Wall clock time and date at job start Tue Mar 31 2020 20:34:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52996 * 109.47107 * 2 1
4 4 H 1.09007 * 109.46731 * 304.99496 * 3 2 1
5 5 F 1.39895 * 109.47385 * 64.99419 * 3 2 1
6 6 C 1.50703 * 109.47005 * 184.99861 * 3 2 1
7 7 O 1.21277 * 120.00061 * 314.99608 * 6 3 2
8 8 N 1.34776 * 119.99770 * 134.99478 * 6 3 2
9 9 C 1.46504 * 120.00340 * 0.02562 * 8 6 3
10 10 C 1.46500 * 119.99966 * 179.97438 * 8 6 3
11 11 C 1.53002 * 109.46872 * 90.00029 * 10 8 6
12 12 N 1.46907 * 109.46965 * 180.02562 * 11 10 8
13 13 C 1.46901 * 110.99930 * 180.02562 * 12 11 10
14 14 C 1.50695 * 109.46891 * 179.97438 * 13 12 11
15 15 C 1.38299 * 119.93247 * 90.00141 * 14 13 12
16 16 C 1.38101 * 120.07425 * 179.97438 * 15 14 13
17 17 C 1.38886 * 119.92536 * 0.02562 * 16 15 14
18 18 O 1.35750 * 120.06440 * 180.02562 * 17 16 15
19 19 C 1.34828 * 117.00075 * 5.53777 * 18 17 16
20 20 H 1.07993 * 120.00518 * 354.94289 * 19 18 17
21 21 C 1.38663 * 119.99751 * 174.94575 * 19 18 17
22 22 N 1.31556 * 120.00220 * 359.97438 * 21 19 18
23 23 Si 1.86795 * 119.99821 * 180.02562 * 21 19 18
24 24 H 1.48498 * 109.47517 * 59.99414 * 23 21 19
25 25 H 1.48505 * 109.47332 * 179.97438 * 23 21 19
26 26 H 1.48502 * 109.46989 * 299.99567 * 23 21 19
27 27 C 1.38874 * 119.86623 * 0.27854 * 17 16 15
28 28 C 1.38106 * 119.92542 * 359.44577 * 27 17 16
29 29 H 1.09004 * 109.47237 * 180.02562 * 1 2 3
30 30 H 1.08992 * 109.47406 * 300.00299 * 1 2 3
31 31 H 1.08999 * 109.46683 * 60.00750 * 1 2 3
32 32 H 1.09001 * 109.47211 * 239.99624 * 2 1 3
33 33 H 1.09002 * 109.47105 * 119.99878 * 2 1 3
34 34 H 1.09002 * 109.46722 * 269.99991 * 9 8 6
35 35 H 1.08998 * 109.46979 * 29.99532 * 9 8 6
36 36 H 1.09000 * 109.46946 * 150.00094 * 9 8 6
37 37 H 1.09008 * 109.47322 * 330.00197 * 10 8 6
38 38 H 1.09002 * 109.47747 * 210.00548 * 10 8 6
39 39 H 1.09001 * 109.46831 * 60.00839 * 11 10 8
40 40 H 1.08990 * 109.47270 * 300.00061 * 11 10 8
41 41 H 1.00900 * 111.00053 * 56.04608 * 12 11 10
42 42 H 1.08998 * 109.46720 * 60.00340 * 13 12 11
43 43 H 1.08996 * 109.47268 * 299.99941 * 13 12 11
44 44 H 1.07999 * 119.96503 * 0.02562 * 15 14 13
45 45 H 1.07992 * 120.03608 * 180.02562 * 16 15 14
46 46 H 0.96996 * 120.00178 * 179.97438 * 22 21 19
47 47 H 1.07996 * 120.03745 * 179.72497 * 27 17 16
48 48 H 1.07997 * 119.96326 * 180.27708 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9814 -0.8419
5 9 1.6698 2.0680 1.1953
6 6 3.5419 1.4442 -0.1238
7 8 4.2064 0.6811 0.5447
8 7 4.1467 2.2939 -0.9775
9 6 3.3441 3.2162 -1.7847
10 6 5.6068 2.2961 -1.0974
11 6 6.0305 1.3065 -2.1847
12 7 7.4947 1.3082 -2.3046
13 6 7.9390 0.3679 -3.3421
14 6 9.4427 0.3977 -3.4363
15 6 10.1999 -0.4605 -2.6599
16 6 11.5782 -0.4360 -2.7443
17 6 12.2037 0.4521 -3.6097
18 8 13.5582 0.4782 -3.6953
19 6 14.2336 -0.4597 -3.0009
20 1 13.7018 -1.1352 -2.3474
21 6 15.6112 -0.5569 -3.1260
22 7 16.2591 0.2656 -3.9225
23 14 16.5468 -1.8568 -2.1647
24 1 16.0557 -3.2049 -2.5475
25 1 17.9959 -1.7526 -2.4722
26 1 16.3326 -1.6466 -0.7103
27 6 11.4408 1.3170 -4.3834
28 6 10.0628 1.2837 -4.2985
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8899
31 1 -0.3633 0.5137 -0.8901
32 1 1.8934 -0.5139 -0.8899
33 1 1.8934 -0.5138 0.8900
34 1 3.0841 2.7397 -2.7299
35 1 2.4328 3.4730 -1.2445
36 1 3.9182 4.1219 -1.9801
37 1 6.0500 2.0022 -0.1459
38 1 5.9481 3.2965 -1.3635
39 1 5.5874 1.6005 -3.1362
40 1 5.6893 0.3062 -1.9186
41 1 7.9303 1.1015 -1.4183
42 1 7.5095 0.6561 -4.3016
43 1 7.6106 -0.6390 -3.0847
44 1 9.7129 -1.1512 -1.9875
45 1 12.1688 -1.1067 -2.1381
46 1 17.2227 0.1979 -4.0097
47 1 11.9245 2.0118 -5.0539
48 1 9.4688 1.9529 -4.9032
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001266803558.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:34:34
Heat of formation + Delta-G solvation = -108.881510 kcal
Electronic energy + Delta-G solvation = -27897.118628 eV
Core-core repulsion = 23673.286087 eV
Total energy + Delta-G solvation = -4223.832542 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-48.99351 -41.02897 -40.78203 -38.74875 -37.47714 -36.17646 -35.00105 -34.29998
-32.19066 -31.76587 -29.98364 -28.47037 -27.63234 -27.09815 -25.27176 -23.68939
-23.53566 -22.64003 -21.96333 -20.51190 -19.84345 -18.91673 -18.78148 -17.89742
-17.41733 -17.07672 -16.54206 -16.41354 -16.34408 -15.95766 -15.80208 -15.64647
-15.46008 -15.18446 -14.97749 -14.72892 -14.45771 -14.30787 -14.12694 -13.91908
-13.85073 -13.71161 -13.51739 -13.34731 -13.09331 -12.98819 -12.91256 -12.75185
-12.42275 -12.32655 -12.18141 -12.10771 -12.04048 -12.00143 -11.75994 -11.18284
-10.88458 -10.79213 -9.87557 -9.77651 -9.44759 -8.91121 -8.47458 -6.15699
0.60698 0.66831 1.21577 1.34102 1.44509 1.50186 1.70321 2.17314
2.78324 3.06899 3.16014 3.42254 3.50783 3.56385 3.59289 3.84730
3.91802 4.02621 4.08326 4.13865 4.21982 4.23419 4.36820 4.46623
4.47718 4.51108 4.61464 4.66078 4.69742 4.72119 4.79611 4.82389
4.91780 4.94228 5.01702 5.09232 5.11979 5.14887 5.30948 5.31598
5.34026 5.57390 5.71569 5.80429 6.00735 6.02536 6.12713 6.24074
6.34192 6.85155 6.97080 7.77996 8.75414
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.023777 B = 0.001604 C = 0.001553
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1177.326045 B =17449.619633 C =18025.074909
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.142 4.142
3 C 0.080 3.920
4 H 0.145 0.855
5 F -0.203 7.203
6 C 0.482 3.518
7 O -0.568 6.568
8 N -0.602 5.602
9 C 0.059 3.941
10 C 0.116 3.884
11 C 0.056 3.944
12 N -0.686 5.686
13 C 0.125 3.875
14 C -0.159 4.159
15 C -0.065 4.065
16 C -0.245 4.245
17 C 0.114 3.886
18 O -0.232 6.232
19 C -0.415 4.415
20 H 0.100 0.900
21 C -0.022 4.022
22 N -0.919 5.919
23 Si 1.018 2.982
24 H -0.258 1.258
25 H -0.270 1.270
26 H -0.258 1.258
27 C -0.205 4.205
28 C -0.044 4.044
29 H 0.070 0.930
30 H 0.055 0.945
31 H 0.078 0.922
32 H 0.091 0.909
33 H 0.061 0.939
34 H 0.084 0.916
35 H 0.089 0.911
36 H 0.094 0.906
37 H 0.059 0.941
38 H 0.107 0.893
39 H 0.090 0.910
40 H 0.016 0.984
41 H 0.340 0.660
42 H 0.092 0.908
43 H 0.037 0.963
44 H 0.132 0.868
45 H 0.116 0.884
46 H 0.273 0.727
47 H 0.114 0.886
48 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -34.340 3.657 3.183 34.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.180 4.180
3 C 0.042 3.958
4 H 0.162 0.838
5 F -0.184 7.184
6 C 0.268 3.732
7 O -0.447 6.447
8 N -0.335 5.335
9 C -0.082 4.082
10 C -0.007 4.007
11 C -0.074 4.074
12 N -0.318 5.318
13 C -0.003 4.003
14 C -0.160 4.160
15 C -0.083 4.083
16 C -0.264 4.264
17 C 0.064 3.936
18 O -0.139 6.139
19 C -0.491 4.491
20 H 0.117 0.883
21 C -0.219 4.219
22 N -0.557 5.557
23 Si 0.837 3.163
24 H -0.183 1.183
25 H -0.195 1.195
26 H -0.183 1.183
27 C -0.225 4.225
28 C -0.062 4.062
29 H 0.089 0.911
30 H 0.074 0.926
31 H 0.097 0.903
32 H 0.110 0.890
33 H 0.080 0.920
34 H 0.102 0.898
35 H 0.108 0.892
36 H 0.113 0.887
37 H 0.078 0.922
38 H 0.125 0.875
39 H 0.109 0.891
40 H 0.034 0.966
41 H 0.158 0.842
42 H 0.110 0.890
43 H 0.056 0.944
44 H 0.150 0.850
45 H 0.134 0.866
46 H 0.082 0.918
47 H 0.132 0.868
48 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -33.650 4.039 2.931 34.018
hybrid contribution 1.129 -1.334 1.033 2.030
sum -32.521 2.705 3.965 32.874
Atomic orbital electron populations
1.21764 0.92346 1.03407 1.03132 1.22008 0.98719 0.92998 1.04293
1.21987 0.90157 0.97366 0.86326 0.83768 1.92859 1.91940 1.84123
1.49503 1.21627 0.91614 0.80265 0.79684 1.90728 1.67286 1.40922
1.45737 1.48010 1.07543 1.37124 1.40774 1.22332 0.96477 0.93600
0.95755 1.21440 0.78904 1.01582 0.98766 1.22194 0.88059 0.97305
0.99883 1.60491 1.06145 1.54132 1.10998 1.20592 0.89450 0.93864
0.96438 1.19592 0.95664 0.99794 1.00952 1.20936 0.91914 0.97866
0.97619 1.21214 0.96193 1.04369 1.04613 1.19969 0.84139 0.95030
0.94505 1.83938 1.14275 1.50965 1.64737 1.21766 0.90587 1.12379
1.24414 0.88278 1.26571 0.96395 1.00652 0.98329 1.70173 1.09351
1.38411 1.37795 0.84665 0.76828 0.76780 0.78047 1.18255 1.19470
1.18284 1.20493 0.94489 1.03333 1.04137 1.20863 0.91730 0.96678
0.96949 0.91073 0.92584 0.90266 0.89014 0.91979 0.89764 0.89217
0.88710 0.92198 0.87460 0.89146 0.96556 0.84233 0.89012 0.94447
0.84973 0.86618 0.91825 0.86812 0.83316
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.07 9.83 71.98 0.71 -0.36 16
2 C -0.14 -1.65 5.41 30.59 0.17 -1.48 16
3 C 0.08 0.98 3.16 29.85 0.09 1.07 16
4 H 0.15 0.53 5.86 -2.38 -0.01 0.51 16
5 F -0.20 -3.51 16.75 44.97 0.75 -2.76 16
6 C 0.48 8.91 7.01 87.66 0.61 9.52 16
7 O -0.57 -16.10 16.19 -3.02 -0.05 -16.15 16
8 N -0.60 -7.93 2.87 -846.73 -2.43 -10.36 16
9 C 0.06 0.22 9.94 127.77 1.27 1.49 16
10 C 0.12 1.85 5.71 86.38 0.49 2.35 16
11 C 0.06 0.94 6.01 86.30 0.52 1.45 16
12 N -0.69 -14.41 6.49 -517.94 -3.36 -17.78 16
13 C 0.12 2.80 5.81 85.56 0.50 3.30 16
14 C -0.16 -4.88 5.40 -19.84 -0.11 -4.99 16
15 C -0.06 -2.26 9.69 22.25 0.22 -2.05 16
16 C -0.24 -10.86 9.17 22.39 0.21 -10.66 16
17 C 0.11 5.77 6.65 22.58 0.15 5.92 16
18 O -0.23 -14.23 9.76 -22.72 -0.22 -14.46 16
19 C -0.42 -24.60 9.49 67.92 0.64 -23.96 16
20 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16
21 C -0.02 -1.26 5.49 84.84 0.47 -0.79 16
22 N -0.92 -56.94 13.67 21.62 0.30 -56.64 16
23 Si 1.02 43.47 29.55 68.60 2.03 45.50 16
24 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16
25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16
26 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
27 C -0.21 -8.78 9.99 22.39 0.22 -8.56 16
28 C -0.04 -1.45 9.69 22.25 0.22 -1.24 16
29 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16
30 H 0.06 0.49 7.93 -2.39 -0.02 0.47 16
31 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16
32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16
33 H 0.06 1.04 8.05 -2.39 -0.02 1.02 16
34 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16
35 H 0.09 0.08 6.23 -2.39 -0.01 0.07 16
36 H 0.09 0.19 7.89 -2.39 -0.02 0.17 16
37 H 0.06 1.28 7.42 -2.38 -0.02 1.26 16
38 H 0.11 1.38 7.89 -2.39 -0.02 1.36 16
39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16
40 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16
41 H 0.34 7.80 8.72 -89.69 -0.78 7.02 16
42 H 0.09 1.77 8.08 -2.39 -0.02 1.75 16
43 H 0.04 0.81 8.08 -2.39 -0.02 0.79 16
44 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16
45 H 0.12 5.26 5.64 -2.91 -0.02 5.25 16
46 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16
47 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16
48 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16
Total: -1.00 -79.66 403.40 3.57 -76.08
By element:
Atomic # 1 Polarization: 25.35 SS G_CDS: 0.19 Total: 25.54 kcal
Atomic # 6 Polarization: -35.35 SS G_CDS: 6.38 Total: -28.98 kcal
Atomic # 7 Polarization: -79.28 SS G_CDS: -5.50 Total: -84.78 kcal
Atomic # 8 Polarization: -30.34 SS G_CDS: -0.27 Total: -30.61 kcal
Atomic # 9 Polarization: -3.51 SS G_CDS: 0.75 Total: -2.76 kcal
Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal
Total: -79.66 3.57 -76.08 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266803558.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.798 kcal
(2) G-P(sol) polarization free energy of solvation -79.658 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.456 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.083 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.882 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds