Wall clock time and date at job start Tue Mar 31 2020 20:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.09004 * 109.47316 * 305.00034 * 3 2 1 5 5 O 1.42902 * 109.47458 * 64.99797 * 3 2 1 6 6 C 1.35956 * 117.00118 * 260.44103 * 5 3 2 7 7 C 1.38662 * 120.06314 * 5.66522 * 6 5 3 8 8 C 1.38181 * 119.96670 * 179.72384 * 7 6 5 9 9 C 1.38261 * 120.09654 * 0.55262 * 8 7 6 10 10 C 1.38264 * 120.12585 * 359.72531 * 9 8 7 11 11 C 1.38337 * 120.02633 * 359.97438 * 10 9 8 12 12 F 1.35094 * 120.04136 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47170 * 185.00012 * 3 2 1 14 14 O 1.21278 * 119.99871 * 245.00465 * 13 3 2 15 15 N 1.34772 * 119.99673 * 64.99897 * 13 3 2 16 16 C 1.46509 * 119.99851 * 180.02562 * 15 13 3 17 17 C 1.52992 * 109.47073 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.46832 * 179.97438 * 17 16 15 19 19 H 1.08993 * 109.47339 * 305.00330 * 18 17 16 20 20 C 1.53004 * 109.47243 * 184.99829 * 18 17 16 21 21 N 1.46498 * 109.46802 * 65.00523 * 18 17 16 22 22 C 1.36944 * 119.99758 * 204.99683 * 21 18 17 23 23 H 1.07997 * 120.00260 * 0.02562 * 22 21 18 24 24 C 1.38813 * 119.99768 * 179.97438 * 22 21 18 25 25 N 1.31623 * 119.99970 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00075 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47301 * 89.99865 * 26 24 22 28 28 H 1.48507 * 109.47005 * 209.99751 * 26 24 22 29 29 H 1.48499 * 109.47274 * 329.99400 * 26 24 22 30 30 H 1.08994 * 109.47039 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46731 * 300.00214 * 1 2 3 32 32 H 1.09000 * 109.46898 * 59.99756 * 1 2 3 33 33 H 1.09000 * 109.46898 * 120.00244 * 2 1 3 34 34 H 1.08997 * 109.46950 * 239.99319 * 2 1 3 35 35 H 1.08000 * 120.01072 * 359.97438 * 7 6 5 36 36 H 1.08005 * 119.94795 * 180.27580 * 8 7 6 37 37 H 1.08002 * 119.93828 * 179.74458 * 9 8 7 38 38 H 1.07996 * 119.97968 * 179.97438 * 10 9 8 39 39 H 0.96994 * 120.00473 * 359.97438 * 15 13 3 40 40 H 1.08999 * 109.46400 * 300.00140 * 16 15 13 41 41 H 1.08998 * 109.46805 * 59.99700 * 16 15 13 42 42 H 1.08994 * 109.47494 * 299.99775 * 17 16 15 43 43 H 1.08998 * 109.47291 * 60.00315 * 17 16 15 44 44 H 1.09005 * 109.46630 * 60.00429 * 20 18 17 45 45 H 1.08993 * 109.47355 * 179.97438 * 20 18 17 46 46 H 1.09001 * 109.47197 * 300.00782 * 20 18 17 47 47 H 0.97001 * 120.00401 * 24.99918 * 21 18 17 48 48 H 0.97001 * 120.00193 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 0.5680 2.8877 1.1828 7 6 -0.1951 2.9688 0.0279 8 6 -1.3099 3.7845 -0.0070 9 6 -1.6592 4.5289 1.1045 10 6 -0.8978 4.4555 2.2563 11 6 0.2157 3.6358 2.2989 12 9 0.9596 3.5634 3.4242 13 6 3.5420 1.4442 -0.1238 14 8 4.2251 1.8609 0.7875 15 7 4.1260 0.9827 -1.2473 16 6 5.5862 0.9839 -1.3676 17 6 5.9862 0.4126 -2.7293 18 6 7.5111 0.4144 -2.8550 19 1 7.8890 1.4213 -2.6780 20 6 7.9074 -0.0393 -4.2614 21 7 8.0836 -0.5028 -1.8666 22 6 9.3658 -0.3178 -1.4228 23 1 9.9548 0.5046 -1.8010 24 6 9.9081 -1.1866 -0.4858 25 7 11.1404 -1.0085 -0.0588 26 14 8.8892 -2.6087 0.1690 27 1 9.0951 -3.8022 -0.6903 28 1 9.3101 -2.9206 1.5586 29 1 7.4523 -2.2338 0.1595 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 0.0795 2.3915 -0.8426 36 1 -1.9066 3.8440 -0.9052 37 1 -2.5287 5.1688 1.0731 38 1 -1.1726 5.0383 3.1229 39 1 3.5797 0.6490 -1.9761 40 1 5.9571 2.0049 -1.2782 41 1 6.0163 0.3704 -0.5759 42 1 5.6153 -0.6084 -2.8182 43 1 5.5560 1.0257 -3.5211 44 1 7.4814 0.6432 -4.9969 45 1 8.9937 -0.0375 -4.3512 46 1 7.5294 -1.0462 -4.4384 47 1 7.5545 -1.2413 -1.5265 48 1 11.5195 -1.6158 0.5957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267152861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:44 Heat of formation + Delta-G solvation = -82.453275 kcal Electronic energy + Delta-G solvation = -29212.023577 eV Core-core repulsion = 24989.337049 eV Total energy + Delta-G solvation = -4222.686528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.97695 -41.03409 -39.44785 -37.79250 -36.73537 -34.72811 -34.00431 -32.23889 -31.13480 -30.42229 -29.93831 -28.77382 -27.32279 -23.97266 -23.69601 -22.88416 -22.75957 -21.90559 -20.61408 -19.85857 -19.10570 -17.91811 -17.48826 -17.25477 -16.68335 -16.32735 -15.91639 -15.65099 -15.45148 -15.17211 -14.98055 -14.63742 -14.29477 -14.21887 -14.02795 -13.58152 -13.42965 -13.20613 -13.04856 -12.73573 -12.55874 -12.46524 -12.29423 -12.22198 -12.10118 -11.97512 -11.83533 -11.44366 -11.26580 -11.08275 -11.00665 -10.80179 -10.68093 -10.43353 -10.04355 -9.76030 -9.56779 -9.33768 -9.05568 -8.92049 -8.55085 -7.26701 -5.74713 -3.10618 0.70131 0.83526 2.31297 2.48523 3.15808 3.28276 3.39338 3.41246 3.47991 3.87810 4.17455 4.25409 4.31171 4.41518 4.48764 4.61162 4.68361 4.80317 4.81477 4.94615 5.07194 5.10547 5.15101 5.19347 5.43487 5.44979 5.53220 5.57052 5.59359 5.61907 5.64260 5.74233 5.79209 5.91114 5.94415 6.03450 6.18639 6.20860 6.22748 6.30886 6.44413 6.48723 6.75664 6.88358 6.95156 7.40038 8.00784 8.13446 8.44081 9.22067 9.94557 10.13273 11.43693 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.002365 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.808438 B =11837.390405 C =12386.592951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.065 3.935 4 H 0.103 0.897 5 O -0.272 6.272 6 C 0.101 3.899 7 C -0.189 4.189 8 C -0.089 4.089 9 C -0.131 4.131 10 C -0.117 4.117 11 C 0.071 3.929 12 F -0.129 7.129 13 C 0.506 3.494 14 O -0.508 6.508 15 N -0.725 5.725 16 C 0.121 3.879 17 C -0.135 4.135 18 C 0.179 3.821 19 H 0.058 0.942 20 C -0.163 4.163 21 N -0.748 5.748 22 C -0.242 4.242 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.933 5.933 26 Si 0.883 3.117 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.397 0.603 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.039 0.961 45 H 0.059 0.941 46 H 0.045 0.955 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.741 7.742 -4.848 33.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C 0.005 3.995 4 H 0.121 0.879 5 O -0.184 6.184 6 C 0.054 3.946 7 C -0.207 4.207 8 C -0.108 4.108 9 C -0.150 4.150 10 C -0.135 4.135 11 C 0.052 3.948 12 F -0.107 7.107 13 C 0.289 3.711 14 O -0.381 6.381 15 N -0.378 5.378 16 C -0.002 4.002 17 C -0.174 4.174 18 C 0.069 3.931 19 H 0.076 0.924 20 C -0.224 4.224 21 N -0.391 5.391 22 C -0.372 4.372 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.581 5.581 26 Si 0.714 3.286 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -30.804 8.097 -3.889 32.087 hybrid contribution -0.730 -1.343 0.174 1.539 sum -31.534 6.754 -3.716 32.463 Atomic orbital electron populations 1.21938 0.94367 1.02801 1.02245 1.21999 0.97365 0.93684 1.04666 1.22486 0.93679 0.95490 0.87855 0.87920 1.86316 1.41742 1.57756 1.32598 1.19120 0.88809 0.92463 0.94169 1.21293 0.97792 1.04058 0.97568 1.21006 0.95884 0.95111 0.98755 1.20943 1.00593 1.00922 0.92505 1.21068 0.93623 0.98603 1.00250 1.17048 0.94081 1.01026 0.82695 1.91542 1.75470 1.95197 1.48494 1.20167 0.88987 0.78873 0.83079 1.90807 1.64521 1.44479 1.38336 1.46011 1.08950 1.65059 1.17799 1.21519 0.77181 1.02417 0.99052 1.22109 0.98785 1.00991 0.95498 1.20126 0.88966 0.94800 0.89165 0.92365 1.22392 1.02243 1.00025 0.97692 1.42822 1.14408 1.32692 1.49223 1.19051 0.88138 1.11263 1.18774 0.89171 1.24665 0.96112 0.98962 0.99326 1.69696 1.13950 1.39588 1.34875 0.86571 0.79960 0.83517 0.78568 1.21228 1.21755 1.20388 0.91610 0.92056 0.92239 0.89700 0.89421 0.84064 0.84975 0.84817 0.84000 0.76977 0.91167 0.90033 0.91661 0.91359 0.94231 0.92188 0.93626 0.80712 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 8.49 37.16 0.32 -0.69 16 2 C -0.14 -1.14 5.61 -26.73 -0.15 -1.29 16 3 C 0.06 0.68 2.53 -27.88 -0.07 0.61 16 4 H 0.10 0.74 5.42 -51.93 -0.28 0.46 16 5 O -0.27 -3.67 8.98 -39.46 -0.35 -4.02 16 6 C 0.10 1.12 5.66 -39.18 -0.22 0.90 16 7 C -0.19 -1.43 7.38 -39.45 -0.29 -1.72 16 8 C -0.09 -0.53 10.04 -39.59 -0.40 -0.93 16 9 C -0.13 -0.80 10.04 -39.56 -0.40 -1.20 16 10 C -0.12 -0.94 10.02 -39.54 -0.40 -1.33 16 11 C 0.07 0.82 7.31 -39.30 -0.29 0.53 16 12 F -0.13 -1.80 17.11 2.25 0.04 -1.76 16 13 C 0.51 7.23 7.18 -10.99 -0.08 7.16 16 14 O -0.51 -10.21 16.51 -14.30 -0.24 -10.45 16 15 N -0.72 -8.59 5.46 -60.29 -0.33 -8.92 16 16 C 0.12 1.84 5.56 -4.04 -0.02 1.81 16 17 C -0.14 -1.81 4.87 -26.73 -0.13 -1.94 16 18 C 0.18 3.19 2.89 -67.93 -0.20 3.00 16 19 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 20 C -0.16 -2.64 9.49 37.16 0.35 -2.29 16 21 N -0.75 -17.05 4.38 -53.42 -0.23 -17.28 16 22 C -0.24 -6.77 10.41 -15.06 -0.16 -6.92 16 23 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 24 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 25 N -0.93 -29.64 13.97 55.49 0.78 -28.87 16 26 Si 0.88 22.47 27.74 -169.99 -4.71 17.76 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 29 H -0.28 -6.66 6.52 56.52 0.37 -6.30 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 32 H 0.06 0.27 6.74 -51.93 -0.35 -0.08 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.53 7.77 -51.93 -0.40 0.13 16 35 H 0.14 0.77 4.28 -52.49 -0.22 0.55 16 36 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 37 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.40 3.07 8.18 -40.82 -0.33 2.73 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.55 7.75 -51.93 -0.40 1.15 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 48 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -36.72 393.96 -8.57 -45.29 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.23 Total: 6.58 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.22 Total: -4.26 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.21 Total: -55.07 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.59 Total: -14.47 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.72 -8.57 -45.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267152861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.160 kcal (2) G-P(sol) polarization free energy of solvation -36.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds