Wall clock time and date at job start Tue Mar 31 2020 20:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99538 * 179.97438 * 7 6 5 10 10 H 1.08998 * 109.47231 * 60.00064 * 9 7 6 11 11 C 1.52996 * 109.47310 * 299.99476 * 9 7 6 12 12 O 1.42905 * 109.46778 * 179.97438 * 9 7 6 13 13 C 1.42905 * 114.00033 * 209.99625 * 12 9 7 14 14 C 1.50705 * 109.47215 * 179.97438 * 13 12 9 15 15 C 1.38241 * 119.97285 * 269.73263 * 14 13 12 16 16 C 1.38203 * 120.02147 * 179.72443 * 15 14 13 17 17 C 1.38458 * 119.97513 * 0.57142 * 16 15 14 18 18 F 1.35095 * 120.02708 * 179.68476 * 17 16 15 19 19 C 1.38463 * 119.94395 * 359.69998 * 17 16 15 20 20 C 1.38195 * 119.97977 * 0.02562 * 19 17 16 21 21 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 3 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 3 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 3 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 31 31 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 32 32 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 34 34 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 35 35 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 36 36 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 37 37 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 38 38 H 1.08998 * 109.47453 * 300.00451 * 11 9 7 39 39 H 1.08998 * 109.47011 * 60.00399 * 11 9 7 40 40 H 1.09008 * 109.47269 * 180.02562 * 11 9 7 41 41 H 1.08996 * 109.47179 * 300.00807 * 13 12 9 42 42 H 1.09005 * 109.46364 * 60.00563 * 13 12 9 43 43 H 1.07998 * 119.99117 * 359.97429 * 15 14 13 44 44 H 1.08006 * 120.00980 * 180.24883 * 16 15 14 45 45 H 1.08002 * 120.01177 * 179.97438 * 19 17 16 46 46 H 1.07997 * 119.99087 * 179.97438 * 20 19 17 47 47 H 0.97000 * 119.99792 * 264.99726 * 21 3 2 48 48 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1636 2.1483 0.2571 9 6 5.8983 4.4747 -0.0379 10 1 5.4680 5.0881 0.7537 11 6 5.4978 5.0452 -1.3999 12 8 7.3225 4.4764 0.0796 13 6 7.8579 5.6760 0.6421 14 6 9.3591 5.5683 0.7193 15 6 9.9569 5.0504 1.8530 16 6 11.3333 4.9458 1.9226 17 6 12.1139 5.3710 0.8610 18 9 13.4596 5.2752 0.9305 19 6 11.5140 5.8948 -0.2717 20 6 10.1373 5.9931 -0.3414 21 7 1.6524 2.0975 -1.2518 22 6 0.4157 2.6734 -1.3688 23 1 -0.2740 2.6452 -0.5381 24 6 0.0506 3.2991 -2.5530 25 7 -1.1362 3.8574 -2.6635 26 14 1.2435 3.3485 -3.9896 27 1 1.0358 2.1538 -4.8468 28 1 1.0063 4.5780 -4.7879 29 1 2.6369 3.3530 -3.4759 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8935 -0.5138 0.8899 35 1 3.8500 1.0377 1.0960 36 1 3.9955 0.8311 -0.6660 37 1 3.4411 3.5483 -0.1315 38 1 5.9280 4.4318 -2.1915 39 1 4.4114 5.0439 -1.4891 40 1 5.8688 6.0662 -1.4895 41 1 7.5858 6.5246 0.0144 42 1 7.4524 5.8200 1.6436 43 1 9.3482 4.7236 2.6830 44 1 11.8000 4.5374 2.8068 45 1 12.1219 6.2272 -1.1003 46 1 9.6693 6.4020 -1.2246 47 1 2.2720 2.1232 -1.9978 48 1 -1.3915 4.2943 -3.4911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267824369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:41 Heat of formation + Delta-G solvation = -115.844633 kcal Electronic energy + Delta-G solvation = -28745.748959 eV Core-core repulsion = 24521.614474 eV Total energy + Delta-G solvation = -4224.134485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.95519 -41.07882 -40.20406 -38.76785 -38.06623 -35.31904 -34.22277 -33.27272 -32.14096 -32.06327 -31.67100 -29.42266 -27.00886 -25.78792 -24.76652 -24.06341 -23.59860 -22.50285 -21.75277 -21.15912 -19.65795 -18.74451 -18.32398 -18.08323 -17.50663 -17.10208 -16.86631 -16.64399 -16.49473 -16.17374 -15.96630 -15.47014 -15.43220 -15.00193 -14.68473 -14.57195 -14.52174 -14.43855 -14.32943 -14.02685 -13.98220 -13.40100 -13.29198 -13.18386 -13.04014 -12.88286 -12.86124 -12.58865 -12.30437 -12.10554 -12.08236 -11.99372 -11.86851 -11.57131 -11.39427 -11.04091 -10.92179 -10.48910 -10.09992 -10.05518 -9.69682 -9.26874 -7.92361 -5.24544 0.00374 0.24504 1.41282 1.45319 1.51174 1.57793 1.90847 2.50334 2.54620 3.09440 3.23993 3.39490 3.57806 3.69605 3.70971 3.83282 3.91341 3.93714 3.96558 4.07486 4.18362 4.25961 4.34081 4.46007 4.46698 4.56819 4.58552 4.68048 4.73002 4.80612 4.83951 4.94135 4.96245 5.09196 5.10886 5.13043 5.18772 5.20798 5.21500 5.45353 5.49527 5.54737 5.74034 5.86254 5.90334 6.05897 6.29887 6.58295 7.15928 7.22903 7.90517 8.09443 9.28482 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.002190 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.122316 B =12780.550497 C =13820.712841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.170 3.830 4 H 0.063 0.937 5 C 0.121 3.879 6 N -0.710 5.710 7 C 0.508 3.492 8 O -0.574 6.574 9 C 0.076 3.924 10 H 0.119 0.881 11 C -0.170 4.170 12 O -0.378 6.378 13 C 0.095 3.905 14 C -0.110 4.110 15 C -0.075 4.075 16 C -0.162 4.162 17 C 0.083 3.917 18 F -0.148 7.148 19 C -0.162 4.162 20 C -0.073 4.073 21 N -0.745 5.745 22 C -0.202 4.202 23 H 0.069 0.931 24 C -0.060 4.060 25 N -0.983 5.983 26 Si 0.939 3.061 27 H -0.295 1.295 28 H -0.303 1.303 29 H -0.248 1.248 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.413 0.587 38 H 0.052 0.948 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.363 0.637 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.862 5.567 9.066 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.081 0.919 5 C -0.004 4.004 6 N -0.364 5.364 7 C 0.294 3.706 8 O -0.453 6.453 9 C 0.016 3.984 10 H 0.137 0.863 11 C -0.228 4.228 12 O -0.297 6.297 13 C 0.019 3.981 14 C -0.110 4.110 15 C -0.093 4.093 16 C -0.181 4.181 17 C 0.063 3.937 18 F -0.127 7.127 19 C -0.180 4.180 20 C -0.091 4.091 21 N -0.389 5.389 22 C -0.333 4.333 23 H 0.087 0.913 24 C -0.252 4.252 25 N -0.634 5.634 26 Si 0.769 3.231 27 H -0.223 1.223 28 H -0.230 1.230 29 H -0.172 1.172 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.250 0.750 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.164 0.836 44 H 0.168 0.832 45 H 0.170 0.830 46 H 0.170 0.830 47 H 0.196 0.804 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 22.390 4.833 9.217 24.690 hybrid contribution 0.048 0.399 -1.286 1.347 sum 22.437 5.232 7.931 24.366 Atomic orbital electron populations 1.21690 0.96313 1.00394 1.01665 1.21973 0.96151 0.97156 1.01660 1.20687 0.90984 0.93288 0.88907 0.91892 1.21613 0.93834 0.82868 1.02062 1.45944 1.06887 1.10803 1.72732 1.20945 0.82225 0.91574 0.75844 1.90674 1.56828 1.47589 1.50209 1.21924 0.83010 0.92777 1.00729 0.86316 1.22263 1.02689 1.02824 0.95033 1.88091 1.18616 1.39279 1.83693 1.21627 0.89348 0.87499 0.99599 1.19858 0.95071 1.01042 0.95066 1.21192 0.93862 0.95761 0.98489 1.21364 0.94366 1.03063 0.99316 1.18041 0.76817 1.01983 0.96813 1.91479 1.30178 1.94259 1.96788 1.21382 0.96111 1.02510 0.98016 1.21208 0.92439 0.97075 0.98347 1.42814 1.15259 1.67626 1.13187 1.18944 0.91205 1.24774 0.98389 0.91282 1.25288 0.97941 1.01579 1.00350 1.69849 1.21841 1.44439 1.27285 0.85652 0.80688 0.76155 0.80630 1.22258 1.22992 1.17211 0.93782 0.93488 0.92925 0.92787 0.90339 0.89947 0.92518 0.74991 0.92855 0.90557 0.88587 0.89687 0.90398 0.83561 0.83186 0.82999 0.82978 0.80400 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.18 71.98 0.66 -4.14 16 2 C -0.13 -3.83 5.61 30.59 0.17 -3.66 16 3 C 0.17 5.38 2.59 44.99 0.12 5.50 16 4 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 5 C 0.12 3.44 5.23 86.38 0.45 3.89 16 6 N -0.71 -19.62 5.28 -463.05 -2.45 -22.07 16 7 C 0.51 14.81 7.23 87.66 0.63 15.44 16 8 O -0.57 -21.52 16.50 16.01 0.26 -21.26 16 9 C 0.08 1.65 3.14 29.85 0.09 1.74 16 10 H 0.12 1.79 7.79 -2.39 -0.02 1.78 16 11 C -0.17 -3.36 9.42 71.98 0.68 -2.68 16 12 O -0.38 -8.94 9.50 -129.94 -1.24 -10.18 16 13 C 0.09 1.46 5.87 71.24 0.42 1.88 16 14 C -0.11 -1.87 5.51 -19.86 -0.11 -1.98 16 15 C -0.08 -1.24 9.70 22.26 0.22 -1.03 16 16 C -0.16 -2.71 10.03 22.31 0.22 -2.49 16 17 C 0.08 1.52 7.30 22.38 0.16 1.68 16 18 F -0.15 -2.96 17.27 44.97 0.78 -2.19 16 19 C -0.16 -2.59 10.03 22.31 0.22 -2.36 16 20 C -0.07 -1.12 9.70 22.26 0.22 -0.91 16 21 N -0.75 -29.48 4.31 -322.93 -1.39 -30.87 16 22 C -0.20 -9.98 8.23 84.04 0.69 -9.29 16 23 H 0.07 3.75 7.55 -2.91 -0.02 3.73 16 24 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 25 N -0.98 -59.01 13.97 21.65 0.30 -58.71 16 26 Si 0.94 42.52 27.74 68.60 1.90 44.42 16 27 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 29 H -0.25 -9.85 6.51 99.48 0.65 -9.20 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.96 5.99 -2.39 -0.01 1.95 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.41 10.96 7.56 -92.71 -0.70 10.26 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.57 7.56 -2.39 -0.02 1.55 16 40 H 0.10 1.36 7.87 -2.38 -0.02 1.34 16 41 H 0.09 0.92 7.81 -2.39 -0.02 0.90 16 42 H 0.08 0.93 8.03 -2.38 -0.02 0.92 16 43 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 45 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 46 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 47 H 0.36 14.43 5.66 -92.71 -0.52 13.90 16 48 H 0.25 14.78 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -69.74 401.01 3.18 -66.56 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.31 Total: 35.48 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 5.32 Total: -1.18 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -3.53 Total: -111.65 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.97 Total: -31.44 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.90 Total: 44.42 kcal Total: -69.74 3.18 -66.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267824369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.285 kcal (2) G-P(sol) polarization free energy of solvation -69.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds