Wall clock time and date at job start Tue Mar 31 2020 22:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99949 * 2 1 4 4 C 1.53003 * 109.46981 * 125.27910 * 3 2 1 5 5 C 1.52997 * 109.46942 * 177.77679 * 4 3 2 6 6 H 1.08996 * 109.47261 * 55.46583 * 5 4 3 7 7 C 1.53004 * 109.46679 * 175.46231 * 5 4 3 8 8 N 1.46900 * 109.47243 * 295.46133 * 5 4 3 9 9 C 1.46399 * 110.99892 * 174.96739 * 8 5 4 10 10 C 1.54039 * 108.14222 * 191.55054 * 9 8 5 11 11 C 1.53162 * 108.12920 * 296.12148 * 10 9 8 12 12 H 1.09005 * 114.51221 * 273.24645 * 11 10 9 13 13 C 1.52787 * 111.74743 * 140.56206 * 11 10 9 14 14 N 1.47214 * 87.51367 * 274.44829 * 13 11 10 15 15 C 1.34775 * 136.38156 * 151.47602 * 14 13 11 16 16 O 1.21281 * 119.99894 * 179.97438 * 15 14 13 17 17 C 1.50705 * 119.99676 * 359.97438 * 15 14 13 18 18 S 1.81002 * 109.46706 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99749 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00046 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00018 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00393 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47020 * 59.99892 * 23 21 19 25 25 H 1.48497 * 109.47592 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46895 * 300.00313 * 23 21 19 27 27 C 1.46641 * 87.23810 * 331.46855 * 14 13 11 28 28 H 1.09000 * 111.73090 * 275.94874 * 27 14 13 29 29 C 1.45485 * 110.99856 * 301.69597 * 8 5 4 30 30 H 1.07994 * 119.99880 * 179.72234 * 1 2 3 31 31 H 1.07995 * 119.99403 * 359.72264 * 1 2 3 32 32 H 1.07998 * 120.00126 * 180.27551 * 2 1 3 33 33 H 1.09001 * 109.47129 * 245.27638 * 3 2 1 34 34 H 1.08994 * 109.47372 * 5.27940 * 3 2 1 35 35 H 1.09005 * 109.46947 * 297.77902 * 4 3 2 36 36 H 1.09000 * 109.46993 * 57.77237 * 4 3 2 37 37 H 1.09008 * 109.46568 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.47373 * 299.99390 * 7 5 4 39 39 H 1.09001 * 109.47447 * 60.00166 * 7 5 4 40 40 H 1.09000 * 109.54645 * 310.34232 * 9 8 5 41 41 H 1.08995 * 109.55065 * 70.62961 * 9 8 5 42 42 H 1.08999 * 108.98658 * 177.06773 * 10 9 8 43 43 H 1.09000 * 110.95060 * 56.31693 * 10 9 8 44 44 H 1.08997 * 114.10691 * 159.74017 * 13 11 10 45 45 H 1.09000 * 113.15655 * 29.00703 * 13 11 10 46 46 H 1.08997 * 109.46796 * 300.00063 * 17 15 14 47 47 H 1.08994 * 109.47208 * 60.00046 * 17 15 14 48 48 H 0.96995 * 120.00551 * 179.97438 * 22 21 19 49 49 H 1.08999 * 108.58058 * 306.12793 * 29 8 5 50 50 H 1.09000 * 108.58374 * 63.79961 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0401 1.3302 1.1776 5 6 3.8443 2.6314 1.1456 6 1 3.1611 3.4807 1.1377 7 6 4.7393 2.7083 2.3842 8 7 4.6779 2.6622 -0.0636 9 6 5.3725 3.9448 -0.1894 10 6 5.9847 4.0223 -1.6008 11 6 7.0356 2.9151 -1.7258 12 1 8.0294 3.1931 -1.3747 13 6 7.0041 2.2577 -3.1046 14 7 5.9457 1.3742 -2.5884 15 6 4.8941 0.7071 -3.1037 16 8 4.1867 0.0384 -2.3803 17 6 4.5974 0.7921 -4.5788 18 16 3.1346 -0.2042 -4.9583 19 6 3.0202 0.0695 -6.6951 20 1 3.7417 0.7021 -7.1908 21 6 2.0029 -0.5279 -7.4262 22 7 1.1238 -1.2994 -6.8223 23 14 1.8811 -0.2372 -9.2675 24 1 3.1238 -0.7128 -9.9269 25 1 0.7162 -0.9813 -9.8102 26 1 1.7063 1.2142 -9.5289 27 6 6.5482 1.5449 -1.2625 28 1 7.3758 0.8537 -1.1032 29 6 5.5766 1.5190 -0.1066 30 1 -0.5399 -0.9353 -0.0045 31 1 -0.5399 0.9353 0.0045 32 1 1.8500 -0.9353 -0.0045 33 1 2.6174 1.4049 -0.9335 34 1 1.3591 2.1314 0.0946 35 1 2.4832 1.2701 2.1127 36 1 3.7196 0.4811 1.1043 37 1 5.3119 3.6356 2.3615 38 1 4.1208 2.6855 3.2814 39 1 5.4225 1.8590 2.3921 40 1 4.6592 4.7596 -0.0649 41 1 6.1471 4.0165 0.5740 42 1 6.4613 4.9943 -1.7277 43 1 5.2197 3.8878 -2.3654 44 1 7.9210 1.7303 -3.3675 45 1 6.6635 2.9299 -3.8922 46 1 4.4103 1.8304 -4.8525 47 1 5.4503 0.4156 -5.1433 48 1 0.4126 -1.7165 -7.3332 49 1 6.1440 1.4881 0.8235 50 1 4.9791 0.6099 -0.1755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221289543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:48 Heat of formation + Delta-G solvation = 26.607806 kcal Electronic energy + Delta-G solvation = -28611.100526 eV Core-core repulsion = 24959.356418 eV Total energy + Delta-G solvation = -3651.744108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26548 -38.52379 -37.39169 -34.97107 -32.78464 -32.37943 -30.97295 -30.40926 -28.87692 -27.88461 -26.79275 -25.42285 -24.01757 -23.52536 -22.27512 -20.47549 -19.91693 -19.30397 -17.99714 -17.40476 -16.89432 -16.33008 -15.70683 -15.40295 -14.98342 -14.76185 -14.61417 -14.48666 -14.11724 -13.99990 -13.71163 -13.60529 -13.29180 -13.00211 -12.71804 -12.63745 -12.48334 -12.22257 -12.13764 -11.83390 -11.75765 -11.50348 -11.29037 -11.24603 -11.00698 -10.98599 -10.90352 -10.85337 -10.72065 -10.52174 -10.33640 -10.05626 -9.76639 -9.09038 -9.01196 -8.86222 -8.37981 -8.15890 -8.08476 -6.42391 -6.16566 -3.85939 2.76349 2.89551 3.25352 3.26747 3.28561 3.31686 3.66031 3.76924 4.15984 4.25606 4.57918 4.64160 4.79336 4.89952 5.02826 5.08637 5.09743 5.14813 5.18239 5.23110 5.28449 5.36368 5.39208 5.39706 5.44994 5.53833 5.61879 5.62810 5.65357 5.70368 5.73037 5.79171 5.83303 5.91741 6.01274 6.02711 6.04105 6.13316 6.18605 6.23745 6.25502 6.33805 6.49691 6.74185 7.08887 7.13948 7.25410 7.26498 7.63780 8.08459 8.39736 8.76840 9.28516 10.90651 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.003702 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.212591 B = 7562.540257 C = 9298.974913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.130 4.130 3 C -0.087 4.087 4 C -0.105 4.105 5 C 0.087 3.913 6 H 0.081 0.919 7 C -0.187 4.187 8 N -0.526 5.526 9 C 0.061 3.939 10 C -0.093 4.093 11 C -0.123 4.123 12 H 0.094 0.906 13 C 0.100 3.900 14 N -0.638 5.638 15 C 0.567 3.433 16 O -0.506 6.506 17 C -0.144 4.144 18 S -0.055 6.055 19 C -0.536 4.536 20 H 0.070 0.930 21 C 0.075 3.925 22 N -0.867 5.867 23 Si 0.916 3.084 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.142 3.858 28 H 0.084 0.916 29 C 0.052 3.948 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.035 0.965 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.268 0.732 49 H 0.035 0.965 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.094 11.272 16.855 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.148 4.148 3 C -0.124 4.124 4 C -0.143 4.143 5 C -0.021 4.021 6 H 0.099 0.901 7 C -0.246 4.246 8 N -0.250 5.250 9 C -0.066 4.066 10 C -0.131 4.131 11 C -0.142 4.142 12 H 0.112 0.888 13 C -0.023 4.023 14 N -0.378 5.378 15 C 0.356 3.644 16 O -0.379 6.379 17 C -0.295 4.295 18 S 0.172 5.828 19 C -0.684 4.684 20 H 0.088 0.912 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.743 3.257 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C 0.038 3.962 28 H 0.101 0.899 29 C -0.076 4.076 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.078 0.922 49 H 0.053 0.947 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.359 9.968 17.404 22.574 hybrid contribution 1.406 0.888 -1.532 2.261 sum 11.766 10.856 15.872 22.543 Atomic orbital electron populations 1.23681 0.96045 1.01120 1.04068 1.22951 0.95776 0.98850 0.97259 1.20675 0.97313 0.94199 1.00220 1.21607 0.97737 0.96542 0.98369 1.21713 0.94321 0.99241 0.86818 0.90069 1.22474 1.00971 1.01695 0.99423 1.60712 1.24726 1.01626 1.37978 1.22072 0.96863 0.91682 0.96016 1.21583 0.97363 0.96490 0.97656 1.22761 0.99563 0.94972 0.96939 0.88792 1.22924 0.90869 0.91478 0.97072 1.49591 1.27403 1.50824 1.09953 1.19720 0.78258 0.77102 0.89308 1.90675 1.47244 1.39067 1.60940 1.23463 1.06192 1.05784 0.94013 1.85359 1.28243 1.60701 1.08500 1.22837 1.16922 1.35466 0.93197 0.91165 1.24961 0.94712 0.94557 0.99220 1.70008 1.14602 1.29365 1.36303 0.86265 0.77773 0.78494 0.83208 1.19992 1.20827 1.19962 1.21964 0.93884 0.95102 0.85277 0.89863 1.21478 0.94563 0.96000 0.95544 0.89100 0.89200 0.87778 0.88272 0.92779 0.92234 0.91698 0.92705 0.92168 0.92339 0.90928 0.94731 0.91404 0.90129 0.90164 0.90391 0.89759 0.89915 0.92202 0.94712 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.22 14.32 29.01 0.42 -2.80 16 2 C -0.13 -2.09 9.52 -36.02 -0.34 -2.43 16 3 C -0.09 -1.30 5.57 -27.88 -0.16 -1.46 16 4 C -0.10 -1.26 4.37 -26.73 -0.12 -1.37 16 5 C 0.09 0.91 2.35 -67.71 -0.16 0.75 16 6 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 7 C -0.19 -1.58 8.58 37.16 0.32 -1.26 16 8 N -0.53 -6.01 3.91 -228.82 -0.90 -6.91 16 9 C 0.06 0.57 4.94 -3.55 -0.02 0.55 16 10 C -0.09 -0.85 5.77 -26.11 -0.15 -1.00 16 11 C -0.12 -1.07 4.54 -90.84 -0.41 -1.48 16 12 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 13 C 0.10 1.02 7.76 -11.07 -0.09 0.94 16 14 N -0.64 -9.12 3.32 -187.42 -0.62 -9.74 16 15 C 0.57 10.91 8.02 -10.98 -0.09 10.82 16 16 O -0.51 -11.21 14.47 5.56 0.08 -11.13 16 17 C -0.14 -3.04 6.00 36.01 0.22 -2.83 16 18 S -0.05 -1.51 20.57 -107.50 -2.21 -3.72 16 19 C -0.54 -15.53 9.50 30.94 0.29 -15.24 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.16 5.49 -17.43 -0.10 2.07 16 22 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 23 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.14 1.60 4.15 -76.35 -0.32 1.28 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 C 0.05 0.62 4.35 -5.58 -0.02 0.59 16 30 H 0.09 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.09 1.27 7.84 -52.49 -0.41 0.85 16 32 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 1.84 6.89 -51.93 -0.36 1.48 16 34 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.84 6.21 -51.93 -0.32 0.52 16 37 H 0.05 0.43 6.77 -51.92 -0.35 0.08 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.51 6.30 -51.93 -0.33 0.18 16 40 H 0.07 0.65 7.99 -51.93 -0.41 0.23 16 41 H 0.03 0.29 6.99 -51.93 -0.36 -0.08 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.96 7.67 -51.93 -0.40 0.57 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.79 8.00 -51.93 -0.42 0.37 16 46 H 0.08 1.70 8.14 -51.92 -0.42 1.28 16 47 H 0.08 1.66 8.14 -51.92 -0.42 1.24 16 48 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 49 H 0.03 0.36 5.95 -51.93 -0.31 0.05 16 50 H 0.10 1.49 5.16 -51.93 -0.27 1.22 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -33.32 400.55 -11.16 -44.47 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.53 Total: 2.91 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -0.72 Total: -12.87 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.78 Total: -42.40 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.32 -11.16 -44.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221289543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.082 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds