64754 -21.79860 -20.79614 -19.95920 -19.01726 -18.52347 -17.66357 -16.77559 -16.37719 -16.22076 -15.63850 -15.48874 -14.91678 -14.83825 -14.79139 -14.58557 -14.28232 -13.90452 -13.70150 -13.50293 -13.11861 -13.02546 -12.65880 -12.47900 -12.28949 -12.21234 -11.80587 -11.67966 -11.33308 -11.23439 -11.16392 -11.03856 -11.03211 -10.98583 -10.86823 -10.75846 -10.74964 -10.66175 -10.51085 -10.47237 -9.80143 -9.32109 -9.04953 -8.80255 -8.47759 -8.21273 -6.48734 -6.20555 -3.90904 2.41460 2.55857 2.96001 3.08422 3.23785 3.26250 3.29458 3.60950 3.93250 4.21466 4.23383 4.43760 4.48826 4.54750 4.77083 4.89845 4.97221 5.05164 5.08161 5.14078 5.14687 5.18789 5.24224 5.29321 5.33466 5.36504 5.46023 5.50649 5.53321 5.60985 5.62941 5.66422 5.67144 5.73060 5.77478 5.84528 5.92712 5.95484 6.03781 6.09708 6.14694 6.15518 6.18759 6.31661 6.61023 6.75557 6.98730 7.32708 7.58250 7.60644 8.36013 8.60298 9.24646 10.86823 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007932 B = 0.002849 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.236293 B = 9826.704092 C =12691.884569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.187 4.187 3 C 0.166 3.834 4 N -0.688 5.688 5 C 0.063 3.937 6 C -0.134 4.134 7 C 0.117 3.883 8 N -0.616 5.616 9 C 0.118 3.882 10 C -0.114 4.114 11 C -0.116 4.116 12 C -0.126 4.126 13 C -0.123 4.123 14 C -0.119 4.119 15 C 0.534 3.466 16 O -0.517 6.517 17 C -0.149 4.149 18 S -0.063 6.063 19 C -0.534 4.534 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.917 3.083 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.218 0.782 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.348 0.652 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.088 0.912 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 -16.704 17.473 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.187 4.187 3 C 0.038 3.962 4 N -0.320 5.320 5 C -0.067 4.067 6 C -0.173 4.173 7 C -0.006 4.006 8 N -0.350 5.350 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.154 4.154 12 C -0.164 4.164 13 C -0.161 4.161 14 C -0.158 4.158 15 C 0.322 3.678 16 O -0.391 6.391 17 C -0.300 4.300 18 S 0.164 5.836 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.235 0.765 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.166 0.834 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.107 0.893 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.897 -17.399 16.350 24.593 hybrid contribution 0.555 1.592 0.618 1.795 sum -5.342 -15.807 16.968 23.798 Atomic orbital electron populations 1.24945 0.95961 0.99191 1.01236 1.22938 0.94333 1.01191 1.00282 1.18844 0.84660 0.91037 1.01672 1.60456 1.08519 1.10479 1.52521 1.21899 0.86552 0.97401 1.00811 1.21935 0.96111 0.95816 1.03444 1.21387 0.93372 0.82806 1.03073 1.47912 1.68442 1.12648 1.06045 1.21723 0.95462 0.98756 0.84581 1.22282 0.97323 0.95813 0.97918 1.22484 0.99200 0.95897 0.97805 1.22517 0.99296 0.98056 0.96485 1.22343 1.00477 0.95799 0.97480 1.22148 1.01615 0.97847 0.94142 1.20321 0.76313 0.87965 0.83197 1.90684 1.50001 1.70068 1.28344 1.23570 1.03612 0.94759 1.08050 1.85378 1.87931 1.11905 0.98408 1.22812 1.52542 0.97475 0.95399 0.91036 1.24984 0.95047 0.99082 0.94442 1.70007 1.45764 1.36034 0.98512 0.86244 0.79186 0.82402 0.77796 1.19948 1.20824 1.19929 0.76544 0.92702 0.88744 0.83371 0.94546 0.90729 0.91021 0.91208 0.90047 0.90539 0.90020 0.90486 0.90307 0.91538 0.91719 0.91610 0.91880 0.91936 0.91790 0.91481 0.91503 0.89425 0.89344 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 19.25 29.55 0.57 -1.09 16 2 C -0.19 -1.80 13.60 -37.12 -0.50 -2.30 16 3 C 0.17 1.37 6.16 -6.61 -0.04 1.33 16 4 N -0.69 -6.47 6.47 -116.89 -0.76 -7.23 16 5 C 0.06 0.55 5.69 -3.82 -0.02 0.53 16 6 C -0.13 -1.42 5.80 -26.73 -0.15 -1.58 16 7 C 0.12 1.32 5.09 -4.04 -0.02 1.30 16 8 N -0.62 -8.30 2.39 -173.68 -0.41 -8.72 16 9 C 0.12 1.27 4.36 -4.04 -0.02 1.25 16 10 C -0.11 -1.16 3.14 -89.50 -0.28 -1.44 16 11 C -0.12 -1.04 5.23 -25.03 -0.13 -1.17 16 12 C -0.13 -1.01 6.91 -24.70 -0.17 -1.18 16 13 C -0.12 -0.96 6.83 -25.08 -0.17 -1.13 16 14 C -0.12 -1.07 6.46 -25.61 -0.17 -1.23 16 15 C 0.53 9.96 7.69 -10.98 -0.08 9.88 16 16 O -0.52 -11.60 15.44 5.57 0.09 -11.51 16 17 C -0.15 -3.03 4.71 36.01 0.17 -2.86 16 18 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 20 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 23 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 27 H 0.22 1.10 7.80 -54.08 -0.42 0.67 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.35 3.40 8.71 -39.29 -0.34 3.06 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.07 7.42 -51.93 -0.39 0.68 16 36 H 0.08 0.67 5.65 -51.93 -0.29 0.38 16 37 H 0.08 0.93 6.44 -51.93 -0.33 0.59 16 38 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 39 H 0.08 0.99 7.35 -51.93 -0.38 0.60 16 40 H 0.07 0.54 6.22 -51.93 -0.32 0.21 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 48 H 0.09 1.67 7.40 -51.91 -0.38 1.28 16 49 H 0.09 1.68 7.30 -51.92 -0.38 1.30 16 50 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 418.62 15.07 6.31 6.31 Total: -1.00 -34.04 418.62 -10.78 -44.82 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.67 Total: 1.93 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -0.83 Total: -12.59 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: -0.44 Total: -41.43 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.04 -10.78 -44.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177218435.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.147 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds