Wall clock time and date at job start Tue Mar 31 2020 22:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00057 * 2 1 4 4 C 1.53005 * 109.46948 * 124.99632 * 3 2 1 5 5 C 1.53006 * 109.46991 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.46884 * 305.00622 * 5 4 3 7 7 C 1.52997 * 109.47127 * 184.99870 * 5 4 3 8 8 N 1.46902 * 109.46626 * 65.00206 * 5 4 3 9 9 C 1.46483 * 111.00374 * 66.04529 * 8 5 4 10 10 C 1.51625 * 111.12911 * 189.64916 * 9 8 5 11 11 C 1.51688 * 113.71171 * 312.96847 * 10 9 8 12 12 H 1.09001 * 112.64027 * 254.32699 * 11 10 9 13 13 C 1.54558 * 111.76681 * 125.34363 * 11 10 9 14 14 N 1.47742 * 85.84431 * 267.67978 * 13 11 10 15 15 C 1.34779 * 134.92904 * 154.14260 * 14 13 11 16 16 O 1.21279 * 120.00282 * 179.97438 * 15 14 13 17 17 C 1.50702 * 119.99750 * 359.97438 * 15 14 13 18 18 S 1.81000 * 109.46768 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99717 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00467 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00121 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99454 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00001 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47311 * 60.00273 * 23 21 19 25 25 H 1.48504 * 109.46798 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47237 * 300.00028 * 23 21 19 27 27 C 1.46952 * 90.14709 * 334.11797 * 14 13 11 28 28 H 1.09007 * 112.92803 * 272.61081 * 27 14 13 29 29 C 1.46930 * 110.99699 * 188.92730 * 8 5 4 30 30 H 1.08003 * 119.99629 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00522 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99629 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47260 * 4.99885 * 3 2 1 34 34 H 1.09006 * 109.46946 * 244.99283 * 3 2 1 35 35 H 1.08996 * 109.46933 * 60.00053 * 4 3 2 36 36 H 1.09000 * 109.47335 * 299.99925 * 4 3 2 37 37 H 1.09002 * 109.47153 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.46832 * 60.00321 * 7 5 4 39 39 H 1.09004 * 109.47261 * 300.00303 * 7 5 4 40 40 H 1.08999 * 109.14894 * 310.07445 * 9 8 5 41 41 H 1.08997 * 109.14438 * 69.22328 * 9 8 5 42 42 H 1.08996 * 108.63823 * 74.06130 * 10 9 8 43 43 H 1.09003 * 108.63710 * 192.01430 * 10 9 8 44 44 H 1.09006 * 113.80948 * 21.90487 * 13 11 10 45 45 H 1.08995 * 113.81444 * 153.44699 * 13 11 10 46 46 H 1.09000 * 109.47159 * 300.00301 * 17 15 14 47 47 H 1.08997 * 109.46796 * 60.00495 * 17 15 14 48 48 H 0.97008 * 119.99714 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.43712 * 292.23069 * 29 8 5 50 50 H 1.09004 * 109.43818 * 52.11570 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.8005 2.6578 1.1814 6 1 4.2865 2.7963 0.2156 7 6 4.8584 2.6359 2.2865 8 7 2.8644 3.7642 1.4215 9 6 2.2980 3.6893 2.7703 10 6 1.1637 4.6807 2.9426 11 6 1.4883 6.0731 2.4361 12 1 1.6718 6.7813 3.2441 13 6 0.4419 6.5691 1.4124 14 7 1.3383 6.0029 0.3835 15 6 1.1717 5.5261 -0.8661 16 8 2.1264 5.1142 -1.4903 17 6 -0.2011 5.5048 -1.4875 18 16 -0.0969 4.8124 -3.1566 19 6 -1.7910 4.9048 -3.6323 20 1 -2.5234 5.3047 -2.9468 21 6 -2.1842 4.4636 -4.8883 22 7 -1.2915 3.9767 -5.7240 23 14 -3.9803 4.5609 -5.3924 24 1 -4.4298 5.9757 -5.3522 25 1 -4.1371 4.0301 -6.7704 26 1 -4.8019 3.7536 -4.4550 27 6 2.4868 6.1746 1.2841 28 1 2.9449 7.1606 1.2048 29 6 3.5212 5.0629 1.2193 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6214 1.4025 -0.9314 35 1 3.7399 0.5065 1.0922 36 1 2.4772 1.2356 2.1131 37 1 5.4034 3.5798 2.2865 38 1 5.5529 1.8149 2.1083 39 1 4.3722 2.4974 3.2522 40 1 1.9215 2.6814 2.9446 41 1 3.0787 3.9091 3.4986 42 1 0.2916 4.3090 2.4048 43 1 0.9165 4.7464 4.0022 44 1 -0.5200 6.0616 1.4855 45 1 0.3503 7.6542 1.3674 46 1 -0.8654 4.8900 -0.8802 47 1 -0.5923 6.5209 -1.5391 48 1 -1.5663 3.6680 -6.6017 49 1 4.2684 5.2166 1.9978 50 1 4.0069 5.0757 0.2435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221289544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:51 Heat of formation + Delta-G solvation = 0.438287 kcal Electronic energy + Delta-G solvation = -28722.640800 eV Core-core repulsion = 25069.761896 eV Total energy + Delta-G solvation = -3652.878904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01582 -39.60986 -38.51883 -36.11631 -34.59229 -33.68791 -32.33063 -31.65649 -29.76272 -29.12616 -27.68747 -27.58462 -24.84644 -24.75298 -23.25044 -21.63986 -20.66418 -20.51188 -19.73687 -18.65511 -17.85983 -17.34175 -16.99090 -16.89789 -16.80239 -16.09086 -15.93275 -15.67157 -15.40258 -15.02181 -14.90385 -14.69324 -14.54074 -14.06332 -13.99363 -13.81571 -13.48982 -13.46873 -13.18694 -13.16856 -13.14348 -12.88033 -12.65629 -12.64237 -12.40677 -12.25377 -12.18559 -11.83960 -11.73318 -11.68313 -11.40042 -11.26349 -11.18486 -11.13645 -10.48983 -10.26175 -10.17377 -9.48355 -8.97119 -8.65061 -8.34683 -6.12095 1.25129 1.41807 1.43240 1.44156 1.54224 1.83761 2.10814 2.28113 2.98113 2.98851 3.26522 3.35978 3.67816 3.75026 3.89480 4.05323 4.07535 4.16096 4.21976 4.27331 4.34066 4.40142 4.42735 4.45780 4.50413 4.53020 4.55431 4.59528 4.62274 4.70285 4.75952 4.84511 4.88948 4.95228 4.96177 5.05561 5.06741 5.14292 5.18269 5.24389 5.28899 5.36157 5.39505 5.45421 5.50796 5.76029 5.97895 6.18494 6.28822 6.38574 6.85610 7.05911 7.38631 8.74346 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011603 B = 0.003796 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.595289 B = 7374.429830 C = 8626.733843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.080 4.080 4 C -0.090 4.090 5 C 0.082 3.918 6 H 0.052 0.948 7 C -0.173 4.173 8 N -0.532 5.532 9 C 0.053 3.947 10 C -0.096 4.096 11 C -0.092 4.092 12 H 0.129 0.871 13 C 0.096 3.904 14 N -0.631 5.631 15 C 0.562 3.438 16 O -0.559 6.559 17 C -0.117 4.117 18 S -0.141 6.141 19 C -0.549 4.549 20 H 0.077 0.923 21 C 0.016 3.984 22 N -0.911 5.911 23 Si 0.996 3.004 24 H -0.261 1.261 25 H -0.276 1.276 26 H -0.263 1.263 27 C 0.137 3.863 28 H 0.105 0.895 29 C 0.057 3.943 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.271 0.729 49 H 0.067 0.933 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.539 0.815 25.634 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.172 4.172 3 C -0.117 4.117 4 C -0.128 4.128 5 C -0.026 4.026 6 H 0.071 0.929 7 C -0.231 4.231 8 N -0.256 5.256 9 C -0.074 4.074 10 C -0.133 4.133 11 C -0.111 4.111 12 H 0.147 0.853 13 C -0.026 4.026 14 N -0.367 5.367 15 C 0.350 3.650 16 O -0.438 6.438 17 C -0.268 4.268 18 S 0.086 5.914 19 C -0.696 4.696 20 H 0.095 0.905 21 C -0.189 4.189 22 N -0.547 5.547 23 Si 0.817 3.183 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.187 1.187 27 C 0.034 3.966 28 H 0.123 0.877 29 C -0.071 4.071 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.142 0.858 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.124 0.876 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.556 0.019 24.006 25.486 hybrid contribution -1.400 0.512 -0.127 1.496 sum 7.156 0.531 23.880 24.935 Atomic orbital electron populations 1.23919 0.96425 1.01665 1.01927 1.23129 0.96037 0.98756 0.99234 1.20511 0.98324 0.94737 0.98153 1.21507 0.97399 0.96125 0.97725 1.21662 0.91714 0.91113 0.98128 0.92947 1.22355 0.99077 1.02384 0.99331 1.62022 1.34232 1.01414 1.27917 1.21791 0.96988 0.99956 0.88656 1.20858 0.97960 0.92568 1.01963 1.22550 0.93860 0.98704 0.95987 0.85273 1.23870 0.95463 0.99977 0.83289 1.49788 1.13167 1.61626 1.12139 1.19344 0.89009 0.76842 0.79801 1.90641 1.42987 1.48399 1.61728 1.23238 0.98265 1.04591 1.00696 1.85500 1.13244 1.82062 1.10574 1.23151 0.93524 1.48919 1.04053 0.90492 1.26097 1.03956 0.93693 0.95120 1.70182 1.36346 1.40056 1.08119 0.85048 0.76410 0.79275 0.77543 1.18589 1.20125 1.18716 1.22527 0.89161 0.98472 0.86447 0.87713 1.21864 0.95267 0.89306 1.00712 0.90499 0.87074 0.85804 0.93358 0.94054 0.90489 0.90898 0.92556 0.91473 0.91108 0.90833 0.93267 0.93479 0.88505 0.90079 0.87620 0.89243 0.88843 0.91996 0.91526 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.86 14.32 67.78 0.97 -4.89 16 2 C -0.15 -4.27 9.52 25.65 0.24 -4.02 16 3 C -0.08 -2.47 5.54 29.85 0.17 -2.30 16 4 C -0.09 -2.03 4.60 30.60 0.14 -1.89 16 5 C 0.08 1.89 2.32 44.92 0.10 2.00 16 6 H 0.05 1.53 7.98 -2.39 -0.02 1.51 16 7 C -0.17 -2.77 8.42 71.98 0.61 -2.16 16 8 N -0.53 -12.67 3.98 -876.77 -3.49 -16.16 16 9 C 0.05 0.92 4.41 85.93 0.38 1.30 16 10 C -0.10 -1.43 5.75 29.71 0.17 -1.26 16 11 C -0.09 -1.26 4.39 -10.75 -0.05 -1.31 16 12 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 13 C 0.10 1.73 8.04 86.42 0.69 2.43 16 14 N -0.63 -18.01 3.30 -819.38 -2.70 -20.71 16 15 C 0.56 23.03 7.99 87.66 0.70 23.73 16 16 O -0.56 -27.70 15.60 -3.02 -0.05 -27.75 16 17 C -0.12 -5.18 5.93 71.24 0.42 -4.76 16 18 S -0.14 -8.27 20.57 -56.49 -1.16 -9.44 16 19 C -0.55 -32.78 9.50 67.96 0.65 -32.14 16 20 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 21 C 0.02 0.95 5.49 84.86 0.47 1.42 16 22 N -0.91 -57.59 13.22 21.65 0.29 -57.30 16 23 Si 1.00 44.95 29.55 68.60 2.03 46.97 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 27 C 0.14 2.86 4.43 44.25 0.20 3.05 16 28 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 29 C 0.06 1.32 4.45 85.97 0.38 1.71 16 30 H 0.08 2.53 7.84 -2.91 -0.02 2.51 16 31 H 0.11 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.12 2.83 8.06 -2.91 -0.02 2.80 16 33 H 0.05 1.80 7.40 -2.39 -0.02 1.78 16 34 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.48 6.16 -2.39 -0.01 1.46 16 37 H 0.06 0.88 6.82 -2.39 -0.02 0.87 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 39 H 0.07 0.96 6.54 -2.38 -0.02 0.94 16 40 H 0.07 1.32 5.97 -2.39 -0.01 1.30 16 41 H 0.05 0.67 6.65 -2.39 -0.02 0.65 16 42 H 0.05 0.95 7.36 -2.39 -0.02 0.93 16 43 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 44 H 0.08 1.50 7.68 -2.38 -0.02 1.48 16 45 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.09 3.79 8.14 -2.40 -0.02 3.78 16 47 H 0.09 3.86 8.14 -2.40 -0.02 3.84 16 48 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 49 H 0.07 1.17 6.83 -2.39 -0.02 1.16 16 50 H 0.05 1.56 7.45 -2.39 -0.02 1.54 16 Total: -1.00 -80.40 402.84 2.05 -78.35 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.90 Total: 25.15 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 6.24 Total: -19.11 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -5.91 Total: -94.18 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.44 kcal Total: -80.40 2.05 -78.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221289544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.785 kcal (2) G-P(sol) polarization free energy of solvation -80.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds