Wall clock time and date at job start Tue Mar 31 2020 20:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.09004 * 109.47316 * 305.00034 * 3 2 1 5 5 O 1.42902 * 109.47458 * 64.99797 * 3 2 1 6 6 C 1.35956 * 117.00118 * 260.44103 * 5 3 2 7 7 C 1.38662 * 120.06314 * 5.66522 * 6 5 3 8 8 C 1.38181 * 119.96670 * 179.72384 * 7 6 5 9 9 C 1.38261 * 120.09654 * 0.55262 * 8 7 6 10 10 C 1.38264 * 120.12585 * 359.72531 * 9 8 7 11 11 C 1.38337 * 120.02633 * 359.97438 * 10 9 8 12 12 F 1.35094 * 120.04136 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47170 * 185.00012 * 3 2 1 14 14 O 1.21278 * 119.99871 * 245.00465 * 13 3 2 15 15 N 1.34772 * 119.99673 * 64.99897 * 13 3 2 16 16 C 1.46509 * 119.99851 * 180.02562 * 15 13 3 17 17 C 1.52992 * 109.47073 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.46832 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.46935 * 55.00676 * 18 17 16 20 20 C 1.53004 * 109.47248 * 175.00075 * 18 17 16 21 21 N 1.46495 * 109.47467 * 295.00213 * 18 17 16 22 22 C 1.36943 * 119.99983 * 154.99926 * 21 18 17 23 23 H 1.07997 * 119.99940 * 0.02562 * 22 21 18 24 24 C 1.38813 * 119.99725 * 180.02562 * 22 21 18 25 25 N 1.31622 * 120.00283 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99661 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47213 * 89.99962 * 26 24 22 28 28 H 1.48501 * 109.47219 * 209.99632 * 26 24 22 29 29 H 1.48502 * 109.47266 * 329.99733 * 26 24 22 30 30 H 1.09000 * 109.46898 * 59.99756 * 1 2 3 31 31 H 1.08994 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46731 * 300.00214 * 1 2 3 33 33 H 1.09000 * 109.46898 * 120.00244 * 2 1 3 34 34 H 1.08997 * 109.46950 * 239.99319 * 2 1 3 35 35 H 1.08000 * 120.01072 * 359.97438 * 7 6 5 36 36 H 1.08005 * 119.94795 * 180.27580 * 8 7 6 37 37 H 1.08002 * 119.93828 * 179.74458 * 9 8 7 38 38 H 1.07996 * 119.97968 * 179.97438 * 10 9 8 39 39 H 0.96994 * 120.00473 * 359.97438 * 15 13 3 40 40 H 1.08999 * 109.46400 * 300.00140 * 16 15 13 41 41 H 1.08998 * 109.46805 * 59.99700 * 16 15 13 42 42 H 1.08994 * 109.47494 * 299.99775 * 17 16 15 43 43 H 1.08998 * 109.47291 * 60.00315 * 17 16 15 44 44 H 1.08994 * 109.47077 * 180.02562 * 20 18 17 45 45 H 1.09001 * 109.46924 * 300.00373 * 20 18 17 46 46 H 1.09005 * 109.46664 * 59.99879 * 20 18 17 47 47 H 0.96998 * 120.00218 * 335.00400 * 21 18 17 48 48 H 0.96999 * 119.99812 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 0.5680 2.8877 1.1828 7 6 -0.1951 2.9688 0.0279 8 6 -1.3099 3.7845 -0.0070 9 6 -1.6592 4.5289 1.1045 10 6 -0.8978 4.4555 2.2563 11 6 0.2157 3.6358 2.2989 12 9 0.9596 3.5634 3.4242 13 6 3.5420 1.4442 -0.1238 14 8 4.2251 1.8609 0.7875 15 7 4.1260 0.9827 -1.2473 16 6 5.5862 0.9839 -1.3676 17 6 5.9862 0.4126 -2.7293 18 6 7.5111 0.4144 -2.8550 19 1 7.9457 -0.1244 -2.0130 20 6 7.9159 -0.2701 -4.1621 21 7 7.9994 1.7956 -2.8555 22 6 9.2783 2.0698 -2.4500 23 1 9.9271 1.2678 -2.1302 24 6 9.7408 3.3786 -2.4499 25 7 8.9503 4.3560 -2.8402 26 14 11.4856 3.7526 -1.8975 27 1 12.3988 3.6924 -3.0669 28 1 11.5353 5.1112 -1.3002 29 1 11.9099 2.7514 -0.8860 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 0.0795 2.3915 -0.8426 36 1 -1.9066 3.8440 -0.9052 37 1 -2.5287 5.1688 1.0731 38 1 -1.1726 5.0383 3.1229 39 1 3.5797 0.6490 -1.9761 40 1 5.9571 2.0049 -1.2782 41 1 6.0163 0.3704 -0.5759 42 1 5.6153 -0.6084 -2.8182 43 1 5.5560 1.0257 -3.5211 44 1 9.0022 -0.2691 -4.2515 45 1 7.5526 -1.2977 -4.1618 46 1 7.4812 0.2687 -5.0041 47 1 7.4168 2.5159 -3.1430 48 1 9.2737 5.2705 -2.8405 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267152864.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:57 Heat of formation + Delta-G solvation = -110.667972 kcal Electronic energy + Delta-G solvation = -29135.387029 eV Core-core repulsion = 24911.477021 eV Total energy + Delta-G solvation = -4223.910009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.86192 -41.85318 -40.40394 -38.54860 -38.04213 -35.99144 -34.84209 -34.04121 -31.72114 -31.22056 -30.93630 -29.86361 -28.16097 -25.85387 -24.53207 -24.08715 -23.49528 -22.78536 -21.75444 -21.03082 -19.82628 -19.31129 -18.64188 -18.01577 -17.49681 -17.16242 -17.01588 -16.79765 -16.49115 -16.09688 -15.91260 -15.60401 -15.52728 -15.36614 -15.23113 -14.79229 -14.50281 -14.20404 -14.10931 -13.79805 -13.57032 -13.40129 -13.25814 -13.11585 -12.93087 -12.82945 -12.65688 -12.63841 -12.37866 -12.31323 -12.23643 -12.14736 -12.01885 -11.64615 -11.61209 -11.57460 -10.97415 -10.85676 -10.20269 -9.92749 -9.23809 -8.98072 -7.93956 -5.20165 0.11922 0.23484 1.41305 1.44254 1.46268 1.50275 1.53829 2.40489 2.55940 2.60039 3.23768 3.40538 3.43158 3.54884 3.67397 3.80539 3.91505 3.93219 3.99780 4.17795 4.21396 4.29273 4.34323 4.35492 4.39822 4.52836 4.66857 4.72560 4.77266 4.88488 4.92853 5.00896 5.03003 5.08756 5.10150 5.10999 5.20206 5.25473 5.33362 5.36558 5.40839 5.42273 5.53679 5.62939 5.67178 6.18852 6.29628 6.47841 7.14561 7.35597 8.14267 8.34715 9.29621 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.002380 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.248010 B =11760.720855 C =12917.649722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C 0.069 3.931 4 H 0.135 0.865 5 O -0.312 6.312 6 C 0.075 3.925 7 C -0.186 4.186 8 C -0.079 4.079 9 C -0.124 4.124 10 C -0.119 4.119 11 C 0.023 3.977 12 F -0.158 7.158 13 C 0.499 3.501 14 O -0.580 6.580 15 N -0.700 5.700 16 C 0.132 3.868 17 C -0.114 4.114 18 C 0.162 3.838 19 H 0.040 0.960 20 C -0.152 4.152 21 N -0.735 5.735 22 C -0.232 4.232 23 H 0.073 0.927 24 C -0.079 4.079 25 N -0.970 5.970 26 Si 0.965 3.035 27 H -0.285 1.285 28 H -0.300 1.300 29 H -0.273 1.273 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.117 0.883 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.156 0.844 39 H 0.421 0.579 40 H 0.034 0.966 41 H 0.050 0.950 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.031 0.969 45 H 0.077 0.923 46 H 0.046 0.954 47 H 0.372 0.628 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.631 -9.060 0.262 30.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.010 3.990 4 H 0.152 0.848 5 O -0.225 6.225 6 C 0.029 3.971 7 C -0.204 4.204 8 C -0.097 4.097 9 C -0.142 4.142 10 C -0.137 4.137 11 C 0.003 3.997 12 F -0.137 7.137 13 C 0.285 3.715 14 O -0.459 6.459 15 N -0.354 5.354 16 C 0.008 3.992 17 C -0.152 4.152 18 C 0.054 3.946 19 H 0.058 0.942 20 C -0.212 4.212 21 N -0.376 5.376 22 C -0.364 4.364 23 H 0.091 0.909 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.795 3.205 27 H -0.212 1.212 28 H -0.227 1.227 29 H -0.198 1.198 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.182 0.818 36 H 0.189 0.811 37 H 0.186 0.814 38 H 0.174 0.826 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.129 0.871 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.204 0.796 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -28.802 -8.877 1.196 30.163 hybrid contribution 1.482 0.834 0.504 1.774 sum -27.320 -8.042 1.700 28.530 Atomic orbital electron populations 1.21926 0.92772 1.03701 1.02527 1.22026 0.98650 0.91381 1.04854 1.22651 0.90426 0.97629 0.88290 0.84799 1.86245 1.43238 1.58767 1.34281 1.19430 0.89108 0.93086 0.95469 1.21597 0.97663 1.04355 0.96791 1.21522 0.95037 0.93230 0.99891 1.21416 1.00801 1.00504 0.91475 1.21358 0.92712 0.97809 1.01847 1.17687 0.95790 1.03588 0.82591 1.91445 1.76533 1.95659 1.50039 1.21062 0.90817 0.77192 0.82427 1.90766 1.66467 1.47521 1.41140 1.45716 1.07819 1.63940 1.17957 1.21154 0.78933 1.00440 0.98663 1.21915 0.95680 1.02984 0.94600 1.20485 0.92592 0.85306 0.96266 0.94158 1.22254 1.00384 1.00284 0.98294 1.42654 1.12342 1.03755 1.78862 1.19593 0.90771 0.92179 1.33857 0.90875 1.25478 1.01776 0.95974 1.03859 1.69800 1.37009 0.99150 1.56142 0.85253 0.80680 0.76691 0.77892 1.21182 1.22708 1.19768 0.89757 0.90284 0.94042 0.92025 0.86433 0.81787 0.81113 0.81390 0.82641 0.74043 0.94756 0.93150 0.87129 0.90541 0.95022 0.90427 0.93464 0.79624 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.49 71.98 0.61 -0.92 16 2 C -0.13 -1.86 5.61 30.60 0.17 -1.69 16 3 C 0.07 1.48 2.53 29.85 0.08 1.56 16 4 H 0.13 1.92 5.42 -2.38 -0.01 1.90 16 5 O -0.31 -9.25 8.98 -74.07 -0.67 -9.91 16 6 C 0.07 1.81 5.66 22.53 0.13 1.94 16 7 C -0.19 -2.73 7.38 22.36 0.16 -2.56 16 8 C -0.08 -0.78 10.04 22.26 0.22 -0.56 16 9 C -0.12 -1.35 10.04 22.28 0.22 -1.12 16 10 C -0.12 -2.03 10.02 22.30 0.22 -1.81 16 11 C 0.02 0.59 7.31 22.45 0.16 0.76 16 12 F -0.16 -5.13 17.11 44.97 0.77 -4.36 16 13 C 0.50 15.38 7.18 87.66 0.63 16.01 16 14 O -0.58 -26.02 16.51 15.97 0.26 -25.76 16 15 N -0.70 -17.11 5.46 -463.06 -2.53 -19.64 16 16 C 0.13 4.32 5.56 86.38 0.48 4.80 16 17 C -0.11 -3.04 4.87 30.59 0.15 -2.89 16 18 C 0.16 5.90 2.89 44.99 0.13 6.03 16 19 H 0.04 1.54 8.08 -2.38 -0.02 1.52 16 20 C -0.15 -4.81 9.49 71.98 0.68 -4.13 16 21 N -0.74 -36.30 4.57 -322.93 -1.48 -37.77 16 22 C -0.23 -13.01 9.93 84.03 0.83 -12.18 16 23 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 25 N -0.97 -60.92 13.06 21.65 0.28 -60.63 16 26 Si 0.96 47.93 29.55 68.60 2.03 49.96 16 27 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 28 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 29 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 30 H 0.08 0.43 6.74 -2.39 -0.02 0.42 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.04 0.61 6.54 -2.39 -0.02 0.59 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.12 0.91 7.77 -2.39 -0.02 0.89 16 35 H 0.17 1.47 4.28 -2.91 -0.01 1.46 16 36 H 0.17 0.41 8.06 -2.91 -0.02 0.39 16 37 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 38 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.42 5.88 8.18 -92.71 -0.76 5.12 16 40 H 0.03 1.49 7.75 -2.39 -0.02 1.48 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.37 19.82 7.80 -92.71 -0.72 19.10 16 48 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -86.63 397.08 3.54 -83.09 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.49 Total: 25.98 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.36 Total: -0.95 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -3.72 Total: -118.04 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.40 Total: -35.67 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.77 Total: -4.36 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -86.63 3.54 -83.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267152864.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.577 kcal (2) G-P(sol) polarization free energy of solvation -86.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds