Wall clock time and date at job start Tue Mar 31 2020 20:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46894 * 182.42317 * 3 2 1 5 5 C 1.46901 * 111.00115 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46950 * 179.97438 * 5 4 3 7 7 C 1.53007 * 109.47067 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47224 * 179.97438 * 7 6 5 9 9 C 1.46505 * 119.99619 * 90.00069 * 8 7 6 10 10 C 1.52997 * 109.47212 * 89.99960 * 9 8 7 11 11 C 1.54267 * 110.03373 * 292.90986 * 10 9 8 12 12 C 1.54968 * 104.16137 * 217.13581 * 11 10 9 13 13 C 1.54884 * 102.77441 * 37.88396 * 12 11 10 14 14 C 1.53874 * 110.03593 * 175.68906 * 10 9 8 15 15 C 1.34774 * 120.00119 * 269.99893 * 8 7 6 16 16 O 1.21270 * 120.00172 * 0.02562 * 15 8 7 17 17 C 1.50706 * 119.99638 * 180.02562 * 15 8 7 18 18 S 1.81000 * 109.46673 * 180.02562 * 17 15 8 19 19 C 1.76203 * 99.99740 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99908 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99865 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99806 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99747 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46924 * 59.99895 * 23 21 19 25 25 H 1.48499 * 109.47068 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46809 * 299.99810 * 23 21 19 27 27 H 4.40888 * 5.52274 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.47451 * 62.42290 * 3 2 1 29 29 H 1.08994 * 109.47358 * 302.41969 * 3 2 1 30 30 H 1.00904 * 110.99839 * 303.95415 * 4 3 2 31 31 H 1.09002 * 109.46811 * 60.00053 * 5 4 3 32 32 H 1.08993 * 109.47422 * 299.99910 * 5 4 3 33 33 H 1.09002 * 109.47165 * 60.00459 * 6 5 4 34 34 H 1.08997 * 109.47215 * 299.99754 * 6 5 4 35 35 H 1.09006 * 109.46834 * 59.99650 * 7 6 5 36 36 H 1.09003 * 109.46788 * 300.00337 * 7 6 5 37 37 H 1.09002 * 109.47068 * 210.00020 * 9 8 7 38 38 H 1.09001 * 109.47372 * 330.00108 * 9 8 7 39 39 H 1.09004 * 110.01939 * 54.29375 * 10 9 8 40 40 H 1.09001 * 110.48609 * 335.77840 * 11 10 9 41 41 H 1.08999 * 110.49311 * 98.42344 * 11 10 9 42 42 H 1.08997 * 110.72048 * 279.57487 * 12 11 10 43 43 H 1.08993 * 110.92252 * 156.29196 * 12 11 10 44 44 H 1.09009 * 110.48779 * 203.40596 * 13 12 11 45 45 H 1.09001 * 110.59973 * 80.82109 * 13 12 11 46 46 H 1.09003 * 110.03243 * 238.56963 * 14 10 9 47 47 H 1.08996 * 110.02723 * 359.95243 * 14 10 9 48 48 H 1.09004 * 109.46731 * 300.00166 * 17 15 8 49 49 H 1.08993 * 109.47109 * 60.00140 * 17 15 8 50 50 H 0.97005 * 119.99757 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3847 0.0586 5 6 4.6035 1.4245 0.0608 6 6 5.0740 2.8791 0.1217 7 6 6.6035 2.9207 0.1234 8 7 7.0541 4.3134 0.1811 9 6 7.2794 4.9573 1.4777 10 6 8.7304 4.7381 1.9107 11 6 8.9731 3.2440 2.2084 12 6 9.9353 3.2510 3.4232 13 6 9.4141 4.4413 4.2661 14 6 9.0111 5.4992 3.2182 15 6 7.2614 5.0024 -0.9585 16 8 7.0745 4.4696 -2.0317 17 6 7.7255 6.4350 -0.8991 18 16 7.9103 7.0795 -2.5803 19 6 8.4449 8.7198 -2.2221 20 1 8.5615 9.0379 -1.1966 21 6 8.7153 9.6033 -3.2579 22 7 8.5727 9.2157 -4.5076 23 14 9.2814 11.3425 -2.8781 24 1 10.5503 11.2930 -2.1083 25 1 9.5019 12.0798 -4.1481 26 1 8.2425 12.0371 -2.0759 27 1 -1.0502 -0.0003 -0.0002 28 1 3.0096 -0.4749 -0.9108 29 1 3.0096 -0.5501 0.8674 30 1 2.7592 1.9334 -0.7003 31 1 4.9810 0.9587 -0.8495 32 1 4.9803 0.8838 0.9289 33 1 4.6966 3.3453 1.0318 34 1 4.6973 3.4195 -0.7466 35 1 6.9807 2.4545 -0.7869 36 1 6.9807 2.3801 0.9916 37 1 7.0834 6.0261 1.3915 38 1 6.6093 4.5237 2.2200 39 1 9.4088 5.0777 1.1279 40 1 8.0367 2.7495 2.4666 41 1 9.4405 2.7556 1.3534 42 1 10.9618 3.4259 3.1011 43 1 9.8613 2.3191 3.9837 44 1 10.2034 4.8258 4.9122 45 1 8.5493 4.1423 4.8584 46 1 9.8261 6.2077 3.0702 47 1 8.1138 6.0254 3.5438 48 1 6.9907 7.0328 -0.3598 49 1 8.6842 6.4852 -0.3829 50 1 8.7620 9.8331 -5.2315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177218435.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:37 Heat of formation + Delta-G solvation = -22.101629 kcal Electronic energy + Delta-G solvation = -26688.819903 eV Core-core repulsion = 23034.963595 eV Total energy + Delta-G solvation = -3653.856308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.15806 -39.08656 -38.05281 -36.45276 -34.59366 -34.45978 -32.70033 -30.82382 -30.38576 -29.47012 -27.77164 -27.33324 -25.68392 -24.59796 -22.64087 -21.47098 -20.84280 -20.39264 -19.47130 -19.14523 -18.05964 -17.52645 -17.01617 -16.88744 -16.70100 -16.34618 -15.99977 -15.64301 -15.60669 -15.52878 -15.10454 -14.64590 -14.49940 -14.41894 -14.15840 -13.91313 -13.59251 -13.18606 -13.15641 -13.09473 -12.99308 -12.87130 -12.62945 -12.52941 -12.12939 -11.91126 -11.84841 -11.79444 -11.75617 -11.65002 -11.44729 -11.38091 -11.26139 -11.18032 -11.13224 -10.84271 -10.27912 -9.64460 -9.49993 -8.67920 -8.35159 -6.13467 1.25328 1.42794 1.45022 1.54739 1.58697 1.75206 1.89670 2.12766 2.27180 2.98727 3.23340 3.27906 3.59304 3.62646 3.71121 3.78813 3.89573 4.03767 4.12248 4.21712 4.24606 4.31162 4.42374 4.45566 4.48270 4.51022 4.57579 4.59422 4.63526 4.69239 4.76057 4.80651 4.87998 4.94289 4.95873 5.07320 5.08038 5.14307 5.15508 5.25274 5.31683 5.39060 5.40373 5.49905 5.54973 5.68584 5.94203 6.18735 6.23118 6.30699 6.68285 7.05788 7.17787 8.73876 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007932 B = 0.002849 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.236293 B = 9826.704092 C =12691.884569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.223 4.223 3 C 0.165 3.835 4 N -0.696 5.696 5 C 0.069 3.931 6 C -0.123 4.123 7 C 0.117 3.883 8 N -0.599 5.599 9 C 0.113 3.887 10 C -0.112 4.112 11 C -0.115 4.115 12 C -0.125 4.125 13 C -0.119 4.119 14 C -0.119 4.119 15 C 0.532 3.468 16 O -0.564 6.564 17 C -0.122 4.122 18 S -0.152 6.152 19 C -0.545 4.545 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.261 1.261 27 H 0.244 0.756 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.342 0.658 31 H 0.033 0.967 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.049 0.951 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -17.009 20.944 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.224 4.224 3 C 0.038 3.962 4 N -0.327 5.327 5 C -0.060 4.060 6 C -0.162 4.162 7 C -0.005 4.005 8 N -0.331 5.331 9 C -0.009 4.009 10 C -0.132 4.132 11 C -0.152 4.152 12 C -0.162 4.162 13 C -0.157 4.157 14 C -0.157 4.157 15 C 0.320 3.680 16 O -0.443 6.443 17 C -0.273 4.273 18 S 0.075 5.925 19 C -0.693 4.693 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.186 1.186 25 H -0.203 1.203 26 H -0.186 1.186 27 H 0.261 0.739 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.051 0.949 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.262 -17.732 19.886 27.369 hybrid contribution 0.615 1.581 -0.370 1.737 sum -5.647 -16.150 19.516 25.953 Atomic orbital electron populations 1.25753 0.96935 0.98035 1.00236 1.23465 0.95298 1.02302 1.01322 1.18920 0.84285 0.90443 1.02568 1.60489 1.08687 1.11243 1.52283 1.21853 0.86394 0.96062 1.01698 1.21803 0.95249 0.96937 1.02231 1.21579 0.93943 0.81275 1.03742 1.47877 1.66387 1.13268 1.05564 1.22019 0.96708 0.98671 0.83542 1.22221 0.95989 0.97154 0.97821 1.22483 1.00224 0.94707 0.97834 1.22512 0.98506 0.99009 0.96196 1.22337 1.01177 0.95025 0.97112 1.22143 1.01818 0.98011 0.93704 1.20069 0.76453 0.87456 0.84026 1.90667 1.52488 1.70725 1.30388 1.23374 1.04844 0.96061 1.03003 1.85542 1.88329 1.13263 1.05345 1.23139 1.52559 0.97555 0.96028 0.90082 1.26126 0.94824 1.04107 0.94060 1.70177 1.46955 1.37856 0.99766 0.85025 0.79173 0.76040 0.77908 1.18644 1.20333 1.18583 0.73923 0.92132 0.87391 0.84101 0.94915 0.88426 0.90176 0.94546 0.92083 0.86883 0.90468 0.87139 0.93278 0.89756 0.93046 0.92587 0.90377 0.91508 0.90358 0.92493 0.90397 0.87912 0.88091 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.00 19.25 74.32 1.43 -1.57 16 2 C -0.22 -4.08 13.60 31.12 0.42 -3.66 16 3 C 0.17 2.54 6.16 84.50 0.52 3.06 16 4 N -0.70 -12.37 6.47 -523.74 -3.39 -15.76 16 5 C 0.07 1.10 5.69 86.30 0.49 1.60 16 6 C -0.12 -2.48 5.80 30.60 0.18 -2.30 16 7 C 0.12 2.48 5.09 86.38 0.44 2.92 16 8 N -0.60 -15.62 2.39 -821.79 -1.96 -17.59 16 9 C 0.11 2.17 4.36 86.38 0.38 2.54 16 10 C -0.11 -2.10 3.14 -10.07 -0.03 -2.13 16 11 C -0.12 -1.78 5.23 31.70 0.17 -1.61 16 12 C -0.12 -1.68 6.91 31.91 0.22 -1.46 16 13 C -0.12 -1.48 6.83 31.67 0.22 -1.27 16 14 C -0.12 -1.84 6.46 31.32 0.20 -1.64 16 15 C 0.53 20.30 7.69 87.66 0.67 20.97 16 16 O -0.56 -26.57 15.44 -3.00 -0.05 -26.61 16 17 C -0.12 -5.02 4.71 71.24 0.34 -4.69 16 18 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 19 C -0.55 -31.52 9.50 67.96 0.65 -30.88 16 20 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 21 C 0.01 0.78 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 23 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 H 0.24 1.96 7.80 -4.41 -0.03 1.93 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.34 6.68 8.71 -89.69 -0.78 5.90 16 31 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.60 7.42 -2.38 -0.02 1.58 16 36 H 0.11 1.60 5.65 -2.39 -0.01 1.58 16 37 H 0.08 1.59 6.44 -2.39 -0.02 1.58 16 38 H 0.11 1.48 7.95 -2.39 -0.02 1.46 16 39 H 0.05 1.22 7.35 -2.38 -0.02 1.20 16 40 H 0.08 1.00 6.22 -2.39 -0.01 0.99 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.08 1.05 7.67 -2.39 -0.02 1.03 16 48 H 0.10 3.90 7.40 -2.39 -0.02 3.88 16 49 H 0.10 3.88 7.30 -2.40 -0.02 3.87 16 50 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -77.65 418.62 2.63 -75.02 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.13 Total: 23.89 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 6.75 Total: -18.86 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -5.07 Total: -89.60 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -77.65 2.63 -75.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177218435.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.918 kcal (2) G-P(sol) polarization free energy of solvation -77.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds