Wall clock time and date at job start Tue Mar 31 2020 20:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 H 1.08996 * 109.47527 * 54.99785 * 3 2 1 5 5 O 1.42902 * 109.47057 * 294.99580 * 3 2 1 6 6 C 1.35960 * 116.99644 * 99.40061 * 5 3 2 7 7 C 1.38659 * 120.06449 * 354.33675 * 6 5 3 8 8 C 1.38183 * 119.96970 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.09246 * 0.02562 * 8 7 6 10 10 C 1.38253 * 120.12715 * 359.97438 * 9 8 7 11 11 C 1.38332 * 120.03266 * 0.25646 * 10 9 8 12 12 F 1.35090 * 120.04976 * 179.72390 * 11 10 9 13 13 C 1.50704 * 109.46862 * 175.00098 * 3 2 1 14 14 O 1.21279 * 119.99972 * 120.00111 * 13 3 2 15 15 N 1.34776 * 120.00043 * 299.99216 * 13 3 2 16 16 C 1.46495 * 120.00161 * 180.02562 * 15 13 3 17 17 C 1.52994 * 109.47203 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.47171 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.47282 * 55.00078 * 18 17 16 20 20 C 1.53006 * 109.47079 * 174.99670 * 18 17 16 21 21 N 1.46497 * 109.47175 * 294.99724 * 18 17 16 22 22 C 1.36938 * 119.99982 * 154.99743 * 21 18 17 23 23 H 1.08001 * 120.00034 * 0.02562 * 22 21 18 24 24 C 1.38808 * 120.00334 * 180.02562 * 22 21 18 25 25 N 1.31625 * 119.99613 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00502 * 180.02562 * 24 22 21 27 27 H 1.48490 * 109.47410 * 89.99404 * 26 24 22 28 28 H 1.48498 * 109.47429 * 210.00102 * 26 24 22 29 29 H 1.48509 * 109.46774 * 329.99546 * 26 24 22 30 30 H 1.08999 * 109.47177 * 300.00349 * 1 2 3 31 31 H 1.09005 * 109.47016 * 60.00224 * 1 2 3 32 32 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47177 * 239.99651 * 2 1 3 34 34 H 1.08995 * 109.47058 * 119.99748 * 2 1 3 35 35 H 1.07994 * 120.01686 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.95136 * 179.97438 * 8 7 6 37 37 H 1.08000 * 119.93126 * 179.97438 * 9 8 7 38 38 H 1.07996 * 119.98408 * 179.97438 * 10 9 8 39 39 H 0.97004 * 119.99727 * 0.02562 * 15 13 3 40 40 H 1.09007 * 109.47076 * 300.00664 * 16 15 13 41 41 H 1.09002 * 109.47321 * 59.99943 * 16 15 13 42 42 H 1.08998 * 109.47366 * 299.99806 * 17 16 15 43 43 H 1.09002 * 109.47416 * 60.00065 * 17 16 15 44 44 H 1.08999 * 109.46981 * 180.02562 * 20 18 17 45 45 H 1.08999 * 109.47235 * 300.00220 * 20 18 17 46 46 H 1.09000 * 109.46686 * 60.00625 * 20 18 17 47 47 H 0.96997 * 120.00215 * 335.00237 * 21 18 17 48 48 H 0.97001 * 119.99823 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6619 2.0814 -1.2211 6 6 0.5658 2.8849 -1.1837 7 6 -0.1989 2.9634 -0.0297 8 6 -1.3122 3.7811 0.0064 9 6 -1.6652 4.5210 -1.1070 10 6 -0.9056 4.4458 -2.2597 11 6 0.2073 3.6252 -2.3031 12 9 0.9466 3.5472 -3.4310 13 6 3.5419 1.4443 0.1238 14 8 4.2216 1.9436 -0.7477 15 7 4.1297 0.8913 1.2032 16 6 5.5897 0.8935 1.3238 17 6 5.9945 0.2090 2.6308 18 6 7.5193 0.2107 2.7565 19 1 7.8900 1.2319 2.6678 20 6 7.9194 -0.3606 4.1184 21 7 8.0980 -0.6131 1.6923 22 6 9.3786 -0.3809 1.2664 23 1 9.9621 0.4092 1.7154 24 6 9.9268 -1.1611 0.2577 25 7 9.2154 -2.1238 -0.2899 26 14 11.6739 -0.8449 -0.3228 27 1 12.6181 -1.6615 0.4813 28 1 11.7944 -1.2163 -1.7556 29 1 11.9981 0.5947 -0.1558 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.0754 2.3856 0.8405 36 1 -1.9079 3.8416 0.9052 37 1 -2.5361 5.1590 -1.0761 38 1 -1.1836 5.0244 -3.1281 39 1 3.5860 0.4917 1.9001 40 1 6.0247 0.3547 0.4819 41 1 5.9527 1.9213 1.3240 42 1 5.5596 0.7474 3.4729 43 1 5.6315 -0.8189 2.6303 44 1 9.0057 -0.3589 4.2081 45 1 7.4889 0.2524 4.9102 46 1 7.5488 -1.3818 4.2070 47 1 7.5740 -1.3229 1.2892 48 1 9.5986 -2.6692 -0.9946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267152863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:53 Heat of formation + Delta-G solvation = -86.425886 kcal Electronic energy + Delta-G solvation = -29108.630955 eV Core-core repulsion = 24885.772163 eV Total energy + Delta-G solvation = -4222.858793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.92944 -40.96384 -39.35744 -37.71830 -36.54375 -34.63547 -33.89220 -32.22489 -31.08648 -30.35677 -29.52617 -28.39094 -27.22316 -23.98064 -23.73899 -22.88038 -22.78249 -21.85103 -20.51731 -19.67587 -19.04682 -17.75577 -17.25003 -17.14296 -16.62785 -16.24139 -15.83952 -15.54126 -15.34203 -15.03985 -14.91856 -14.59940 -14.19658 -14.16303 -13.89424 -13.49268 -13.36721 -13.16781 -13.03495 -12.67167 -12.50718 -12.39851 -12.22441 -12.06717 -12.04375 -11.77829 -11.56199 -11.36735 -11.11276 -10.93981 -10.91336 -10.75119 -10.62888 -10.29897 -9.99591 -9.67428 -9.61806 -9.28883 -8.94997 -8.85716 -8.49467 -6.94355 -5.73754 -3.02594 0.74836 0.88588 2.37668 2.61329 3.20670 3.37575 3.46566 3.52110 3.53816 3.92991 4.24772 4.31960 4.38044 4.46397 4.57197 4.62370 4.75068 4.84719 4.87267 5.03102 5.13065 5.25702 5.27007 5.36814 5.51024 5.55743 5.59696 5.66012 5.66831 5.71654 5.78921 5.85638 5.86541 5.98946 6.03921 6.15617 6.26573 6.31161 6.37381 6.43060 6.61362 6.67896 6.85111 6.94908 7.04878 7.51540 7.73364 8.24372 8.44592 9.56030 10.12113 10.46523 11.48873 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.002238 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.704509 B =12510.171675 C =13351.757331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.140 4.140 3 C 0.065 3.935 4 H 0.103 0.897 5 O -0.272 6.272 6 C 0.102 3.898 7 C -0.189 4.189 8 C -0.089 4.089 9 C -0.132 4.132 10 C -0.117 4.117 11 C 0.071 3.929 12 F -0.129 7.129 13 C 0.506 3.494 14 O -0.510 6.510 15 N -0.723 5.723 16 C 0.122 3.878 17 C -0.132 4.132 18 C 0.174 3.826 19 H 0.049 0.951 20 C -0.163 4.163 21 N -0.723 5.723 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.396 0.604 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.046 0.954 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.336 9.613 5.410 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.178 4.178 3 C 0.005 3.995 4 H 0.121 0.879 5 O -0.184 6.184 6 C 0.056 3.944 7 C -0.207 4.207 8 C -0.108 4.108 9 C -0.151 4.151 10 C -0.136 4.136 11 C 0.051 3.949 12 F -0.107 7.107 13 C 0.289 3.711 14 O -0.383 6.383 15 N -0.376 5.376 16 C 0.000 4.000 17 C -0.170 4.170 18 C 0.063 3.937 19 H 0.067 0.933 20 C -0.223 4.223 21 N -0.365 5.365 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.160 0.840 39 H 0.230 0.770 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -26.472 10.002 4.486 28.652 hybrid contribution 0.691 -0.435 -0.109 0.824 sum -25.780 9.567 4.377 27.844 Atomic orbital electron populations 1.21941 0.94467 1.02787 1.02170 1.22012 0.97285 0.93716 1.04751 1.22496 0.93814 0.95429 0.87770 0.87923 1.86316 1.41499 1.57866 1.32696 1.19124 0.88717 0.92480 0.94109 1.21300 0.97787 1.04006 0.97648 1.21003 0.95917 0.95124 0.98721 1.20931 1.00578 1.01040 0.92503 1.21056 0.93688 0.98579 1.00240 1.17045 0.94150 1.01157 0.82541 1.91539 1.75739 1.95161 1.48273 1.20135 0.88877 0.79399 0.82657 1.90801 1.64713 1.43594 1.39207 1.46012 1.09040 1.60222 1.22359 1.21512 0.77028 1.01587 0.99874 1.22061 0.98750 1.00568 0.95656 1.20153 0.89205 0.95300 0.88995 0.93273 1.22426 1.01720 1.00248 0.97946 1.42446 1.14229 1.38971 1.40894 1.19211 0.90051 1.13189 1.14491 0.91214 1.24729 0.98326 0.98508 0.99327 1.69653 1.36471 1.22717 1.29227 0.86214 0.84706 0.77571 0.77856 1.21830 1.21794 1.20760 0.92301 0.92099 0.91605 0.89602 0.89389 0.84044 0.85007 0.84862 0.84042 0.77049 0.89483 0.91655 0.91892 0.91526 0.92699 0.94590 0.93519 0.78294 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.48 37.16 0.32 -0.76 16 2 C -0.14 -1.22 5.59 -26.73 -0.15 -1.37 16 3 C 0.06 0.72 2.54 -27.88 -0.07 0.64 16 4 H 0.10 0.81 5.43 -51.93 -0.28 0.53 16 5 O -0.27 -3.81 8.98 -39.53 -0.35 -4.16 16 6 C 0.10 1.18 5.66 -39.18 -0.22 0.96 16 7 C -0.19 -1.52 7.36 -39.45 -0.29 -1.81 16 8 C -0.09 -0.57 10.04 -39.59 -0.40 -0.96 16 9 C -0.13 -0.85 10.04 -39.57 -0.40 -1.25 16 10 C -0.12 -0.98 10.02 -39.54 -0.40 -1.38 16 11 C 0.07 0.84 7.31 -39.30 -0.29 0.55 16 12 F -0.13 -1.85 17.11 2.25 0.04 -1.81 16 13 C 0.51 7.61 7.23 -10.98 -0.08 7.53 16 14 O -0.51 -10.60 16.50 -14.35 -0.24 -10.84 16 15 N -0.72 -9.19 5.42 -60.30 -0.33 -9.52 16 16 C 0.12 1.98 5.56 -4.05 -0.02 1.96 16 17 C -0.13 -1.92 4.87 -26.73 -0.13 -2.05 16 18 C 0.17 3.26 2.89 -67.93 -0.20 3.07 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 C -0.16 -2.78 9.49 37.16 0.35 -2.43 16 21 N -0.72 -17.58 4.57 -53.42 -0.24 -17.83 16 22 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 26 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 30 H 0.06 0.29 6.73 -51.93 -0.35 -0.05 16 31 H 0.06 0.51 6.53 -51.93 -0.34 0.17 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.58 7.43 -51.93 -0.39 0.20 16 35 H 0.14 0.84 4.27 -52.49 -0.22 0.62 16 36 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 37 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.40 3.43 7.83 -40.82 -0.32 3.11 16 40 H 0.09 1.79 7.75 -51.93 -0.40 1.39 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -35.63 396.32 -8.90 -44.54 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.24 Total: 8.02 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.22 Total: -4.49 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.15 Total: -55.01 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.59 Total: -15.00 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.63 -8.90 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267152863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.888 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds