Wall clock time and date at job start Tue Mar 31 2020 22:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50705 * 119.99949 * 2 1 4 4 C 1.53003 * 109.46981 * 125.27910 * 3 2 1 5 5 C 1.52997 * 109.46942 * 177.77679 * 4 3 2 6 6 H 1.08996 * 109.47261 * 55.46583 * 5 4 3 7 7 C 1.53004 * 109.46679 * 175.46231 * 5 4 3 8 8 N 1.46900 * 109.47243 * 295.46133 * 5 4 3 9 9 C 1.46399 * 110.99892 * 174.96739 * 8 5 4 10 10 C 1.54039 * 108.14222 * 191.55054 * 9 8 5 11 11 C 1.53162 * 108.12920 * 296.12148 * 10 9 8 12 12 H 1.09005 * 114.51221 * 273.24645 * 11 10 9 13 13 C 1.52787 * 111.74743 * 140.56206 * 11 10 9 14 14 N 1.47214 * 87.51367 * 274.44829 * 13 11 10 15 15 C 1.34775 * 136.38156 * 151.47602 * 14 13 11 16 16 O 1.21281 * 119.99894 * 179.97438 * 15 14 13 17 17 C 1.50705 * 119.99676 * 359.97438 * 15 14 13 18 18 S 1.81002 * 109.46706 * 180.02562 * 17 15 14 19 19 C 1.76200 * 99.99749 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00046 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00018 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00393 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47020 * 59.99892 * 23 21 19 25 25 H 1.48497 * 109.47592 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46895 * 300.00313 * 23 21 19 27 27 C 1.46641 * 87.23810 * 331.46855 * 14 13 11 28 28 H 1.09000 * 111.73090 * 275.94874 * 27 14 13 29 29 C 1.45485 * 110.99856 * 301.69597 * 8 5 4 30 30 H 1.07994 * 119.99880 * 179.72234 * 1 2 3 31 31 H 1.07995 * 119.99403 * 359.72264 * 1 2 3 32 32 H 1.07998 * 120.00126 * 180.27551 * 2 1 3 33 33 H 1.09001 * 109.47129 * 245.27638 * 3 2 1 34 34 H 1.08994 * 109.47372 * 5.27940 * 3 2 1 35 35 H 1.09005 * 109.46947 * 297.77902 * 4 3 2 36 36 H 1.09000 * 109.46993 * 57.77237 * 4 3 2 37 37 H 1.09008 * 109.46568 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.47373 * 299.99390 * 7 5 4 39 39 H 1.09001 * 109.47447 * 60.00166 * 7 5 4 40 40 H 1.09000 * 109.54645 * 310.34232 * 9 8 5 41 41 H 1.08995 * 109.55065 * 70.62961 * 9 8 5 42 42 H 1.08999 * 108.98658 * 177.06773 * 10 9 8 43 43 H 1.09000 * 110.95060 * 56.31693 * 10 9 8 44 44 H 1.08997 * 114.10691 * 159.74017 * 13 11 10 45 45 H 1.09000 * 113.15655 * 29.00703 * 13 11 10 46 46 H 1.08997 * 109.46796 * 300.00063 * 17 15 14 47 47 H 1.08994 * 109.47208 * 60.00046 * 17 15 14 48 48 H 0.96995 * 120.00551 * 179.97438 * 22 21 19 49 49 H 1.08999 * 108.58058 * 306.12793 * 29 8 5 50 50 H 1.09000 * 108.58374 * 63.79961 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0401 1.3302 1.1776 5 6 3.8443 2.6314 1.1456 6 1 3.1611 3.4807 1.1377 7 6 4.7393 2.7083 2.3842 8 7 4.6779 2.6622 -0.0636 9 6 5.3725 3.9448 -0.1894 10 6 5.9847 4.0223 -1.6008 11 6 7.0356 2.9151 -1.7258 12 1 8.0294 3.1931 -1.3747 13 6 7.0041 2.2577 -3.1046 14 7 5.9457 1.3742 -2.5884 15 6 4.8941 0.7071 -3.1037 16 8 4.1867 0.0384 -2.3803 17 6 4.5974 0.7921 -4.5788 18 16 3.1346 -0.2042 -4.9583 19 6 3.0202 0.0695 -6.6951 20 1 3.7417 0.7021 -7.1908 21 6 2.0029 -0.5279 -7.4262 22 7 1.1238 -1.2994 -6.8223 23 14 1.8811 -0.2372 -9.2675 24 1 3.1238 -0.7128 -9.9269 25 1 0.7162 -0.9813 -9.8102 26 1 1.7063 1.2142 -9.5289 27 6 6.5482 1.5449 -1.2625 28 1 7.3758 0.8537 -1.1032 29 6 5.5766 1.5190 -0.1066 30 1 -0.5399 -0.9353 -0.0045 31 1 -0.5399 0.9353 0.0045 32 1 1.8500 -0.9353 -0.0045 33 1 2.6174 1.4049 -0.9335 34 1 1.3591 2.1314 0.0946 35 1 2.4832 1.2701 2.1127 36 1 3.7196 0.4811 1.1043 37 1 5.3119 3.6356 2.3615 38 1 4.1208 2.6855 3.2814 39 1 5.4225 1.8590 2.3921 40 1 4.6592 4.7596 -0.0649 41 1 6.1471 4.0165 0.5740 42 1 6.4613 4.9943 -1.7277 43 1 5.2197 3.8878 -2.3654 44 1 7.9210 1.7303 -3.3675 45 1 6.6635 2.9299 -3.8922 46 1 4.4103 1.8304 -4.8525 47 1 5.4503 0.4156 -5.1433 48 1 0.4126 -1.7165 -7.3332 49 1 6.1440 1.4881 0.8235 50 1 4.9791 0.6099 -0.1755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221289543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:47 Heat of formation + Delta-G solvation = 6.100415 kcal Electronic energy + Delta-G solvation = -28611.989793 eV Core-core repulsion = 24959.356418 eV Total energy + Delta-G solvation = -3652.633375 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21084 -39.60786 -38.65303 -36.12158 -34.59187 -33.74843 -31.86387 -31.78290 -29.92957 -29.12898 -27.72233 -27.58135 -24.99087 -24.45248 -23.17557 -21.54105 -20.89549 -20.54780 -19.81514 -18.64969 -17.77841 -17.62555 -16.93215 -16.87378 -16.58343 -16.07419 -15.88273 -15.71311 -15.37792 -15.15557 -14.87203 -14.67457 -14.56485 -14.12803 -14.02429 -13.65333 -13.55138 -13.46989 -13.17803 -13.09189 -13.01362 -12.87623 -12.67090 -12.58147 -12.51107 -12.20014 -12.09688 -11.91031 -11.73620 -11.65632 -11.49045 -11.41438 -11.13607 -10.96793 -10.50256 -10.25871 -10.13193 -9.52110 -8.88574 -8.64757 -8.34641 -6.12101 1.24764 1.41990 1.44007 1.47108 1.53981 1.79725 2.10483 2.28068 2.96991 2.98786 3.26429 3.36350 3.70328 3.77256 3.86154 4.05525 4.10717 4.18596 4.21920 4.26017 4.28035 4.39615 4.42233 4.46779 4.54203 4.56474 4.57139 4.59478 4.65394 4.73933 4.78066 4.85468 4.90274 4.93305 4.97483 5.02357 5.05911 5.14553 5.20649 5.27326 5.28548 5.39573 5.42750 5.48278 5.53325 5.80470 5.97289 6.18400 6.33793 6.46646 6.84786 7.05944 7.35171 8.74175 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.003702 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.212591 B = 7562.540257 C = 9298.974913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.077 4.077 4 C -0.096 4.096 5 C 0.090 3.910 6 H 0.082 0.918 7 C -0.176 4.176 8 N -0.550 5.550 9 C 0.063 3.937 10 C -0.094 4.094 11 C -0.098 4.098 12 H 0.138 0.862 13 C 0.095 3.905 14 N -0.640 5.640 15 C 0.562 3.438 16 O -0.548 6.548 17 C -0.117 4.117 18 S -0.138 6.138 19 C -0.551 4.551 20 H 0.077 0.923 21 C 0.016 3.984 22 N -0.910 5.910 23 Si 0.996 3.004 24 H -0.262 1.262 25 H -0.277 1.277 26 H -0.262 1.262 27 C 0.132 3.868 28 H 0.102 0.898 29 C 0.058 3.942 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.045 0.955 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.271 0.729 49 H 0.054 0.946 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.735 13.834 17.121 26.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.168 4.168 3 C -0.114 4.114 4 C -0.134 4.134 5 C -0.018 4.018 6 H 0.101 0.899 7 C -0.235 4.235 8 N -0.274 5.274 9 C -0.064 4.064 10 C -0.132 4.132 11 C -0.117 4.117 12 H 0.155 0.845 13 C -0.027 4.027 14 N -0.377 5.377 15 C 0.350 3.650 16 O -0.425 6.425 17 C -0.269 4.269 18 S 0.089 5.911 19 C -0.698 4.698 20 H 0.096 0.904 21 C -0.189 4.189 22 N -0.547 5.547 23 Si 0.818 3.182 24 H -0.186 1.186 25 H -0.202 1.202 26 H -0.187 1.187 27 C 0.029 3.971 28 H 0.120 0.880 29 C -0.070 4.070 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.124 0.876 45 H 0.097 0.903 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.062 12.572 17.688 25.329 hybrid contribution 0.638 0.131 -1.535 1.667 sum 13.700 12.703 16.153 24.698 Atomic orbital electron populations 1.23871 0.95764 1.02087 1.02755 1.23035 0.96361 0.98896 0.98547 1.20531 0.97482 0.93652 0.99764 1.21535 0.97116 0.97338 0.97428 1.21666 0.94531 0.97896 0.87746 0.89949 1.22360 1.00599 1.02160 0.98376 1.60644 1.25421 1.02498 1.38868 1.22131 0.97333 0.90404 0.96576 1.21598 0.96826 0.98199 0.96567 1.22733 1.01103 0.92894 0.94941 0.84462 1.23314 0.90159 0.90958 0.98290 1.49585 1.26536 1.49256 1.12355 1.19310 0.79727 0.77765 0.88161 1.90664 1.49265 1.41271 1.61317 1.23246 1.02898 1.04415 0.96313 1.85507 1.33023 1.63206 1.09368 1.23171 1.17483 1.35796 0.93390 0.90436 1.26096 0.93960 0.93866 1.04967 1.70178 1.15385 1.30503 1.38585 0.85042 0.78276 0.78927 0.75986 1.18633 1.20178 1.18695 1.22391 0.93787 0.97501 0.83455 0.88000 1.21319 0.94248 0.94702 0.96733 0.88430 0.87903 0.89375 0.92091 0.92252 0.90870 0.93146 0.91346 0.91343 0.92672 0.90744 0.92649 0.88551 0.93585 0.87568 0.90287 0.89065 0.88796 0.91997 0.92814 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.57 14.32 67.78 0.97 -5.60 16 2 C -0.15 -5.18 9.52 25.64 0.24 -4.94 16 3 C -0.08 -2.47 5.57 29.85 0.17 -2.30 16 4 C -0.10 -2.39 4.37 30.59 0.13 -2.26 16 5 C 0.09 1.80 2.35 44.92 0.11 1.90 16 6 H 0.08 1.63 8.02 -2.39 -0.02 1.61 16 7 C -0.18 -2.57 8.58 71.98 0.62 -1.95 16 8 N -0.55 -12.17 3.91 -877.87 -3.44 -15.60 16 9 C 0.06 1.00 4.94 86.75 0.43 1.43 16 10 C -0.09 -1.46 5.77 31.00 0.18 -1.28 16 11 C -0.10 -1.31 4.54 -10.93 -0.05 -1.36 16 12 H 0.14 0.86 8.14 -2.38 -0.02 0.84 16 13 C 0.09 1.66 7.76 81.44 0.63 2.29 16 14 N -0.64 -17.88 3.32 -865.25 -2.87 -20.75 16 15 C 0.56 22.44 8.02 87.66 0.70 23.14 16 16 O -0.55 -26.02 14.47 -3.03 -0.04 -26.07 16 17 C -0.12 -5.11 6.00 71.24 0.43 -4.69 16 18 S -0.14 -8.01 20.57 -56.49 -1.16 -9.17 16 19 C -0.55 -32.67 9.50 67.95 0.65 -32.02 16 20 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 21 C 0.02 0.94 5.49 84.86 0.47 1.40 16 22 N -0.91 -57.28 13.22 21.65 0.29 -56.99 16 23 Si 1.00 44.72 29.55 68.60 2.03 46.75 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 26 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 27 C 0.13 2.70 4.15 39.46 0.16 2.86 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 C 0.06 1.34 4.35 85.93 0.37 1.71 16 30 H 0.10 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.10 2.94 7.84 -2.91 -0.02 2.92 16 32 H 0.09 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.06 2.46 6.89 -2.39 -0.02 2.45 16 34 H 0.06 1.77 7.79 -2.39 -0.02 1.75 16 35 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.05 1.40 6.21 -2.39 -0.01 1.38 16 37 H 0.07 0.83 6.77 -2.38 -0.02 0.81 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 0.85 6.30 -2.39 -0.02 0.83 16 40 H 0.07 1.16 7.99 -2.39 -0.02 1.14 16 41 H 0.06 0.68 6.99 -2.39 -0.02 0.66 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.05 1.05 7.67 -2.39 -0.02 1.03 16 44 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.40 8.00 -2.39 -0.02 1.38 16 46 H 0.09 3.77 8.14 -2.40 -0.02 3.76 16 47 H 0.09 3.81 8.14 -2.40 -0.02 3.79 16 48 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 49 H 0.05 1.00 5.95 -2.39 -0.01 0.99 16 50 H 0.06 1.88 5.16 -2.39 -0.01 1.86 16 Total: -1.00 -78.46 400.55 1.91 -76.55 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.90 Total: 26.93 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 6.21 Total: -21.66 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -6.02 Total: -93.34 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.04 Total: -26.07 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -78.46 1.91 -76.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221289543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.653 kcal (2) G-P(sol) polarization free energy of solvation -78.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds