Wall clock time and date at job start Tue Mar 31 2020 20:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00107 * 2 1 4 4 N 1.46904 * 109.47193 * 125.00038 * 3 2 1 5 5 C 1.47852 * 110.99489 * 64.58200 * 4 3 2 6 6 C 1.54910 * 104.79246 * 146.36209 * 5 4 3 7 7 C 1.55143 * 101.65479 * 322.93460 * 6 5 4 8 8 C 1.47443 * 111.00095 * 185.42525 * 4 3 2 9 9 H 1.09004 * 109.88302 * 117.17748 * 8 4 3 10 10 C 1.52995 * 109.88921 * 356.15287 * 8 4 3 11 11 C 1.53043 * 109.45843 * 161.64180 * 10 8 4 12 12 C 1.53165 * 109.32607 * 181.38780 * 11 10 8 13 13 N 1.46935 * 108.76634 * 305.35124 * 12 11 10 14 14 C 1.34777 * 120.63251 * 233.63441 * 13 12 11 15 15 O 1.21275 * 120.00084 * 179.97438 * 14 13 12 16 16 C 1.50703 * 119.99497 * 359.97438 * 14 13 12 17 17 S 1.81006 * 109.46564 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99848 * 179.97438 * 17 16 14 19 19 H 1.08008 * 119.99895 * 359.97438 * 18 17 16 20 20 C 1.38795 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00124 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00295 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47143 * 89.99870 * 22 20 18 24 24 H 1.48492 * 109.47385 * 209.99883 * 22 20 18 25 25 H 1.48499 * 109.46858 * 330.00097 * 22 20 18 26 26 C 1.46924 * 118.73648 * 53.60914 * 13 12 11 27 27 C 1.53043 * 109.45985 * 281.69045 * 10 8 4 28 28 H 1.08001 * 119.99990 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00223 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99990 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47157 * 5.00847 * 3 2 1 32 32 H 1.09000 * 109.47772 * 245.00301 * 3 2 1 33 33 H 1.08998 * 110.37400 * 265.19255 * 5 4 3 34 34 H 1.09000 * 110.37395 * 27.54194 * 5 4 3 35 35 H 1.09007 * 110.98741 * 81.02299 * 6 5 4 36 36 H 1.08994 * 110.99182 * 204.80042 * 6 5 4 37 37 H 1.09000 * 110.70135 * 277.26506 * 7 6 5 38 38 H 1.08998 * 110.70524 * 154.03366 * 7 6 5 39 39 H 1.08996 * 109.46029 * 41.66710 * 10 8 4 40 40 H 1.09000 * 109.49709 * 301.31884 * 11 10 8 41 41 H 1.09000 * 109.49823 * 61.42022 * 11 10 8 42 42 H 1.08999 * 109.59282 * 185.57282 * 12 11 10 43 43 H 1.08996 * 109.59347 * 65.13661 * 12 11 10 44 44 H 1.08999 * 109.47201 * 299.99307 * 16 14 13 45 45 H 1.09002 * 109.47479 * 60.00383 * 16 14 13 46 46 H 0.97000 * 119.99868 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.58404 * 186.60156 * 26 13 12 48 48 H 1.09001 * 109.58372 * 66.18444 * 26 13 12 49 49 H 1.08997 * 109.50343 * 298.58376 * 27 10 8 50 50 H 1.09008 * 109.49232 * 58.64821 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3319 1.1345 5 6 4.0359 0.2906 0.9903 6 6 5.3075 0.9111 1.6210 7 6 5.1804 2.3951 1.1869 8 6 3.6586 2.6447 1.2431 9 1 3.3925 3.1171 2.1887 10 6 3.2346 3.5397 0.0769 11 6 3.5360 5.0005 0.4195 12 6 3.0786 5.8967 -0.7353 13 7 3.7081 5.4261 -1.9768 14 6 4.4111 6.2733 -2.7543 15 8 4.9263 5.8725 -3.7764 16 6 4.5570 7.7187 -2.3534 17 16 5.5473 8.5912 -3.5921 18 6 5.5566 10.2084 -2.8926 19 1 5.0403 10.3976 -1.9629 20 6 6.2264 11.2393 -3.5367 21 7 6.2330 12.4475 -3.0144 22 14 7.1187 10.9122 -5.1449 23 1 6.1900 11.1389 -6.2813 24 1 8.2790 11.8314 -5.2631 25 1 7.5964 9.5064 -5.1689 26 6 3.5570 4.0142 -2.3542 27 6 4.0088 3.1391 -1.1810 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6213 1.4027 -0.9314 33 1 3.7466 -0.6117 1.5291 34 1 4.2054 0.0668 -0.0629 35 1 5.2893 0.8190 2.7071 36 1 6.2089 0.4586 1.2079 37 1 5.5566 2.5336 0.1733 38 1 5.7040 3.0473 1.8859 39 1 2.1658 3.4216 -0.1015 40 1 3.0026 5.2785 1.3285 41 1 4.6079 5.1243 0.5737 42 1 3.3797 6.9260 -0.5405 43 1 1.9943 5.8431 -0.8323 44 1 3.5710 8.1787 -2.2873 45 1 5.0518 7.7788 -1.3840 46 1 6.7015 13.1679 -3.4644 47 1 4.1735 3.8015 -3.2275 48 1 2.5116 3.8071 -2.5833 49 1 5.0763 3.2804 -1.0117 50 1 3.8124 2.0918 -1.4109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230519019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:35 Heat of formation + Delta-G solvation = -12.303577 kcal Electronic energy + Delta-G solvation = -27822.042090 eV Core-core repulsion = 24168.610658 eV Total energy + Delta-G solvation = -3653.431432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.83002 -40.55167 -37.93050 -35.48757 -34.68355 -34.32507 -32.60664 -31.83218 -30.75166 -29.22527 -27.86268 -26.30816 -25.55969 -24.32786 -23.12449 -22.09711 -20.91052 -20.30008 -19.88271 -19.20809 -18.13700 -17.25970 -17.08960 -16.96001 -16.84195 -16.67898 -16.19190 -15.78230 -15.63297 -15.16683 -14.95270 -14.83639 -14.72330 -14.26000 -14.13491 -13.75013 -13.62859 -13.62173 -13.40452 -13.30694 -13.03528 -12.96838 -12.84589 -12.60531 -12.30848 -12.16422 -11.96943 -11.88136 -11.84776 -11.69687 -11.44480 -11.32224 -11.18121 -11.00779 -10.89856 -10.52807 -10.33774 -9.73699 -9.06402 -9.01233 -8.52384 -6.23473 0.96543 1.30268 1.42484 1.45059 1.51027 1.53387 2.06779 2.24076 2.67319 2.85756 3.12457 3.48303 3.54929 3.72691 3.75666 3.83924 3.97671 4.09723 4.10057 4.17063 4.19313 4.26967 4.30669 4.34214 4.39994 4.45280 4.52902 4.54553 4.64731 4.75776 4.78156 4.81398 4.86666 4.92116 4.99309 5.03193 5.06387 5.10327 5.11573 5.15507 5.23978 5.41809 5.44683 5.55330 5.70024 5.77532 5.90769 6.10393 6.10508 6.18278 6.25128 6.92814 7.07569 8.59883 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023017 B = 0.002335 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.211841 B =11987.909430 C =12239.007436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C 0.060 3.940 4 N -0.526 5.526 5 C 0.042 3.958 6 C -0.127 4.127 7 C -0.153 4.153 8 C 0.084 3.916 9 H 0.088 0.912 10 C -0.103 4.103 11 C -0.121 4.121 12 C 0.099 3.901 13 N -0.602 5.602 14 C 0.533 3.467 15 O -0.566 6.566 16 C -0.105 4.105 17 S -0.178 6.178 18 C -0.527 4.527 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.238 1.238 26 C 0.111 3.889 27 C -0.131 4.131 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.277 0.723 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.825 -27.210 11.547 31.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.176 4.176 3 C -0.067 4.067 4 N -0.250 5.250 5 C -0.085 4.085 6 C -0.165 4.165 7 C -0.191 4.191 8 C -0.024 4.024 9 H 0.105 0.895 10 C -0.122 4.122 11 C -0.160 4.160 12 C -0.023 4.023 13 N -0.336 5.336 14 C 0.320 3.680 15 O -0.445 6.445 16 C -0.256 4.256 17 S 0.048 5.952 18 C -0.674 4.674 19 H 0.081 0.919 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.162 1.162 26 C -0.011 4.011 27 C -0.168 4.168 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.085 0.915 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.324 -27.714 10.513 31.073 hybrid contribution 0.346 1.188 -0.094 1.241 sum -8.978 -26.526 10.418 29.880 Atomic orbital electron populations 1.23949 0.95818 1.02450 1.00252 1.22938 0.96230 0.98178 1.00286 1.21866 0.95805 0.96056 0.92947 1.63838 1.16523 1.03438 1.41163 1.23073 0.90528 0.95534 0.99397 1.22679 0.97628 0.95023 1.01219 1.23173 0.96083 0.97155 1.02687 1.22425 0.92757 0.89137 0.98114 0.89452 1.21821 1.01476 0.94789 0.94157 1.21909 1.02145 0.93937 0.98005 1.22045 0.98614 0.99271 0.82366 1.48077 1.51959 1.09665 1.23931 1.20018 0.77634 0.87160 0.83150 1.90666 1.48892 1.78279 1.26626 1.23271 1.04613 0.94641 1.03040 1.84733 1.69054 1.06663 1.34733 1.22431 1.39304 0.93944 1.11751 0.91875 1.25550 0.95770 0.93891 1.00754 1.70013 1.42851 1.01519 1.40978 0.85877 0.79750 0.80902 0.79908 1.18717 1.18284 1.16198 1.21667 1.02076 0.79100 0.98232 1.22401 1.00658 0.99498 0.94225 0.88219 0.87769 0.87569 0.89519 0.92150 0.90256 0.93551 0.90791 0.90408 0.90444 0.90868 0.88485 0.88321 0.92178 0.89539 0.89089 0.87145 0.87178 0.91355 0.91250 0.89883 0.91515 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 14.32 67.78 0.97 -1.12 16 2 C -0.16 -1.92 9.24 25.65 0.24 -1.69 16 3 C 0.06 0.72 3.97 85.55 0.34 1.06 16 4 N -0.53 -6.98 5.19 -865.05 -4.49 -11.47 16 5 C 0.04 0.51 5.81 86.77 0.50 1.02 16 6 C -0.13 -1.51 7.08 31.98 0.23 -1.28 16 7 C -0.15 -2.03 6.05 31.78 0.19 -1.83 16 8 C 0.08 1.06 3.22 45.26 0.15 1.21 16 9 H 0.09 1.16 7.99 -2.39 -0.02 1.14 16 10 C -0.10 -1.30 1.46 -10.77 -0.02 -1.31 16 11 C -0.12 -1.68 5.22 30.66 0.16 -1.52 16 12 C 0.10 1.75 6.34 86.35 0.55 2.29 16 13 N -0.60 -14.92 2.97 -818.95 -2.43 -17.35 16 14 C 0.53 18.87 7.72 87.66 0.68 19.54 16 15 O -0.57 -24.67 15.27 -3.01 -0.05 -24.71 16 16 C -0.10 -4.01 4.50 71.24 0.32 -3.69 16 17 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 18 C -0.53 -30.66 10.04 67.95 0.68 -29.98 16 19 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 20 C 0.05 2.69 5.50 84.86 0.47 3.16 16 21 N -0.92 -55.66 13.97 21.65 0.30 -55.36 16 22 Si 0.91 45.15 27.74 68.60 1.90 47.05 16 23 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 26 C 0.11 2.30 6.43 86.36 0.56 2.85 16 27 C -0.13 -2.01 4.10 30.67 0.13 -1.89 16 28 H 0.10 1.03 7.84 -2.91 -0.02 1.00 16 29 H 0.10 0.97 8.06 -2.91 -0.02 0.95 16 30 H 0.11 1.23 7.73 -2.91 -0.02 1.21 16 31 H 0.09 1.01 5.77 -2.39 -0.01 1.00 16 32 H 0.06 0.73 4.44 -2.39 -0.01 0.72 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.56 7.70 -2.39 -0.02 0.54 16 35 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.08 1.16 4.71 -2.39 -0.01 1.15 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 1.10 5.28 -2.39 -0.01 1.09 16 40 H 0.10 1.02 8.12 -2.39 -0.02 1.00 16 41 H 0.06 1.00 8.03 -2.39 -0.02 0.98 16 42 H 0.09 1.65 5.93 -2.39 -0.01 1.63 16 43 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 44 H 0.11 3.90 7.94 -2.40 -0.02 3.88 16 45 H 0.11 3.90 7.69 -2.39 -0.02 3.88 16 46 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 47 H 0.07 1.80 7.00 -2.39 -0.02 1.79 16 48 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.07 1.24 5.78 -2.39 -0.01 1.22 16 50 H 0.09 1.20 5.34 -2.38 -0.01 1.19 16 Total: -1.00 -71.51 386.18 1.21 -70.30 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.89 Total: 14.86 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 6.13 Total: -13.17 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -6.62 Total: -84.18 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.71 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -71.51 1.21 -70.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230519019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.994 kcal (2) G-P(sol) polarization free energy of solvation -71.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds