Wall clock time and date at job start Tue Mar 31 2020 22:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00057 * 2 1 4 4 C 1.53005 * 109.46948 * 124.99632 * 3 2 1 5 5 C 1.53006 * 109.46991 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.46884 * 305.00622 * 5 4 3 7 7 C 1.52997 * 109.47127 * 184.99870 * 5 4 3 8 8 N 1.46902 * 109.46626 * 65.00206 * 5 4 3 9 9 C 1.46483 * 111.00374 * 66.04529 * 8 5 4 10 10 C 1.51625 * 111.12911 * 189.64916 * 9 8 5 11 11 C 1.51688 * 113.71171 * 312.96847 * 10 9 8 12 12 H 1.09001 * 112.64027 * 254.32699 * 11 10 9 13 13 C 1.54558 * 111.76681 * 125.34363 * 11 10 9 14 14 N 1.47742 * 85.84431 * 267.67978 * 13 11 10 15 15 C 1.34779 * 134.92904 * 154.14260 * 14 13 11 16 16 O 1.21279 * 120.00282 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.99750 * 359.97438 * 15 14 13 18 18 S 1.81000 * 109.46768 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99717 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00467 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00121 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99454 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00001 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47311 * 60.00273 * 23 21 19 25 25 H 1.48504 * 109.46798 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47237 * 300.00028 * 23 21 19 27 27 C 1.46952 * 90.14709 * 334.11797 * 14 13 11 28 28 H 1.09007 * 112.92803 * 272.61081 * 27 14 13 29 29 C 1.46930 * 110.99699 * 188.92730 * 8 5 4 30 30 H 1.08003 * 119.99629 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00522 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99629 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47260 * 4.99885 * 3 2 1 34 34 H 1.09006 * 109.46946 * 244.99283 * 3 2 1 35 35 H 1.08996 * 109.46933 * 60.00053 * 4 3 2 36 36 H 1.09000 * 109.47335 * 299.99925 * 4 3 2 37 37 H 1.09002 * 109.47153 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.46832 * 60.00321 * 7 5 4 39 39 H 1.09004 * 109.47261 * 300.00303 * 7 5 4 40 40 H 1.08999 * 109.14894 * 310.07445 * 9 8 5 41 41 H 1.08997 * 109.14438 * 69.22328 * 9 8 5 42 42 H 1.08996 * 108.63823 * 74.06130 * 10 9 8 43 43 H 1.09003 * 108.63710 * 192.01430 * 10 9 8 44 44 H 1.09006 * 113.80948 * 21.90487 * 13 11 10 45 45 H 1.08995 * 113.81444 * 153.44699 * 13 11 10 46 46 H 1.09000 * 109.47159 * 300.00301 * 17 15 14 47 47 H 1.08997 * 109.46796 * 60.00495 * 17 15 14 48 48 H 0.97008 * 119.99714 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.43712 * 292.23069 * 29 8 5 50 50 H 1.09004 * 109.43818 * 52.11570 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.8005 2.6578 1.1814 6 1 4.2865 2.7963 0.2156 7 6 4.8584 2.6359 2.2865 8 7 2.8644 3.7642 1.4215 9 6 2.2980 3.6893 2.7703 10 6 1.1637 4.6807 2.9426 11 6 1.4883 6.0731 2.4361 12 1 1.6718 6.7813 3.2441 13 6 0.4419 6.5691 1.4124 14 7 1.3383 6.0029 0.3835 15 6 1.1717 5.5261 -0.8661 16 8 2.1264 5.1142 -1.4903 17 6 -0.2011 5.5048 -1.4875 18 16 -0.0969 4.8124 -3.1566 19 6 -1.7910 4.9048 -3.6323 20 1 -2.5234 5.3047 -2.9468 21 6 -2.1842 4.4636 -4.8883 22 7 -1.2915 3.9767 -5.7240 23 14 -3.9803 4.5609 -5.3924 24 1 -4.4298 5.9757 -5.3522 25 1 -4.1371 4.0301 -6.7704 26 1 -4.8019 3.7536 -4.4550 27 6 2.4868 6.1746 1.2841 28 1 2.9449 7.1606 1.2048 29 6 3.5212 5.0629 1.2193 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6214 1.4025 -0.9314 35 1 3.7399 0.5065 1.0922 36 1 2.4772 1.2356 2.1131 37 1 5.4034 3.5798 2.2865 38 1 5.5529 1.8149 2.1083 39 1 4.3722 2.4974 3.2522 40 1 1.9215 2.6814 2.9446 41 1 3.0787 3.9091 3.4986 42 1 0.2916 4.3090 2.4048 43 1 0.9165 4.7464 4.0022 44 1 -0.5200 6.0616 1.4855 45 1 0.3503 7.6542 1.3674 46 1 -0.8654 4.8900 -0.8802 47 1 -0.5923 6.5209 -1.5391 48 1 -1.5663 3.6680 -6.6017 49 1 4.2684 5.2166 1.9978 50 1 4.0069 5.0757 0.2435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221289544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:52 Heat of formation + Delta-G solvation = 21.498345 kcal Electronic energy + Delta-G solvation = -28721.727567 eV Core-core repulsion = 25069.761896 eV Total energy + Delta-G solvation = -3651.965671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.03972 -38.46024 -37.23419 -35.01242 -32.72166 -32.36530 -31.43230 -30.21241 -28.79844 -27.80726 -26.73963 -25.40751 -23.85503 -23.81823 -22.33569 -20.54560 -19.55679 -19.40438 -17.92177 -17.48355 -16.69930 -16.17064 -16.00221 -15.46392 -14.96619 -14.75273 -14.60933 -14.46328 -14.07830 -13.92783 -13.80340 -13.46605 -13.21055 -13.00409 -12.72628 -12.57874 -12.51988 -12.36696 -12.20413 -11.79625 -11.75874 -11.48605 -11.33452 -11.26031 -10.99660 -10.97099 -10.82726 -10.71512 -10.63065 -10.55733 -10.34767 -10.25323 -9.74637 -9.02052 -9.01282 -8.99795 -8.31042 -8.13972 -8.12619 -6.40470 -6.15285 -3.84150 2.58253 2.93558 3.26890 3.28734 3.32300 3.35780 3.67674 3.82220 4.18735 4.27219 4.58094 4.66893 4.82231 4.95494 5.04253 5.06930 5.14346 5.17933 5.19607 5.25254 5.29237 5.34299 5.38937 5.41036 5.45627 5.50202 5.56920 5.63628 5.67970 5.71142 5.74738 5.77758 5.83578 5.94934 5.95934 6.03408 6.09551 6.13556 6.18983 6.20836 6.26434 6.33017 6.38712 6.63883 6.94447 7.11230 7.16486 7.19676 7.65200 8.13941 8.41224 8.85405 9.29929 10.92025 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011603 B = 0.003796 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.595289 B = 7374.429830 C = 8626.733843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.086 4.086 4 C -0.101 4.101 5 C 0.082 3.918 6 H 0.085 0.915 7 C -0.185 4.185 8 N -0.507 5.507 9 C 0.053 3.947 10 C -0.094 4.094 11 C -0.116 4.116 12 H 0.085 0.915 13 C 0.102 3.898 14 N -0.630 5.630 15 C 0.565 3.435 16 O -0.511 6.511 17 C -0.143 4.143 18 S -0.057 6.057 19 C -0.534 4.534 20 H 0.070 0.930 21 C 0.075 3.925 22 N -0.868 5.868 23 Si 0.916 3.084 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.147 3.853 28 H 0.086 0.914 29 C 0.053 3.947 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.030 0.970 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.268 0.732 49 H 0.041 0.959 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.440 0.065 21.994 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.173 4.173 3 C -0.123 4.123 4 C -0.139 4.139 5 C -0.026 4.026 6 H 0.104 0.896 7 C -0.244 4.244 8 N -0.230 5.230 9 C -0.075 4.075 10 C -0.132 4.132 11 C -0.135 4.135 12 H 0.104 0.896 13 C -0.022 4.022 14 N -0.369 5.369 15 C 0.354 3.646 16 O -0.385 6.385 17 C -0.294 4.294 18 S 0.170 5.830 19 C -0.683 4.683 20 H 0.088 0.912 21 C -0.134 4.134 22 N -0.503 5.503 23 Si 0.742 3.258 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C 0.043 3.957 28 H 0.103 0.897 29 C -0.075 4.075 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.078 0.922 49 H 0.059 0.941 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.462 -0.763 20.292 22.403 hybrid contribution -1.737 0.703 0.909 2.083 sum 7.725 -0.059 21.202 22.565 Atomic orbital electron populations 1.23853 0.96118 1.01663 1.01307 1.22974 0.96056 0.98405 0.99858 1.20637 0.98531 0.95218 0.97895 1.21573 0.97864 0.95414 0.99003 1.21760 0.91105 0.91209 0.98572 0.89638 1.22485 0.99901 1.01927 1.00063 1.62074 1.33590 1.01365 1.25990 1.21744 0.96360 0.99717 0.89660 1.20789 0.99279 0.92770 1.00351 1.22611 0.96648 0.98004 0.96218 0.89642 1.23459 0.95391 0.98538 0.84780 1.49723 1.10001 1.63537 1.13653 1.19713 0.90573 0.76135 0.78140 1.90662 1.42191 1.45782 1.59826 1.23452 0.96220 1.04724 1.04997 1.85342 1.12073 1.80660 1.04907 1.22833 0.93531 1.48565 1.03348 0.91205 1.24958 0.98486 0.94613 0.95386 1.70012 1.33623 1.39090 1.07608 0.86275 0.83254 0.78560 0.77715 1.19996 1.20837 1.19969 1.22084 0.89397 0.97773 0.86474 0.89653 1.21965 0.94653 0.88912 1.02002 0.88328 0.89186 0.88317 0.89996 0.91096 0.92077 0.92162 0.92749 0.92211 0.92473 0.90473 0.95236 0.91080 0.91655 0.90124 0.90251 0.89849 0.90047 0.92233 0.94109 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 14.32 29.01 0.42 -2.29 16 2 C -0.15 -2.11 9.52 -36.03 -0.34 -2.45 16 3 C -0.09 -1.23 5.54 -27.88 -0.15 -1.39 16 4 C -0.10 -1.13 4.60 -26.73 -0.12 -1.26 16 5 C 0.08 0.92 2.32 -67.71 -0.16 0.77 16 6 H 0.09 1.13 7.98 -51.93 -0.41 0.72 16 7 C -0.18 -1.64 8.42 37.16 0.31 -1.33 16 8 N -0.51 -6.05 3.98 -228.48 -0.91 -6.96 16 9 C 0.05 0.52 4.41 -4.75 -0.02 0.50 16 10 C -0.09 -0.85 5.75 -28.09 -0.16 -1.01 16 11 C -0.12 -1.02 4.39 -90.64 -0.40 -1.42 16 12 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 13 C 0.10 1.06 8.04 -2.93 -0.02 1.04 16 14 N -0.63 -9.16 3.30 -172.92 -0.57 -9.73 16 15 C 0.57 11.10 7.99 -10.98 -0.09 11.01 16 16 O -0.51 -11.76 15.60 5.56 0.09 -11.67 16 17 C -0.14 -3.07 5.93 36.01 0.21 -2.85 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 19 C -0.53 -15.53 9.50 30.94 0.29 -15.24 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.17 5.49 -17.43 -0.10 2.07 16 22 N -0.87 -26.56 13.22 55.49 0.73 -25.82 16 23 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.15 1.68 4.43 -68.69 -0.30 1.37 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 C 0.05 0.63 4.45 -4.32 -0.02 0.61 16 30 H 0.10 1.51 7.84 -52.48 -0.41 1.10 16 31 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.10 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.08 1.40 7.40 -51.93 -0.38 1.01 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.65 6.16 -51.93 -0.32 0.33 16 37 H 0.05 0.48 6.82 -51.93 -0.35 0.12 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 40 H 0.08 0.77 5.97 -51.93 -0.31 0.46 16 41 H 0.03 0.26 6.65 -51.93 -0.35 -0.08 16 42 H 0.07 0.77 7.36 -51.93 -0.38 0.39 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 1.71 8.14 -51.92 -0.42 1.28 16 47 H 0.08 1.66 8.14 -51.92 -0.42 1.23 16 48 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.04 0.40 6.83 -51.93 -0.35 0.05 16 50 H 0.09 1.30 7.45 -51.93 -0.39 0.91 16 LS Contribution 402.84 15.07 6.07 6.07 Total: -1.00 -33.82 402.84 -11.07 -44.90 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.60 Total: 2.12 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -0.65 Total: -11.87 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.75 Total: -42.51 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.82 -11.07 -44.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221289544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.395 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds