Wall clock time and date at job start Tue Mar 31 2020 20:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46907 * 2 1 4 4 H 1.08996 * 109.47527 * 54.99785 * 3 2 1 5 5 O 1.42902 * 109.47057 * 294.99580 * 3 2 1 6 6 C 1.35960 * 116.99644 * 99.40061 * 5 3 2 7 7 C 1.38659 * 120.06449 * 354.33675 * 6 5 3 8 8 C 1.38183 * 119.96970 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.09246 * 0.02562 * 8 7 6 10 10 C 1.38253 * 120.12715 * 359.97438 * 9 8 7 11 11 C 1.38332 * 120.03266 * 0.25646 * 10 9 8 12 12 F 1.35090 * 120.04976 * 179.72390 * 11 10 9 13 13 C 1.50704 * 109.46862 * 175.00098 * 3 2 1 14 14 O 1.21279 * 119.99972 * 120.00111 * 13 3 2 15 15 N 1.34776 * 120.00043 * 299.99216 * 13 3 2 16 16 C 1.46495 * 120.00161 * 180.02562 * 15 13 3 17 17 C 1.52994 * 109.47203 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.47171 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.47282 * 55.00078 * 18 17 16 20 20 C 1.53006 * 109.47079 * 174.99670 * 18 17 16 21 21 N 1.46497 * 109.47175 * 294.99724 * 18 17 16 22 22 C 1.36938 * 119.99982 * 154.99743 * 21 18 17 23 23 H 1.08001 * 120.00034 * 0.02562 * 22 21 18 24 24 C 1.38808 * 120.00334 * 180.02562 * 22 21 18 25 25 N 1.31625 * 119.99613 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00502 * 180.02562 * 24 22 21 27 27 H 1.48490 * 109.47410 * 89.99404 * 26 24 22 28 28 H 1.48498 * 109.47429 * 210.00102 * 26 24 22 29 29 H 1.48509 * 109.46774 * 329.99546 * 26 24 22 30 30 H 1.08999 * 109.47177 * 300.00349 * 1 2 3 31 31 H 1.09005 * 109.47016 * 60.00224 * 1 2 3 32 32 H 1.08998 * 109.47476 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47177 * 239.99651 * 2 1 3 34 34 H 1.08995 * 109.47058 * 119.99748 * 2 1 3 35 35 H 1.07994 * 120.01686 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.95136 * 179.97438 * 8 7 6 37 37 H 1.08000 * 119.93126 * 179.97438 * 9 8 7 38 38 H 1.07996 * 119.98408 * 179.97438 * 10 9 8 39 39 H 0.97004 * 119.99727 * 0.02562 * 15 13 3 40 40 H 1.09007 * 109.47076 * 300.00664 * 16 15 13 41 41 H 1.09002 * 109.47321 * 59.99943 * 16 15 13 42 42 H 1.08998 * 109.47366 * 299.99806 * 17 16 15 43 43 H 1.09002 * 109.47416 * 60.00065 * 17 16 15 44 44 H 1.08999 * 109.46981 * 180.02562 * 20 18 17 45 45 H 1.08999 * 109.47235 * 300.00220 * 20 18 17 46 46 H 1.09000 * 109.46686 * 60.00625 * 20 18 17 47 47 H 0.96997 * 120.00215 * 335.00237 * 21 18 17 48 48 H 0.97001 * 119.99823 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 8 1.6619 2.0814 -1.2211 6 6 0.5658 2.8849 -1.1837 7 6 -0.1989 2.9634 -0.0297 8 6 -1.3122 3.7811 0.0064 9 6 -1.6652 4.5210 -1.1070 10 6 -0.9056 4.4458 -2.2597 11 6 0.2073 3.6252 -2.3031 12 9 0.9466 3.5472 -3.4310 13 6 3.5419 1.4443 0.1238 14 8 4.2216 1.9436 -0.7477 15 7 4.1297 0.8913 1.2032 16 6 5.5897 0.8935 1.3238 17 6 5.9945 0.2090 2.6308 18 6 7.5193 0.2107 2.7565 19 1 7.8900 1.2319 2.6678 20 6 7.9194 -0.3606 4.1184 21 7 8.0980 -0.6131 1.6923 22 6 9.3786 -0.3809 1.2664 23 1 9.9621 0.4092 1.7154 24 6 9.9268 -1.1611 0.2577 25 7 9.2154 -2.1238 -0.2899 26 14 11.6739 -0.8449 -0.3228 27 1 12.6181 -1.6615 0.4813 28 1 11.7944 -1.2163 -1.7556 29 1 11.9981 0.5947 -0.1558 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.0754 2.3856 0.8405 36 1 -1.9079 3.8416 0.9052 37 1 -2.5361 5.1590 -1.0761 38 1 -1.1836 5.0244 -3.1281 39 1 3.5860 0.4917 1.9001 40 1 6.0247 0.3547 0.4819 41 1 5.9527 1.9213 1.3240 42 1 5.5596 0.7474 3.4729 43 1 5.6315 -0.8189 2.6303 44 1 9.0057 -0.3589 4.2081 45 1 7.4889 0.2524 4.9102 46 1 7.5488 -1.3818 4.2070 47 1 7.5740 -1.3229 1.2892 48 1 9.5986 -2.6692 -0.9946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267152863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:52 Heat of formation + Delta-G solvation = -110.494834 kcal Electronic energy + Delta-G solvation = -29109.674663 eV Core-core repulsion = 24885.772163 eV Total energy + Delta-G solvation = -4223.902501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.85614 -41.85658 -40.40222 -38.54399 -38.04258 -36.00834 -34.85277 -34.03294 -31.71536 -31.21360 -30.93139 -29.86102 -28.16237 -25.85421 -24.53169 -24.07214 -23.48603 -22.81931 -21.73802 -21.03071 -19.82038 -19.31147 -18.65210 -18.00898 -17.49583 -17.15512 -16.96949 -16.84338 -16.48594 -16.09006 -15.93379 -15.56710 -15.48339 -15.37262 -15.28289 -14.79845 -14.50178 -14.21198 -14.09336 -13.80284 -13.57011 -13.39713 -13.25588 -13.12933 -12.93124 -12.83037 -12.64996 -12.63699 -12.38046 -12.31143 -12.24155 -12.14060 -12.02686 -11.64509 -11.60999 -11.57906 -10.97532 -10.85799 -10.20197 -9.91843 -9.22995 -8.98180 -7.94006 -5.20257 0.12891 0.24586 1.37059 1.44014 1.46135 1.53675 1.55065 2.40416 2.55829 2.61063 3.24826 3.40461 3.43060 3.54358 3.66058 3.80905 3.91492 3.93890 3.99690 4.16669 4.20865 4.29817 4.34577 4.36261 4.38754 4.53490 4.66828 4.70482 4.77228 4.88500 4.93448 5.00639 5.02858 5.09718 5.10187 5.10954 5.20224 5.26593 5.31940 5.36638 5.40868 5.43139 5.53558 5.63011 5.68412 6.20129 6.29515 6.47652 7.14444 7.35440 8.14301 8.34597 9.29576 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.002238 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.704509 B =12510.171675 C =13351.757331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.072 3.928 4 H 0.143 0.857 5 O -0.313 6.313 6 C 0.075 3.925 7 C -0.185 4.185 8 C -0.078 4.078 9 C -0.124 4.124 10 C -0.118 4.118 11 C 0.022 3.978 12 F -0.159 7.159 13 C 0.499 3.501 14 O -0.581 6.581 15 N -0.700 5.700 16 C 0.132 3.868 17 C -0.114 4.114 18 C 0.162 3.838 19 H 0.041 0.959 20 C -0.152 4.152 21 N -0.735 5.735 22 C -0.231 4.231 23 H 0.074 0.926 24 C -0.080 4.080 25 N -0.970 5.970 26 Si 0.965 3.035 27 H -0.285 1.285 28 H -0.300 1.300 29 H -0.272 1.272 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.115 0.885 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.169 0.831 38 H 0.155 0.845 39 H 0.421 0.579 40 H 0.034 0.966 41 H 0.050 0.950 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.031 0.969 45 H 0.077 0.923 46 H 0.046 0.954 47 H 0.372 0.628 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.519 10.646 9.313 33.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.013 3.987 4 H 0.160 0.840 5 O -0.227 6.227 6 C 0.029 3.971 7 C -0.203 4.203 8 C -0.095 4.095 9 C -0.142 4.142 10 C -0.137 4.137 11 C 0.002 3.998 12 F -0.138 7.138 13 C 0.285 3.715 14 O -0.459 6.459 15 N -0.354 5.354 16 C 0.008 3.992 17 C -0.152 4.152 18 C 0.053 3.947 19 H 0.059 0.941 20 C -0.212 4.212 21 N -0.376 5.376 22 C -0.363 4.363 23 H 0.092 0.908 24 C -0.272 4.272 25 N -0.621 5.621 26 Si 0.795 3.205 27 H -0.212 1.212 28 H -0.227 1.227 29 H -0.197 1.197 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.183 0.817 36 H 0.190 0.810 37 H 0.186 0.814 38 H 0.173 0.827 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.129 0.871 43 H 0.094 0.906 44 H 0.050 0.950 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.204 0.796 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -29.700 11.050 8.485 32.805 hybrid contribution 1.558 -0.642 -1.237 2.091 sum -28.142 10.407 7.248 30.868 Atomic orbital electron populations 1.21920 0.92526 1.03641 1.02688 1.22058 0.98896 0.91914 1.04562 1.22615 0.90406 0.97212 0.88475 0.84035 1.86261 1.43125 1.58938 1.34354 1.19452 0.89047 0.93084 0.95506 1.21595 0.97652 1.04247 0.96816 1.21526 0.94966 0.93148 0.99903 1.21414 1.00714 1.00606 0.91439 1.21348 0.92705 0.97781 1.01868 1.17710 0.95906 1.03772 0.82364 1.91445 1.76812 1.95633 1.49908 1.21070 0.90817 0.77862 0.81778 1.90767 1.66663 1.46765 1.41731 1.45720 1.07797 1.59343 1.22557 1.21155 0.78902 1.00080 0.99076 1.21917 0.95663 1.01633 0.95977 1.20488 0.91861 0.93906 0.88401 0.94121 1.22254 1.00418 1.00951 0.97594 1.42657 1.13281 1.39378 1.42301 1.19592 0.91287 1.12054 1.13400 0.90840 1.25489 1.02058 0.99196 1.00443 1.69805 1.38000 1.24176 1.30161 0.85247 0.80730 0.77822 0.76688 1.21180 1.22744 1.19720 0.89305 0.93953 0.90613 0.92687 0.86675 0.81685 0.80992 0.81380 0.82726 0.74045 0.94770 0.93123 0.87115 0.90551 0.95018 0.90400 0.93488 0.79632 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.48 71.98 0.61 -1.08 16 2 C -0.14 -2.21 5.59 30.59 0.17 -2.03 16 3 C 0.07 1.54 2.54 29.85 0.08 1.62 16 4 H 0.14 1.79 5.43 -2.39 -0.01 1.78 16 5 O -0.31 -9.26 8.98 -74.06 -0.66 -9.93 16 6 C 0.07 1.74 5.66 22.53 0.13 1.87 16 7 C -0.19 -2.43 7.36 22.36 0.16 -2.27 16 8 C -0.08 -0.64 10.04 22.26 0.22 -0.41 16 9 C -0.12 -1.16 10.04 22.28 0.22 -0.94 16 10 C -0.12 -1.89 10.02 22.30 0.22 -1.67 16 11 C 0.02 0.55 7.31 22.45 0.16 0.72 16 12 F -0.16 -5.12 17.11 44.97 0.77 -4.35 16 13 C 0.50 15.38 7.23 87.66 0.63 16.02 16 14 O -0.58 -26.05 16.50 16.01 0.26 -25.79 16 15 N -0.70 -17.14 5.42 -463.07 -2.51 -19.64 16 16 C 0.13 4.31 5.56 86.38 0.48 4.79 16 17 C -0.11 -3.04 4.87 30.59 0.15 -2.89 16 18 C 0.16 5.90 2.89 44.99 0.13 6.03 16 19 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 20 C -0.15 -4.81 9.49 71.98 0.68 -4.13 16 21 N -0.74 -36.38 4.57 -322.94 -1.48 -37.86 16 22 C -0.23 -12.99 9.93 84.03 0.83 -12.16 16 23 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 25 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16 26 Si 0.97 48.07 29.55 68.60 2.03 50.10 16 27 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 28 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 29 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 30 H 0.09 0.46 6.73 -2.39 -0.02 0.44 16 31 H 0.04 0.66 6.53 -2.38 -0.02 0.64 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.12 1.18 7.43 -2.39 -0.02 1.16 16 35 H 0.17 1.20 4.27 -2.91 -0.01 1.18 16 36 H 0.17 0.09 8.06 -2.91 -0.02 0.07 16 37 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 38 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.42 5.91 7.83 -92.71 -0.73 5.18 16 40 H 0.03 1.49 7.75 -2.38 -0.02 1.47 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.37 19.89 7.80 -92.71 -0.72 19.17 16 48 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -87.29 396.32 3.60 -83.69 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.46 Total: 25.54 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.36 Total: -0.82 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -3.70 Total: -118.45 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.40 Total: -35.71 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.77 Total: -4.35 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -87.29 3.60 -83.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267152863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.804 kcal (2) G-P(sol) polarization free energy of solvation -87.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds