Wall clock time and date at job start Tue Mar 31 2020 20:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.09004 * 109.47316 * 305.00034 * 3 2 1 5 5 O 1.42902 * 109.47458 * 64.99797 * 3 2 1 6 6 C 1.35956 * 117.00118 * 260.44103 * 5 3 2 7 7 C 1.38662 * 120.06314 * 5.66522 * 6 5 3 8 8 C 1.38181 * 119.96670 * 179.72384 * 7 6 5 9 9 C 1.38261 * 120.09654 * 0.55262 * 8 7 6 10 10 C 1.38264 * 120.12585 * 359.72531 * 9 8 7 11 11 C 1.38337 * 120.02633 * 359.97438 * 10 9 8 12 12 F 1.35094 * 120.04136 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47170 * 185.00012 * 3 2 1 14 14 O 1.21278 * 119.99871 * 245.00465 * 13 3 2 15 15 N 1.34772 * 119.99673 * 64.99897 * 13 3 2 16 16 C 1.46509 * 119.99851 * 180.02562 * 15 13 3 17 17 C 1.52992 * 109.47073 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.46832 * 179.97438 * 17 16 15 19 19 H 1.08993 * 109.47339 * 305.00330 * 18 17 16 20 20 C 1.53004 * 109.47243 * 184.99829 * 18 17 16 21 21 N 1.46498 * 109.46802 * 65.00523 * 18 17 16 22 22 C 1.36944 * 119.99758 * 204.99683 * 21 18 17 23 23 H 1.07997 * 120.00260 * 0.02562 * 22 21 18 24 24 C 1.38813 * 119.99768 * 179.97438 * 22 21 18 25 25 N 1.31623 * 119.99970 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00075 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47301 * 89.99865 * 26 24 22 28 28 H 1.48507 * 109.47005 * 209.99751 * 26 24 22 29 29 H 1.48499 * 109.47274 * 329.99400 * 26 24 22 30 30 H 1.08994 * 109.47039 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46731 * 300.00214 * 1 2 3 32 32 H 1.09000 * 109.46898 * 59.99756 * 1 2 3 33 33 H 1.09000 * 109.46898 * 120.00244 * 2 1 3 34 34 H 1.08997 * 109.46950 * 239.99319 * 2 1 3 35 35 H 1.08000 * 120.01072 * 359.97438 * 7 6 5 36 36 H 1.08005 * 119.94795 * 180.27580 * 8 7 6 37 37 H 1.08002 * 119.93828 * 179.74458 * 9 8 7 38 38 H 1.07996 * 119.97968 * 179.97438 * 10 9 8 39 39 H 0.96994 * 120.00473 * 359.97438 * 15 13 3 40 40 H 1.08999 * 109.46400 * 300.00140 * 16 15 13 41 41 H 1.08998 * 109.46805 * 59.99700 * 16 15 13 42 42 H 1.08994 * 109.47494 * 299.99775 * 17 16 15 43 43 H 1.08998 * 109.47291 * 60.00315 * 17 16 15 44 44 H 1.09005 * 109.46630 * 60.00429 * 20 18 17 45 45 H 1.08993 * 109.47355 * 179.97438 * 20 18 17 46 46 H 1.09001 * 109.47197 * 300.00782 * 20 18 17 47 47 H 0.97001 * 120.00401 * 24.99918 * 21 18 17 48 48 H 0.97001 * 120.00193 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 0.5680 2.8877 1.1828 7 6 -0.1951 2.9688 0.0279 8 6 -1.3099 3.7845 -0.0070 9 6 -1.6592 4.5289 1.1045 10 6 -0.8978 4.4555 2.2563 11 6 0.2157 3.6358 2.2989 12 9 0.9596 3.5634 3.4242 13 6 3.5420 1.4442 -0.1238 14 8 4.2251 1.8609 0.7875 15 7 4.1260 0.9827 -1.2473 16 6 5.5862 0.9839 -1.3676 17 6 5.9862 0.4126 -2.7293 18 6 7.5111 0.4144 -2.8550 19 1 7.8890 1.4213 -2.6780 20 6 7.9074 -0.0393 -4.2614 21 7 8.0836 -0.5028 -1.8666 22 6 9.3658 -0.3178 -1.4228 23 1 9.9548 0.5046 -1.8010 24 6 9.9081 -1.1866 -0.4858 25 7 11.1404 -1.0085 -0.0588 26 14 8.8892 -2.6087 0.1690 27 1 9.0951 -3.8022 -0.6903 28 1 9.3101 -2.9206 1.5586 29 1 7.4523 -2.2338 0.1595 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 0.0795 2.3915 -0.8426 36 1 -1.9066 3.8440 -0.9052 37 1 -2.5287 5.1688 1.0731 38 1 -1.1726 5.0383 3.1229 39 1 3.5797 0.6490 -1.9761 40 1 5.9571 2.0049 -1.2782 41 1 6.0163 0.3704 -0.5759 42 1 5.6153 -0.6084 -2.8182 43 1 5.5560 1.0257 -3.5211 44 1 7.4814 0.6432 -4.9969 45 1 8.9937 -0.0375 -4.3512 46 1 7.5294 -1.0462 -4.4384 47 1 7.5545 -1.2413 -1.5265 48 1 11.5195 -1.6158 0.5957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267152861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:43 Heat of formation + Delta-G solvation = -108.128607 kcal Electronic energy + Delta-G solvation = -29213.136942 eV Core-core repulsion = 24989.337049 eV Total energy + Delta-G solvation = -4223.799893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.86483 -41.86891 -40.42413 -38.59045 -38.15513 -36.04692 -34.86627 -34.10949 -31.78382 -31.63101 -31.00642 -30.04144 -28.18064 -25.61183 -24.50978 -24.05009 -23.49593 -22.80931 -21.80926 -21.19427 -19.83942 -19.68695 -18.65983 -18.02103 -17.49647 -17.20156 -17.02103 -16.90143 -16.49036 -16.11267 -15.90342 -15.77855 -15.54069 -15.35197 -15.12978 -14.80480 -14.60474 -14.34694 -14.15289 -13.81671 -13.71509 -13.60307 -13.41135 -13.13679 -12.94581 -12.91522 -12.65585 -12.61761 -12.38908 -12.31163 -12.26085 -12.06985 -12.03907 -11.79571 -11.63470 -11.58367 -11.02446 -10.88325 -10.23414 -9.92739 -9.30251 -9.24005 -8.02628 -5.34074 0.12002 0.23506 1.32837 1.37848 1.38094 1.43954 1.49500 2.38708 2.46812 2.60115 3.23912 3.29697 3.41878 3.53273 3.62694 3.65183 3.79939 3.92577 3.95203 4.14564 4.15722 4.26492 4.29191 4.34058 4.37222 4.52405 4.64207 4.69358 4.74799 4.83200 4.92390 4.99252 5.00611 5.07646 5.08801 5.09422 5.14024 5.25781 5.31074 5.33168 5.37194 5.42424 5.60026 5.67181 5.79687 6.18729 6.22288 6.46097 7.09630 7.12641 7.87158 8.03925 9.19475 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.002365 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.808438 B =11837.390405 C =12386.592951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.071 3.929 4 H 0.142 0.858 5 O -0.313 6.313 6 C 0.075 3.925 7 C -0.184 4.184 8 C -0.078 4.078 9 C -0.124 4.124 10 C -0.119 4.119 11 C 0.022 3.978 12 F -0.159 7.159 13 C 0.499 3.501 14 O -0.580 6.580 15 N -0.700 5.700 16 C 0.126 3.874 17 C -0.116 4.116 18 C 0.166 3.834 19 H 0.040 0.960 20 C -0.154 4.154 21 N -0.751 5.751 22 C -0.220 4.220 23 H 0.056 0.944 24 C -0.070 4.070 25 N -0.987 5.987 26 Si 0.952 3.048 27 H -0.273 1.273 28 H -0.304 1.304 29 H -0.256 1.256 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.116 0.884 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.168 0.832 38 H 0.155 0.845 39 H 0.423 0.577 40 H 0.050 0.950 41 H 0.038 0.962 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.026 0.974 46 H 0.056 0.944 47 H 0.364 0.636 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.906 7.344 -8.605 38.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.012 3.988 4 H 0.159 0.841 5 O -0.227 6.227 6 C 0.029 3.971 7 C -0.202 4.202 8 C -0.096 4.096 9 C -0.142 4.142 10 C -0.138 4.138 11 C 0.002 3.998 12 F -0.138 7.138 13 C 0.285 3.715 14 O -0.458 6.458 15 N -0.355 5.355 16 C 0.002 3.998 17 C -0.155 4.155 18 C 0.058 3.942 19 H 0.058 0.942 20 C -0.213 4.213 21 N -0.395 5.395 22 C -0.351 4.351 23 H 0.074 0.926 24 C -0.260 4.260 25 N -0.638 5.638 26 Si 0.780 3.220 27 H -0.199 1.199 28 H -0.231 1.231 29 H -0.181 1.181 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.184 0.816 36 H 0.190 0.810 37 H 0.186 0.814 38 H 0.172 0.828 39 H 0.261 0.739 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.098 0.902 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.197 0.803 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -36.065 7.696 -7.748 37.682 hybrid contribution 0.812 -1.044 1.248 1.818 sum -35.253 6.652 -6.500 36.459 Atomic orbital electron populations 1.21920 0.92591 1.03619 1.02688 1.22046 0.98826 0.91882 1.04593 1.22633 0.90445 0.97283 0.88484 0.84062 1.86263 1.43272 1.58778 1.34354 1.19434 0.89157 0.93000 0.95494 1.21594 0.97614 1.04262 0.96776 1.21526 0.94987 0.93164 0.99883 1.21417 1.00727 1.00558 0.91483 1.21353 0.92706 0.97858 1.01841 1.17710 0.95816 1.03654 0.82573 1.91448 1.76544 1.95668 1.50136 1.21068 0.90818 0.77297 0.82351 1.90776 1.66444 1.47712 1.40892 1.45708 1.07749 1.63971 1.18053 1.21228 0.79025 1.00533 0.99017 1.21966 0.95081 1.03075 0.95334 1.20459 0.92016 0.92789 0.88936 0.94216 1.22237 1.00359 1.01703 0.97037 1.42859 1.12592 1.33791 1.50283 1.19030 0.89757 1.09148 1.17198 0.92594 1.25482 0.97428 1.02518 1.00618 1.69884 1.16255 1.41283 1.36410 0.85451 0.79287 0.80216 0.77053 1.19867 1.23114 1.18084 0.90633 0.94008 0.89311 0.92668 0.86565 0.81600 0.81002 0.81440 0.82780 0.73877 0.93169 0.94396 0.89533 0.86798 0.90235 0.95435 0.92494 0.80286 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.49 71.98 0.61 -0.85 16 2 C -0.14 -1.92 5.61 30.60 0.17 -1.75 16 3 C 0.07 1.37 2.53 29.85 0.08 1.45 16 4 H 0.14 1.51 5.42 -2.38 -0.01 1.50 16 5 O -0.31 -8.74 8.98 -74.07 -0.67 -9.40 16 6 C 0.07 1.65 5.66 22.53 0.13 1.77 16 7 C -0.18 -2.20 7.38 22.36 0.16 -2.03 16 8 C -0.08 -0.57 10.04 22.26 0.22 -0.34 16 9 C -0.12 -1.07 10.04 22.28 0.22 -0.85 16 10 C -0.12 -1.81 10.02 22.30 0.22 -1.59 16 11 C 0.02 0.53 7.31 22.45 0.16 0.69 16 12 F -0.16 -4.96 17.11 44.97 0.77 -4.19 16 13 C 0.50 14.19 7.18 87.66 0.63 14.82 16 14 O -0.58 -24.72 16.51 15.97 0.26 -24.46 16 15 N -0.70 -15.08 5.46 -463.06 -2.53 -17.61 16 16 C 0.13 3.72 5.56 86.38 0.48 4.20 16 17 C -0.12 -2.70 4.87 30.59 0.15 -2.55 16 18 C 0.17 5.66 2.89 44.99 0.13 5.79 16 19 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 20 C -0.15 -4.56 9.49 71.98 0.68 -3.88 16 21 N -0.75 -34.04 4.38 -322.94 -1.41 -35.45 16 22 C -0.22 -12.66 10.41 84.03 0.87 -11.79 16 23 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 24 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 25 N -0.99 -65.46 13.97 21.65 0.30 -65.16 16 26 Si 0.95 47.37 27.74 68.60 1.90 49.27 16 27 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 28 H -0.30 -15.67 7.11 99.48 0.71 -14.97 16 29 H -0.26 -11.64 6.52 99.48 0.65 -10.99 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.59 6.54 -2.39 -0.02 0.57 16 32 H 0.09 0.33 6.74 -2.39 -0.02 0.31 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.12 0.93 7.77 -2.39 -0.02 0.91 16 35 H 0.17 0.96 4.28 -2.91 -0.01 0.95 16 36 H 0.17 -0.06 8.06 -2.91 -0.02 -0.08 16 37 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 38 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.42 4.57 8.18 -92.71 -0.76 3.82 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.04 1.46 7.75 -2.39 -0.02 1.45 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 43 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 45 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.36 15.91 5.66 -92.71 -0.52 15.39 16 48 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -91.23 393.96 3.68 -87.55 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -0.35 Total: 20.11 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 5.40 Total: -0.66 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -3.64 Total: -118.22 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.40 Total: -33.86 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.77 Total: -4.19 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.90 Total: 49.27 kcal Total: -91.23 3.68 -87.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267152861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.574 kcal (2) G-P(sol) polarization free energy of solvation -91.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds