Wall clock time and date at job start Tue Mar 31 2020 20:34:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52996 * 109.47107 * 2 1
4 4 H 1.09007 * 109.46731 * 304.99496 * 3 2 1
5 5 F 1.39895 * 109.47385 * 64.99419 * 3 2 1
6 6 C 1.50703 * 109.47005 * 184.99861 * 3 2 1
7 7 O 1.21277 * 120.00061 * 314.99608 * 6 3 2
8 8 N 1.34776 * 119.99770 * 134.99478 * 6 3 2
9 9 C 1.46504 * 120.00340 * 0.02562 * 8 6 3
10 10 C 1.46500 * 119.99966 * 179.97438 * 8 6 3
11 11 C 1.53002 * 109.46872 * 90.00029 * 10 8 6
12 12 N 1.46907 * 109.46965 * 180.02562 * 11 10 8
13 13 C 1.46901 * 110.99930 * 180.02562 * 12 11 10
14 14 C 1.50695 * 109.46891 * 179.97438 * 13 12 11
15 15 C 1.38299 * 119.93247 * 90.00141 * 14 13 12
16 16 C 1.38101 * 120.07425 * 179.97438 * 15 14 13
17 17 C 1.38886 * 119.92536 * 0.02562 * 16 15 14
18 18 O 1.35750 * 120.06440 * 180.02562 * 17 16 15
19 19 C 1.34828 * 117.00075 * 5.53777 * 18 17 16
20 20 H 1.07993 * 120.00518 * 354.94289 * 19 18 17
21 21 C 1.38663 * 119.99751 * 174.94575 * 19 18 17
22 22 N 1.31556 * 120.00220 * 359.97438 * 21 19 18
23 23 Si 1.86795 * 119.99821 * 180.02562 * 21 19 18
24 24 H 1.48498 * 109.47517 * 59.99414 * 23 21 19
25 25 H 1.48505 * 109.47332 * 179.97438 * 23 21 19
26 26 H 1.48502 * 109.46989 * 299.99567 * 23 21 19
27 27 C 1.38874 * 119.86623 * 0.27854 * 17 16 15
28 28 C 1.38106 * 119.92542 * 359.44577 * 27 17 16
29 29 H 1.09004 * 109.47237 * 180.02562 * 1 2 3
30 30 H 1.08992 * 109.47406 * 300.00299 * 1 2 3
31 31 H 1.08999 * 109.46683 * 60.00750 * 1 2 3
32 32 H 1.09001 * 109.47211 * 239.99624 * 2 1 3
33 33 H 1.09002 * 109.47105 * 119.99878 * 2 1 3
34 34 H 1.09002 * 109.46722 * 269.99991 * 9 8 6
35 35 H 1.08998 * 109.46979 * 29.99532 * 9 8 6
36 36 H 1.09000 * 109.46946 * 150.00094 * 9 8 6
37 37 H 1.09008 * 109.47322 * 330.00197 * 10 8 6
38 38 H 1.09002 * 109.47747 * 210.00548 * 10 8 6
39 39 H 1.09001 * 109.46831 * 60.00839 * 11 10 8
40 40 H 1.08990 * 109.47270 * 300.00061 * 11 10 8
41 41 H 1.00900 * 111.00053 * 56.04608 * 12 11 10
42 42 H 1.08998 * 109.46720 * 60.00340 * 13 12 11
43 43 H 1.08996 * 109.47268 * 299.99941 * 13 12 11
44 44 H 1.07999 * 119.96503 * 0.02562 * 15 14 13
45 45 H 1.07992 * 120.03608 * 180.02562 * 16 15 14
46 46 H 0.96996 * 120.00178 * 179.97438 * 22 21 19
47 47 H 1.07996 * 120.03745 * 179.72497 * 27 17 16
48 48 H 1.07997 * 119.96326 * 180.27708 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9814 -0.8419
5 9 1.6698 2.0680 1.1953
6 6 3.5419 1.4442 -0.1238
7 8 4.2064 0.6811 0.5447
8 7 4.1467 2.2939 -0.9775
9 6 3.3441 3.2162 -1.7847
10 6 5.6068 2.2961 -1.0974
11 6 6.0305 1.3065 -2.1847
12 7 7.4947 1.3082 -2.3046
13 6 7.9390 0.3679 -3.3421
14 6 9.4427 0.3977 -3.4363
15 6 10.1999 -0.4605 -2.6599
16 6 11.5782 -0.4360 -2.7443
17 6 12.2037 0.4521 -3.6097
18 8 13.5582 0.4782 -3.6953
19 6 14.2336 -0.4597 -3.0009
20 1 13.7018 -1.1352 -2.3474
21 6 15.6112 -0.5569 -3.1260
22 7 16.2591 0.2656 -3.9225
23 14 16.5468 -1.8568 -2.1647
24 1 16.0557 -3.2049 -2.5475
25 1 17.9959 -1.7526 -2.4722
26 1 16.3326 -1.6466 -0.7103
27 6 11.4408 1.3170 -4.3834
28 6 10.0628 1.2837 -4.2985
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8899
31 1 -0.3633 0.5137 -0.8901
32 1 1.8934 -0.5139 -0.8899
33 1 1.8934 -0.5138 0.8900
34 1 3.0841 2.7397 -2.7299
35 1 2.4328 3.4730 -1.2445
36 1 3.9182 4.1219 -1.9801
37 1 6.0500 2.0022 -0.1459
38 1 5.9481 3.2965 -1.3635
39 1 5.5874 1.6005 -3.1362
40 1 5.6893 0.3062 -1.9186
41 1 7.9303 1.1015 -1.4183
42 1 7.5095 0.6561 -4.3016
43 1 7.6106 -0.6390 -3.0847
44 1 9.7129 -1.1512 -1.9875
45 1 12.1688 -1.1067 -2.1381
46 1 17.2227 0.1979 -4.0097
47 1 11.9245 2.0118 -5.0539
48 1 9.4688 1.9529 -4.9032
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001266803558.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:34:35
Heat of formation + Delta-G solvation = -86.797453 kcal
Electronic energy + Delta-G solvation = -27896.160992 eV
Core-core repulsion = 23673.286087 eV
Total energy + Delta-G solvation = -4222.874905 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-48.35725 -40.30198 -39.07347 -37.30100 -36.44854 -35.18175 -34.48115 -32.34005
-31.04111 -30.15072 -28.94494 -27.89303 -26.69021 -25.46960 -24.08914 -22.85266
-22.04636 -21.91453 -20.44602 -19.83098 -18.23338 -17.97438 -17.27589 -17.02737
-16.74494 -16.05175 -15.82067 -15.27057 -15.01240 -14.77026 -14.53186 -14.43091
-14.35413 -13.87304 -13.72413 -13.57409 -13.49768 -13.40257 -13.30570 -13.12484
-12.74187 -12.67998 -12.53182 -12.38535 -12.29036 -11.92482 -11.63876 -11.61065
-11.37376 -11.25022 -11.19871 -10.78687 -10.66247 -10.60882 -10.42846 -10.15394
-9.33409 -9.23111 -8.83331 -8.45293 -8.16161 -7.18267 -6.44744 -4.03638
1.93502 2.21546 2.23825 2.37937 3.13614 3.14423 3.17272 3.66999
3.92661 3.97113 4.03819 4.24359 4.35467 4.51912 4.69224 4.69811
4.79848 4.82934 4.89262 4.97444 5.10179 5.10483 5.15532 5.25462
5.28820 5.34632 5.39537 5.40228 5.55546 5.57804 5.66974 5.68621
5.75595 5.80217 5.89062 5.97557 6.22327 6.43432 6.71258 6.74062
6.89217 6.97418 7.06471 7.26712 7.31758 7.42821 7.45944 7.53828
7.83788 8.00208 9.00777 9.70928 10.73130
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.023777 B = 0.001604 C = 0.001553
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1177.326045 B =17449.619633 C =18025.074909
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.142 4.142
3 C 0.079 3.921
4 H 0.104 0.896
5 F -0.190 7.190
6 C 0.491 3.509
7 O -0.515 6.515
8 N -0.608 5.608
9 C 0.070 3.930
10 C 0.114 3.886
11 C 0.045 3.955
12 N -0.683 5.683
13 C 0.121 3.879
14 C -0.187 4.187
15 C -0.065 4.065
16 C -0.235 4.235
17 C 0.156 3.844
18 O -0.178 6.178
19 C -0.393 4.393
20 H 0.091 0.909
21 C 0.040 3.960
22 N -0.862 5.862
23 Si 0.941 3.059
24 H -0.270 1.270
25 H -0.278 1.278
26 H -0.270 1.270
27 C -0.195 4.195
28 C -0.051 4.051
29 H 0.065 0.935
30 H 0.062 0.938
31 H 0.058 0.942
32 H 0.084 0.916
33 H 0.088 0.912
34 H 0.063 0.937
35 H 0.073 0.927
36 H 0.082 0.918
37 H 0.085 0.915
38 H 0.092 0.908
39 H 0.071 0.929
40 H 0.030 0.970
41 H 0.344 0.656
42 H 0.070 0.930
43 H 0.028 0.972
44 H 0.103 0.897
45 H 0.126 0.874
46 H 0.270 0.730
47 H 0.116 0.884
48 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.529 3.537 3.657 30.950
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.180 4.180
3 C 0.039 3.961
4 H 0.122 0.878
5 F -0.170 7.170
6 C 0.276 3.724
7 O -0.389 6.389
8 N -0.342 5.342
9 C -0.073 4.073
10 C -0.009 4.009
11 C -0.085 4.085
12 N -0.315 5.315
13 C -0.007 4.007
14 C -0.188 4.188
15 C -0.084 4.084
16 C -0.254 4.254
17 C 0.102 3.898
18 O -0.081 6.081
19 C -0.469 4.469
20 H 0.109 0.891
21 C -0.165 4.165
22 N -0.497 5.497
23 Si 0.765 3.235
24 H -0.195 1.195
25 H -0.203 1.203
26 H -0.195 1.195
27 C -0.214 4.214
28 C -0.070 4.070
29 H 0.084 0.916
30 H 0.081 0.919
31 H 0.077 0.923
32 H 0.102 0.898
33 H 0.106 0.894
34 H 0.082 0.918
35 H 0.092 0.908
36 H 0.101 0.899
37 H 0.103 0.897
38 H 0.110 0.890
39 H 0.090 0.910
40 H 0.048 0.952
41 H 0.162 0.838
42 H 0.088 0.912
43 H 0.046 0.954
44 H 0.121 0.879
45 H 0.144 0.856
46 H 0.080 0.920
47 H 0.135 0.865
48 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -29.750 3.883 3.427 30.197
hybrid contribution 0.332 -1.405 0.932 1.718
sum -29.418 2.479 4.360 29.843
Atomic orbital electron populations
1.21773 0.93966 1.02816 1.02496 1.22004 0.97405 0.93432 1.05154
1.21771 0.91999 0.96535 0.85750 0.87844 1.92887 1.92013 1.83861
1.48275 1.21039 0.90456 0.80788 0.80139 1.90755 1.65986 1.38614
1.43538 1.47888 1.07767 1.37383 1.41155 1.21995 0.96208 0.93802
0.95319 1.21542 0.77946 1.01122 1.00242 1.22240 0.89678 0.97796
0.98826 1.60525 1.04685 1.54806 1.11450 1.20590 0.92510 0.92752
0.94867 1.19087 0.93371 1.02497 1.03832 1.20603 0.93362 0.97215
0.97190 1.21121 0.94553 1.04770 1.04943 1.19412 0.84960 0.92925
0.92475 1.83977 1.12124 1.49345 1.62626 1.21280 0.89770 1.11909
1.23928 0.89133 1.25285 0.95725 0.98226 0.97235 1.70027 1.08998
1.35664 1.35030 0.85787 0.78430 0.79832 0.79416 1.19530 1.20259
1.19500 1.20219 0.92953 1.03814 1.04435 1.20453 0.93127 0.96465
0.96988 0.91563 0.91874 0.92309 0.89775 0.89377 0.91842 0.90814
0.89900 0.89666 0.89014 0.91046 0.95174 0.83762 0.91161 0.95401
0.87911 0.85631 0.91970 0.86549 0.87068
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.71 9.83 37.16 0.37 -0.35 16
2 C -0.14 -0.92 5.41 -26.73 -0.14 -1.06 16
3 C 0.08 0.56 3.16 -27.88 -0.09 0.47 16
4 H 0.10 0.40 5.86 -51.92 -0.30 0.09 16
5 F -0.19 -1.75 16.75 2.25 0.04 -1.72 16
6 C 0.49 4.85 7.01 -10.98 -0.08 4.78 16
7 O -0.51 -7.20 16.19 5.56 0.09 -7.11 16
8 N -0.61 -4.79 2.87 -181.56 -0.52 -5.31 16
9 C 0.07 0.28 9.94 59.85 0.59 0.87 16
10 C 0.11 1.03 5.71 -4.04 -0.02 1.01 16
11 C 0.05 0.45 6.01 -3.82 -0.02 0.43 16
12 N -0.68 -8.35 6.49 -115.06 -0.75 -9.09 16
13 C 0.12 1.62 5.81 -4.98 -0.03 1.59 16
14 C -0.19 -3.16 5.40 -104.58 -0.56 -3.72 16
15 C -0.06 -1.19 9.69 -39.61 -0.38 -1.57 16
16 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16
17 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16
18 O -0.18 -5.10 9.76 0.05 0.00 -5.10 16
19 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16
20 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16
21 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16
22 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16
23 Si 0.94 20.63 29.55 -169.99 -5.02 15.60 16
24 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16
25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
27 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16
28 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16
29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
30 H 0.06 0.32 7.93 -51.93 -0.41 -0.09 16
31 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16
32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16
33 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16
34 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16
35 H 0.07 0.20 6.23 -51.93 -0.32 -0.13 16
36 H 0.08 0.26 7.89 -51.93 -0.41 -0.15 16
37 H 0.08 0.93 7.42 -51.92 -0.39 0.55 16
38 H 0.09 0.73 7.89 -51.93 -0.41 0.32 16
39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
40 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16
41 H 0.34 4.38 8.72 -39.29 -0.34 4.03 16
42 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16
43 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16
44 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16
45 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16
46 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16
47 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16
48 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16
LS Contribution 403.40 15.07 6.08 6.08
Total: -1.00 -33.42 403.40 -8.25 -41.67
By element:
Atomic # 1 Polarization: 12.01 SS G_CDS: -7.35 Total: 4.65 kcal
Atomic # 6 Polarization: -13.51 SS G_CDS: -1.57 Total: -15.08 kcal
Atomic # 7 Polarization: -38.49 SS G_CDS: -0.51 Total: -39.00 kcal
Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal
Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.72 kcal
Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -33.42 -8.25 -41.67 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266803558.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.124 kcal
(2) G-P(sol) polarization free energy of solvation -33.419 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.543 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.797 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds