Wall clock time and date at job start Tue Mar 31 2020 20:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.09004 * 109.47316 * 305.00034 * 3 2 1 5 5 O 1.42902 * 109.47458 * 64.99797 * 3 2 1 6 6 C 1.35956 * 117.00118 * 260.44103 * 5 3 2 7 7 C 1.38662 * 120.06314 * 5.66522 * 6 5 3 8 8 C 1.38181 * 119.96670 * 179.72384 * 7 6 5 9 9 C 1.38261 * 120.09654 * 0.55262 * 8 7 6 10 10 C 1.38264 * 120.12585 * 359.72531 * 9 8 7 11 11 C 1.38337 * 120.02633 * 359.97438 * 10 9 8 12 12 F 1.35094 * 120.04136 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47170 * 185.00012 * 3 2 1 14 14 O 1.21278 * 119.99871 * 245.00465 * 13 3 2 15 15 N 1.34772 * 119.99673 * 64.99897 * 13 3 2 16 16 C 1.46509 * 119.99851 * 180.02562 * 15 13 3 17 17 C 1.52992 * 109.47073 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.46832 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.46935 * 55.00676 * 18 17 16 20 20 C 1.53004 * 109.47248 * 175.00075 * 18 17 16 21 21 N 1.46495 * 109.47467 * 295.00213 * 18 17 16 22 22 C 1.36943 * 119.99983 * 154.99926 * 21 18 17 23 23 H 1.07997 * 119.99940 * 0.02562 * 22 21 18 24 24 C 1.38813 * 119.99725 * 180.02562 * 22 21 18 25 25 N 1.31622 * 120.00283 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99661 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47213 * 89.99962 * 26 24 22 28 28 H 1.48501 * 109.47219 * 209.99632 * 26 24 22 29 29 H 1.48502 * 109.47266 * 329.99733 * 26 24 22 30 30 H 1.09000 * 109.46898 * 59.99756 * 1 2 3 31 31 H 1.08994 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46731 * 300.00214 * 1 2 3 33 33 H 1.09000 * 109.46898 * 120.00244 * 2 1 3 34 34 H 1.08997 * 109.46950 * 239.99319 * 2 1 3 35 35 H 1.08000 * 120.01072 * 359.97438 * 7 6 5 36 36 H 1.08005 * 119.94795 * 180.27580 * 8 7 6 37 37 H 1.08002 * 119.93828 * 179.74458 * 9 8 7 38 38 H 1.07996 * 119.97968 * 179.97438 * 10 9 8 39 39 H 0.96994 * 120.00473 * 359.97438 * 15 13 3 40 40 H 1.08999 * 109.46400 * 300.00140 * 16 15 13 41 41 H 1.08998 * 109.46805 * 59.99700 * 16 15 13 42 42 H 1.08994 * 109.47494 * 299.99775 * 17 16 15 43 43 H 1.08998 * 109.47291 * 60.00315 * 17 16 15 44 44 H 1.08994 * 109.47077 * 180.02562 * 20 18 17 45 45 H 1.09001 * 109.46924 * 300.00373 * 20 18 17 46 46 H 1.09005 * 109.46664 * 59.99879 * 20 18 17 47 47 H 0.96998 * 120.00218 * 335.00400 * 21 18 17 48 48 H 0.96999 * 119.99812 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 0.5680 2.8877 1.1828 7 6 -0.1951 2.9688 0.0279 8 6 -1.3099 3.7845 -0.0070 9 6 -1.6592 4.5289 1.1045 10 6 -0.8978 4.4555 2.2563 11 6 0.2157 3.6358 2.2989 12 9 0.9596 3.5634 3.4242 13 6 3.5420 1.4442 -0.1238 14 8 4.2251 1.8609 0.7875 15 7 4.1260 0.9827 -1.2473 16 6 5.5862 0.9839 -1.3676 17 6 5.9862 0.4126 -2.7293 18 6 7.5111 0.4144 -2.8550 19 1 7.9457 -0.1244 -2.0130 20 6 7.9159 -0.2701 -4.1621 21 7 7.9994 1.7956 -2.8555 22 6 9.2783 2.0698 -2.4500 23 1 9.9271 1.2678 -2.1302 24 6 9.7408 3.3786 -2.4499 25 7 8.9503 4.3560 -2.8402 26 14 11.4856 3.7526 -1.8975 27 1 12.3988 3.6924 -3.0669 28 1 11.5353 5.1112 -1.3002 29 1 11.9099 2.7514 -0.8860 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 0.0795 2.3915 -0.8426 36 1 -1.9066 3.8440 -0.9052 37 1 -2.5287 5.1688 1.0731 38 1 -1.1726 5.0383 3.1229 39 1 3.5797 0.6490 -1.9761 40 1 5.9571 2.0049 -1.2782 41 1 6.0163 0.3704 -0.5759 42 1 5.6153 -0.6084 -2.8182 43 1 5.5560 1.0257 -3.5211 44 1 9.0022 -0.2691 -4.2515 45 1 7.5526 -1.2977 -4.1618 46 1 7.4812 0.2687 -5.0041 47 1 7.4168 2.5159 -3.1430 48 1 9.2737 5.2705 -2.8405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267152864.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:58 Heat of formation + Delta-G solvation = -86.665532 kcal Electronic energy + Delta-G solvation = -29134.346205 eV Core-core repulsion = 24911.477021 eV Total energy + Delta-G solvation = -4222.869185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.90848 -40.94887 -39.34435 -37.70104 -36.54304 -34.61271 -33.92529 -32.23088 -31.05478 -30.33827 -29.53049 -28.39322 -27.22683 -23.96827 -23.74691 -22.88016 -22.77881 -21.82450 -20.53566 -19.67276 -19.02727 -17.73476 -17.25499 -17.12342 -16.61380 -16.24197 -15.82875 -15.56600 -15.22341 -15.12334 -14.90294 -14.58814 -14.20961 -14.16629 -13.88187 -13.49609 -13.35538 -13.15977 -13.02927 -12.68926 -12.50564 -12.38835 -12.23738 -12.06327 -12.02355 -11.78000 -11.56087 -11.37942 -11.10397 -10.96773 -10.91027 -10.75099 -10.63045 -10.29960 -9.99698 -9.67303 -9.61867 -9.25722 -8.95038 -8.85846 -8.47186 -6.94583 -5.74032 -3.02845 0.78196 0.91527 2.40722 2.58770 3.24071 3.38020 3.46391 3.51989 3.53643 3.95544 4.25820 4.33859 4.37014 4.49326 4.57925 4.62200 4.73254 4.88092 4.89312 5.00427 5.14640 5.24124 5.26367 5.36847 5.48251 5.55687 5.58262 5.66007 5.67477 5.70179 5.80922 5.83847 5.85818 6.02405 6.03987 6.15653 6.28766 6.31378 6.37294 6.43032 6.61414 6.67800 6.85105 6.96275 7.04852 7.51788 7.73220 8.24571 8.44315 9.55774 10.11881 10.46251 11.48612 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.002380 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.248010 B =11760.720855 C =12917.649722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.137 4.137 3 C 0.064 3.936 4 H 0.104 0.896 5 O -0.273 6.273 6 C 0.102 3.898 7 C -0.188 4.188 8 C -0.089 4.089 9 C -0.131 4.131 10 C -0.117 4.117 11 C 0.071 3.929 12 F -0.129 7.129 13 C 0.506 3.494 14 O -0.509 6.509 15 N -0.723 5.723 16 C 0.122 3.878 17 C -0.132 4.132 18 C 0.174 3.826 19 H 0.049 0.951 20 C -0.163 4.163 21 N -0.724 5.724 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.396 0.604 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.046 0.954 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.669 -7.370 2.797 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.175 4.175 3 C 0.004 3.996 4 H 0.121 0.879 5 O -0.184 6.184 6 C 0.055 3.945 7 C -0.207 4.207 8 C -0.107 4.107 9 C -0.150 4.150 10 C -0.136 4.136 11 C 0.051 3.949 12 F -0.108 7.108 13 C 0.289 3.711 14 O -0.383 6.383 15 N -0.376 5.376 16 C 0.000 4.000 17 C -0.170 4.170 18 C 0.063 3.937 19 H 0.067 0.933 20 C -0.223 4.223 21 N -0.366 5.366 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.229 0.771 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.800 -7.102 3.779 27.025 hybrid contribution 0.669 0.362 -0.276 0.809 sum -25.131 -6.740 3.504 26.254 Atomic orbital electron populations 1.21943 0.94438 1.02704 1.02328 1.21982 0.97320 0.93751 1.04467 1.22495 0.93836 0.95384 0.87905 0.87897 1.86301 1.41766 1.57767 1.32612 1.19110 0.88748 0.92500 0.94155 1.21299 0.97744 1.04069 0.97541 1.21007 0.95911 0.95082 0.98724 1.20938 1.00625 1.00897 0.92513 1.21059 0.93667 0.98586 1.00255 1.17037 0.94072 1.01056 0.82708 1.91535 1.75504 1.95210 1.48513 1.20132 0.88901 0.78830 0.83198 1.90800 1.64517 1.44359 1.38602 1.46008 1.09040 1.64929 1.17672 1.21512 0.76972 1.03734 0.97769 1.22059 0.98864 1.00194 0.95914 1.20154 0.89777 0.88205 0.95515 0.93259 1.22426 1.01832 0.98123 0.99956 1.42449 1.13466 1.01551 1.79086 1.19216 0.89493 0.92233 1.36002 0.91201 1.24727 0.98132 0.95757 1.02256 1.69652 1.35398 0.99247 1.53793 0.86215 0.84599 0.77402 0.78137 1.21826 1.21799 1.20750 0.92196 0.91685 0.92058 0.89827 0.89462 0.84043 0.84967 0.84836 0.84033 0.77063 0.89540 0.91604 0.91858 0.91561 0.92698 0.94580 0.93529 0.78309 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 8.49 37.16 0.32 -0.69 16 2 C -0.14 -1.10 5.61 -26.73 -0.15 -1.25 16 3 C 0.06 0.70 2.53 -27.88 -0.07 0.63 16 4 H 0.10 0.87 5.42 -51.93 -0.28 0.58 16 5 O -0.27 -3.83 8.98 -39.46 -0.35 -4.19 16 6 C 0.10 1.21 5.66 -39.18 -0.22 0.99 16 7 C -0.19 -1.61 7.38 -39.45 -0.29 -1.90 16 8 C -0.09 -0.61 10.04 -39.59 -0.40 -1.01 16 9 C -0.13 -0.92 10.04 -39.56 -0.40 -1.31 16 10 C -0.12 -1.03 10.02 -39.54 -0.40 -1.43 16 11 C 0.07 0.87 7.31 -39.30 -0.29 0.58 16 12 F -0.13 -1.88 17.11 2.25 0.04 -1.84 16 13 C 0.51 7.62 7.18 -10.99 -0.08 7.54 16 14 O -0.51 -10.61 16.51 -14.30 -0.24 -10.84 16 15 N -0.72 -9.21 5.46 -60.29 -0.33 -9.53 16 16 C 0.12 1.99 5.56 -4.04 -0.02 1.96 16 17 C -0.13 -1.92 4.87 -26.73 -0.13 -2.05 16 18 C 0.17 3.27 2.89 -67.93 -0.20 3.07 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 C -0.16 -2.78 9.49 37.16 0.35 -2.43 16 21 N -0.72 -17.59 4.57 -53.42 -0.24 -17.84 16 22 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 26 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 30 H 0.06 0.29 6.74 -51.93 -0.35 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.51 7.77 -51.93 -0.40 0.10 16 35 H 0.14 0.91 4.28 -52.49 -0.22 0.69 16 36 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.40 3.43 8.18 -40.82 -0.33 3.10 16 40 H 0.09 1.78 7.75 -51.93 -0.40 1.38 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -35.65 397.08 -8.93 -44.58 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.27 Total: 8.06 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.22 Total: -4.49 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.15 Total: -55.03 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.59 Total: -15.03 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.65 -8.93 -44.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267152864.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.087 kcal (2) G-P(sol) polarization free energy of solvation -35.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds