Wall clock time and date at job start Tue Mar 31 2020 20:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99538 * 179.97438 * 7 6 5 10 10 H 1.08998 * 109.47231 * 60.00064 * 9 7 6 11 11 C 1.52996 * 109.47310 * 299.99476 * 9 7 6 12 12 O 1.42905 * 109.46778 * 179.97438 * 9 7 6 13 13 C 1.42905 * 114.00033 * 209.99625 * 12 9 7 14 14 C 1.50705 * 109.47215 * 179.97438 * 13 12 9 15 15 C 1.38241 * 119.97285 * 269.73263 * 14 13 12 16 16 C 1.38203 * 120.02147 * 179.72443 * 15 14 13 17 17 C 1.38458 * 119.97513 * 0.57142 * 16 15 14 18 18 F 1.35095 * 120.02708 * 179.68476 * 17 16 15 19 19 C 1.38463 * 119.94395 * 359.69998 * 17 16 15 20 20 C 1.38195 * 119.97977 * 0.02562 * 19 17 16 21 21 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 3 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 3 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 3 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 31 31 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 32 32 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 34 34 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 35 35 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 36 36 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 37 37 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 38 38 H 1.08998 * 109.47453 * 300.00451 * 11 9 7 39 39 H 1.08998 * 109.47011 * 60.00399 * 11 9 7 40 40 H 1.09008 * 109.47269 * 180.02562 * 11 9 7 41 41 H 1.08996 * 109.47179 * 300.00807 * 13 12 9 42 42 H 1.09005 * 109.46364 * 60.00563 * 13 12 9 43 43 H 1.07998 * 119.99117 * 359.97429 * 15 14 13 44 44 H 1.08006 * 120.00980 * 180.24883 * 16 15 14 45 45 H 1.08002 * 120.01177 * 179.97438 * 19 17 16 46 46 H 1.07997 * 119.99087 * 179.97438 * 20 19 17 47 47 H 0.97000 * 119.99792 * 264.99726 * 21 3 2 48 48 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1636 2.1483 0.2571 9 6 5.8983 4.4747 -0.0379 10 1 5.4680 5.0881 0.7537 11 6 5.4978 5.0452 -1.3999 12 8 7.3225 4.4764 0.0796 13 6 7.8579 5.6760 0.6421 14 6 9.3591 5.5683 0.7193 15 6 9.9569 5.0504 1.8530 16 6 11.3333 4.9458 1.9226 17 6 12.1139 5.3710 0.8610 18 9 13.4596 5.2752 0.9305 19 6 11.5140 5.8948 -0.2717 20 6 10.1373 5.9931 -0.3414 21 7 1.6524 2.0975 -1.2518 22 6 0.4157 2.6734 -1.3688 23 1 -0.2740 2.6452 -0.5381 24 6 0.0506 3.2991 -2.5530 25 7 -1.1362 3.8574 -2.6635 26 14 1.2435 3.3485 -3.9896 27 1 1.0358 2.1538 -4.8468 28 1 1.0063 4.5780 -4.7879 29 1 2.6369 3.3530 -3.4759 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8935 -0.5138 0.8899 35 1 3.8500 1.0377 1.0960 36 1 3.9955 0.8311 -0.6660 37 1 3.4411 3.5483 -0.1315 38 1 5.9280 4.4318 -2.1915 39 1 4.4114 5.0439 -1.4891 40 1 5.8688 6.0662 -1.4895 41 1 7.5858 6.5246 0.0144 42 1 7.4524 5.8200 1.6436 43 1 9.3482 4.7236 2.6830 44 1 11.8000 4.5374 2.8068 45 1 12.1219 6.2272 -1.1003 46 1 9.6693 6.4020 -1.2246 47 1 2.2720 2.1232 -1.9978 48 1 -1.3915 4.2943 -3.4911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267824369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:42 Heat of formation + Delta-G solvation = -96.950683 kcal Electronic energy + Delta-G solvation = -28744.929656 eV Core-core repulsion = 24521.614474 eV Total energy + Delta-G solvation = -4223.315182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.22220 -40.02439 -39.42033 -37.71359 -36.72346 -33.91773 -32.64928 -32.28593 -31.50864 -30.84550 -30.28167 -28.04118 -26.29604 -24.53931 -23.42976 -23.19551 -22.26991 -21.83063 -20.35425 -19.89433 -18.07980 -17.93131 -17.21593 -17.08272 -16.78357 -15.95485 -15.90689 -15.63509 -15.43053 -15.13449 -14.58022 -14.49991 -14.12966 -13.91969 -13.90378 -13.54726 -13.24439 -13.20176 -12.98416 -12.85637 -12.61646 -12.56544 -12.40187 -12.32266 -11.82484 -11.58654 -11.37912 -11.30012 -11.18999 -11.03617 -10.73995 -10.44690 -10.34323 -10.09180 -10.04594 -9.54471 -9.46775 -9.43123 -9.03782 -8.99360 -8.80140 -7.40038 -5.86739 -3.22947 0.69012 0.88270 2.73060 2.86384 3.27976 3.30945 3.33459 3.39401 3.89236 3.93683 4.31557 4.46321 4.49430 4.55841 4.71317 4.75727 4.86171 4.86928 4.95771 5.07998 5.16350 5.19925 5.25856 5.39491 5.53674 5.54210 5.58580 5.61040 5.74069 5.75074 5.85049 5.85528 5.87601 6.02158 6.05101 6.14329 6.24235 6.43726 6.49133 6.50588 6.55495 6.72338 6.86370 6.91508 7.25630 7.75767 7.89047 8.31332 8.41253 9.09400 9.81733 10.01365 11.30777 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.002190 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.122316 B =12780.550497 C =13820.712841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.063 0.937 5 C 0.113 3.887 6 N -0.714 5.714 7 C 0.511 3.489 8 O -0.531 6.531 9 C 0.071 3.929 10 H 0.088 0.912 11 C -0.174 4.174 12 O -0.350 6.350 13 C 0.099 3.901 14 C -0.097 4.097 15 C -0.066 4.066 16 C -0.157 4.157 17 C 0.102 3.898 18 F -0.141 7.141 19 C -0.158 4.158 20 C -0.068 4.068 21 N -0.747 5.747 22 C -0.242 4.242 23 H 0.095 0.905 24 C 0.007 3.993 25 N -0.930 5.930 26 Si 0.880 3.120 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.276 1.276 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.410 0.590 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.362 0.638 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.311 5.354 8.391 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.081 0.919 5 C -0.011 4.011 6 N -0.368 5.368 7 C 0.295 3.705 8 O -0.407 6.407 9 C 0.010 3.990 10 H 0.106 0.894 11 C -0.232 4.232 12 O -0.269 6.269 13 C 0.023 3.977 14 C -0.097 4.097 15 C -0.084 4.084 16 C -0.176 4.176 17 C 0.082 3.918 18 F -0.119 7.119 19 C -0.176 4.176 20 C -0.086 4.086 21 N -0.390 5.390 22 C -0.372 4.372 23 H 0.112 0.888 24 C -0.189 4.189 25 N -0.578 5.578 26 Si 0.710 3.290 27 H -0.212 1.212 28 H -0.219 1.219 29 H -0.203 1.203 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.246 0.754 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.155 0.845 46 H 0.153 0.847 47 H 0.195 0.805 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 20.797 4.634 8.506 22.942 hybrid contribution 0.527 0.542 -1.210 1.426 sum 21.323 5.175 7.296 23.124 Atomic orbital electron populations 1.21780 0.95186 0.99734 1.03763 1.22036 0.97351 0.97815 1.00156 1.20551 0.89771 0.93033 0.90776 0.91921 1.21734 0.95499 0.82375 1.01510 1.45945 1.06712 1.10964 1.73139 1.20273 0.82678 0.90362 0.77164 1.90696 1.55925 1.45929 1.48173 1.21921 0.82914 0.94920 0.99234 0.89424 1.22275 1.03070 1.01627 0.96193 1.88125 1.18372 1.37190 1.83170 1.21401 0.89767 0.88166 0.98368 1.19634 0.94550 1.00825 0.94726 1.20970 0.93678 0.95759 0.97982 1.21153 0.94214 1.03271 0.98926 1.17778 0.76977 1.01025 0.95970 1.91502 1.29631 1.94089 1.96696 1.21143 0.95717 1.02952 0.97831 1.20952 0.92460 0.97308 0.97872 1.42835 1.16806 1.67679 1.11716 1.19048 0.90645 1.27506 0.99955 0.88755 1.24665 0.96415 1.00300 0.97549 1.69687 1.19457 1.41801 1.26823 0.86643 0.81102 0.77353 0.83902 1.21210 1.21874 1.20267 0.93883 0.89350 0.94852 0.92639 0.93530 0.91398 0.91829 0.75395 0.91119 0.90151 0.91316 0.91884 0.91972 0.84695 0.84519 0.84549 0.84726 0.80500 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.16 0.34 -2.22 16 2 C -0.13 -2.13 5.61 -26.73 -0.15 -2.28 16 3 C 0.17 2.84 2.59 -67.93 -0.18 2.67 16 4 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 5 C 0.11 1.75 5.23 -4.04 -0.02 1.73 16 6 N -0.71 -10.65 5.28 -60.29 -0.32 -10.97 16 7 C 0.51 7.95 7.23 -10.99 -0.08 7.87 16 8 O -0.53 -10.29 16.50 -14.35 -0.24 -10.53 16 9 C 0.07 0.87 3.14 -27.89 -0.09 0.78 16 10 H 0.09 0.83 7.79 -51.93 -0.40 0.42 16 11 C -0.17 -1.96 9.42 37.16 0.35 -1.61 16 12 O -0.35 -4.56 9.50 -55.14 -0.52 -5.08 16 13 C 0.10 0.91 5.87 36.01 0.21 1.12 16 14 C -0.10 -0.92 5.51 -104.62 -0.58 -1.49 16 15 C -0.07 -0.59 9.70 -39.59 -0.38 -0.97 16 16 C -0.16 -1.38 10.03 -39.51 -0.40 -1.78 16 17 C 0.10 0.97 7.30 -39.42 -0.29 0.69 16 18 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 19 C -0.16 -1.36 10.03 -39.51 -0.40 -1.76 16 20 C -0.07 -0.59 9.70 -39.60 -0.38 -0.97 16 21 N -0.75 -15.31 4.31 -53.42 -0.23 -15.54 16 22 C -0.24 -5.98 8.23 -15.06 -0.12 -6.11 16 23 H 0.09 2.53 7.55 -52.49 -0.40 2.13 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -27.23 13.97 55.49 0.78 -26.46 16 26 Si 0.88 20.59 27.74 -169.99 -4.72 15.88 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.28 -5.99 6.51 56.52 0.37 -5.63 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.86 5.99 -51.93 -0.31 1.55 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.41 5.93 7.56 -40.82 -0.31 5.62 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.94 7.56 -51.93 -0.39 0.55 16 40 H 0.07 0.61 7.87 -51.92 -0.41 0.21 16 41 H 0.06 0.46 7.81 -51.93 -0.41 0.05 16 42 H 0.06 0.47 8.03 -51.93 -0.42 0.06 16 43 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.36 7.58 5.66 -40.82 -0.23 7.35 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 401.01 15.07 6.04 6.04 Total: -1.00 -31.66 401.01 -8.94 -40.60 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -7.51 Total: 11.72 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.26 Total: -4.27 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.23 Total: -52.97 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.76 Total: -15.61 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.72 Total: 15.88 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.66 -8.94 -40.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267824369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.355 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds