Wall clock time and date at job start Tue Mar 31 2020 20:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00107 * 2 1 4 4 N 1.46904 * 109.47193 * 125.00038 * 3 2 1 5 5 C 1.47852 * 110.99489 * 64.58200 * 4 3 2 6 6 C 1.54910 * 104.79246 * 146.36209 * 5 4 3 7 7 C 1.55143 * 101.65479 * 322.93460 * 6 5 4 8 8 C 1.47443 * 111.00095 * 185.42525 * 4 3 2 9 9 H 1.09004 * 109.88302 * 117.17748 * 8 4 3 10 10 C 1.52995 * 109.88921 * 356.15287 * 8 4 3 11 11 C 1.53043 * 109.45843 * 161.64180 * 10 8 4 12 12 C 1.53165 * 109.32607 * 181.38780 * 11 10 8 13 13 N 1.46935 * 108.76634 * 305.35124 * 12 11 10 14 14 C 1.34777 * 120.63251 * 233.63441 * 13 12 11 15 15 O 1.21275 * 120.00084 * 179.97438 * 14 13 12 16 16 C 1.50703 * 119.99497 * 359.97438 * 14 13 12 17 17 S 1.81006 * 109.46564 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99848 * 179.97438 * 17 16 14 19 19 H 1.08008 * 119.99895 * 359.97438 * 18 17 16 20 20 C 1.38795 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00124 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00295 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47143 * 89.99870 * 22 20 18 24 24 H 1.48492 * 109.47385 * 209.99883 * 22 20 18 25 25 H 1.48499 * 109.46858 * 330.00097 * 22 20 18 26 26 C 1.46924 * 118.73648 * 53.60914 * 13 12 11 27 27 C 1.53043 * 109.45985 * 281.69045 * 10 8 4 28 28 H 1.08001 * 119.99990 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00223 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99990 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47157 * 5.00847 * 3 2 1 32 32 H 1.09000 * 109.47772 * 245.00301 * 3 2 1 33 33 H 1.08998 * 110.37400 * 265.19255 * 5 4 3 34 34 H 1.09000 * 110.37395 * 27.54194 * 5 4 3 35 35 H 1.09007 * 110.98741 * 81.02299 * 6 5 4 36 36 H 1.08994 * 110.99182 * 204.80042 * 6 5 4 37 37 H 1.09000 * 110.70135 * 277.26506 * 7 6 5 38 38 H 1.08998 * 110.70524 * 154.03366 * 7 6 5 39 39 H 1.08996 * 109.46029 * 41.66710 * 10 8 4 40 40 H 1.09000 * 109.49709 * 301.31884 * 11 10 8 41 41 H 1.09000 * 109.49823 * 61.42022 * 11 10 8 42 42 H 1.08999 * 109.59282 * 185.57282 * 12 11 10 43 43 H 1.08996 * 109.59347 * 65.13661 * 12 11 10 44 44 H 1.08999 * 109.47201 * 299.99307 * 16 14 13 45 45 H 1.09002 * 109.47479 * 60.00383 * 16 14 13 46 46 H 0.97000 * 119.99868 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.58404 * 186.60156 * 26 13 12 48 48 H 1.09001 * 109.58372 * 66.18444 * 26 13 12 49 49 H 1.08997 * 109.50343 * 298.58376 * 27 10 8 50 50 H 1.09008 * 109.49232 * 58.64821 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3319 1.1345 5 6 4.0359 0.2906 0.9903 6 6 5.3075 0.9111 1.6210 7 6 5.1804 2.3951 1.1869 8 6 3.6586 2.6447 1.2431 9 1 3.3925 3.1171 2.1887 10 6 3.2346 3.5397 0.0769 11 6 3.5360 5.0005 0.4195 12 6 3.0786 5.8967 -0.7353 13 7 3.7081 5.4261 -1.9768 14 6 4.4111 6.2733 -2.7543 15 8 4.9263 5.8725 -3.7764 16 6 4.5570 7.7187 -2.3534 17 16 5.5473 8.5912 -3.5921 18 6 5.5566 10.2084 -2.8926 19 1 5.0403 10.3976 -1.9629 20 6 6.2264 11.2393 -3.5367 21 7 6.2330 12.4475 -3.0144 22 14 7.1187 10.9122 -5.1449 23 1 6.1900 11.1389 -6.2813 24 1 8.2790 11.8314 -5.2631 25 1 7.5964 9.5064 -5.1689 26 6 3.5570 4.0142 -2.3542 27 6 4.0088 3.1391 -1.1810 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6213 1.4027 -0.9314 33 1 3.7466 -0.6117 1.5291 34 1 4.2054 0.0668 -0.0629 35 1 5.2893 0.8190 2.7071 36 1 6.2089 0.4586 1.2079 37 1 5.5566 2.5336 0.1733 38 1 5.7040 3.0473 1.8859 39 1 2.1658 3.4216 -0.1015 40 1 3.0026 5.2785 1.3285 41 1 4.6079 5.1243 0.5737 42 1 3.3797 6.9260 -0.5405 43 1 1.9943 5.8431 -0.8323 44 1 3.5710 8.1787 -2.2873 45 1 5.0518 7.7788 -1.3840 46 1 6.7015 13.1679 -3.4644 47 1 4.1735 3.8015 -3.2275 48 1 2.5116 3.8071 -2.5833 49 1 5.0763 3.2804 -1.0117 50 1 3.8124 2.0918 -1.4109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230519019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:36 Heat of formation + Delta-G solvation = 8.102910 kcal Electronic energy + Delta-G solvation = -27821.157198 eV Core-core repulsion = 24168.610658 eV Total energy + Delta-G solvation = -3652.546541 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.06605 -39.43183 -36.89961 -34.94689 -33.38523 -32.44762 -31.70026 -31.27322 -29.52845 -28.33940 -25.75667 -25.62727 -24.71377 -23.49425 -22.44792 -21.36996 -19.99303 -19.64243 -18.63246 -17.67548 -16.87642 -16.44689 -16.31114 -15.89989 -15.48417 -15.40407 -15.07990 -14.95555 -14.39936 -14.05957 -13.93024 -13.76022 -13.30756 -13.25652 -13.14391 -12.93157 -12.82920 -12.66905 -12.39221 -12.15669 -11.89769 -11.63866 -11.59071 -11.42216 -11.28154 -11.23715 -11.02372 -11.01469 -10.74099 -10.68099 -10.58595 -10.36023 -9.86854 -9.82428 -9.47294 -9.01400 -8.68868 -8.49979 -8.43203 -6.93155 -6.29929 -4.01721 1.93246 2.70368 2.92239 3.19020 3.32390 3.49630 3.58044 3.68633 4.17293 4.28518 4.32243 4.37040 4.46618 4.57236 4.62523 4.69054 4.77784 4.83727 4.88067 4.99059 5.00098 5.05522 5.09125 5.12268 5.19184 5.20921 5.34246 5.36608 5.42183 5.50690 5.54630 5.55698 5.63036 5.64265 5.66420 5.69377 5.74850 5.77249 5.81285 5.89330 5.97697 6.04290 6.10697 6.27652 6.41585 6.55803 6.67114 6.73930 7.45989 7.93097 8.40251 8.43107 9.16321 10.79242 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023017 B = 0.002335 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.211841 B =11987.909430 C =12239.007436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C 0.058 3.942 4 N -0.519 5.519 5 C 0.042 3.958 6 C -0.130 4.130 7 C -0.152 4.152 8 C 0.079 3.921 9 H 0.088 0.912 10 C -0.112 4.112 11 C -0.127 4.127 12 C 0.107 3.893 13 N -0.617 5.617 14 C 0.534 3.466 15 O -0.521 6.521 16 C -0.121 4.121 17 S -0.144 6.144 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.114 3.886 27 C -0.142 4.142 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.271 0.729 47 H 0.092 0.908 48 H 0.062 0.938 49 H 0.078 0.922 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 -25.507 10.846 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.166 4.166 3 C -0.069 4.069 4 N -0.242 5.242 5 C -0.086 4.086 6 C -0.168 4.168 7 C -0.190 4.190 8 C -0.029 4.029 9 H 0.106 0.894 10 C -0.131 4.131 11 C -0.166 4.166 12 C -0.016 4.016 13 N -0.353 5.353 14 C 0.321 3.679 15 O -0.395 6.395 16 C -0.271 4.271 17 S 0.083 5.917 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.009 4.009 27 C -0.179 4.179 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.110 0.890 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.269 -25.991 9.762 28.969 hybrid contribution 0.158 0.767 -0.022 0.783 sum -8.111 -25.224 9.741 28.230 Atomic orbital electron populations 1.23801 0.95833 1.01830 1.00996 1.22879 0.95977 0.98108 0.99603 1.21879 0.95913 0.95853 0.93234 1.63824 1.16254 1.03352 1.40775 1.23067 0.90628 0.95585 0.99315 1.22689 0.97425 0.95517 1.01185 1.23194 0.96042 0.96645 1.03154 1.22486 0.92863 0.89175 0.98351 0.89447 1.21879 1.01204 0.95239 0.94776 1.21939 1.02553 0.94013 0.98079 1.21742 0.97465 0.99107 0.83307 1.48058 1.53887 1.09376 1.23962 1.20302 0.77044 0.87419 0.83098 1.90682 1.46509 1.77771 1.24581 1.23306 1.05102 0.93987 1.04740 1.84799 1.67024 1.07903 1.32007 1.22303 1.39919 0.92033 1.12542 0.89404 1.24713 0.94961 0.94019 0.97630 1.69939 1.41743 1.00613 1.39377 0.86733 0.80363 0.81003 0.83748 1.19212 1.19945 1.15944 1.21491 1.01198 0.80244 0.97958 1.22484 1.01275 0.99395 0.94747 0.88571 0.88548 0.87730 0.89723 0.92070 0.90476 0.93597 0.90840 0.90938 0.89688 0.90795 0.89450 0.90439 0.91101 0.89045 0.91444 0.88595 0.88549 0.91941 0.88959 0.91994 0.90328 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.24 14.32 29.02 0.42 -0.82 16 2 C -0.15 -1.05 9.24 -36.03 -0.33 -1.38 16 3 C 0.06 0.42 3.97 -4.98 -0.02 0.40 16 4 N -0.52 -4.02 5.19 -224.77 -1.17 -5.18 16 5 C 0.04 0.29 5.81 -2.29 -0.01 0.28 16 6 C -0.13 -0.87 7.08 -24.59 -0.17 -1.05 16 7 C -0.15 -1.13 6.05 -24.91 -0.15 -1.28 16 8 C 0.08 0.59 3.22 -66.73 -0.21 0.38 16 9 H 0.09 0.70 7.99 -51.93 -0.41 0.28 16 10 C -0.11 -0.85 1.46 -90.58 -0.13 -0.98 16 11 C -0.13 -1.05 5.22 -26.62 -0.14 -1.19 16 12 C 0.11 1.08 6.34 -3.72 -0.02 1.06 16 13 N -0.62 -8.13 2.97 -172.78 -0.51 -8.64 16 14 C 0.53 9.61 7.72 -10.98 -0.08 9.52 16 15 O -0.52 -11.29 15.27 5.56 0.08 -11.20 16 16 C -0.12 -2.35 4.50 36.01 0.16 -2.18 16 17 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 18 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 19 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 22 Si 0.86 21.80 27.74 -169.99 -4.72 17.08 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 26 C 0.11 1.27 6.43 -3.71 -0.02 1.24 16 27 C -0.14 -1.22 4.10 -26.61 -0.11 -1.33 16 28 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 29 H 0.10 0.55 8.06 -52.48 -0.42 0.12 16 30 H 0.10 0.70 7.73 -52.49 -0.41 0.29 16 31 H 0.08 0.62 5.77 -51.93 -0.30 0.32 16 32 H 0.06 0.45 4.44 -51.93 -0.23 0.22 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.32 7.70 -51.93 -0.40 -0.08 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.69 4.71 -51.93 -0.24 0.45 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.65 5.28 -51.93 -0.27 0.38 16 40 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 42 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 1.74 7.94 -51.92 -0.41 1.33 16 45 H 0.10 1.74 7.69 -51.92 -0.40 1.34 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.08 0.78 5.78 -51.93 -0.30 0.47 16 50 H 0.08 0.60 5.34 -51.92 -0.28 0.32 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -32.92 386.18 -10.45 -43.38 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.12 Total: -0.63 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.62 Total: -9.26 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.90 Total: -39.54 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.08 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.92 -10.45 -43.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230519019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.479 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds