Wall clock time and date at job start Tue Mar 31 2020 22:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33114 * 1 3 3 F 1.35097 * 120.00158 * 2 1 4 4 C 1.47292 * 120.00082 * 179.97438 * 2 1 3 5 5 O 1.21614 * 120.00051 * 352.08108 * 4 2 1 6 6 N 1.34769 * 120.00420 * 172.07881 * 4 2 1 7 7 C 1.46929 * 120.64049 * 172.88611 * 6 4 2 8 8 C 1.53196 * 108.77247 * 126.33522 * 7 6 4 9 9 C 1.52948 * 109.35698 * 54.51722 * 8 7 6 10 10 C 1.53084 * 109.46937 * 178.73546 * 9 8 7 11 11 C 1.53075 * 108.53899 * 172.71185 * 10 9 8 12 12 C 1.50178 * 109.81962 * 48.86909 * 11 10 9 13 13 O 1.21285 * 118.23066 * 162.35690 * 12 11 10 14 14 N 1.33348 * 123.53066 * 342.38262 * 12 11 10 15 15 C 1.46500 * 117.94841 * 182.28426 * 14 12 11 16 16 C 1.52999 * 109.47384 * 89.99720 * 15 14 12 17 17 C 1.50699 * 109.46910 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00497 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99913 * 180.02562 * 17 16 15 20 20 N 1.31523 * 120.00075 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00215 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47187 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47224 * 120.00084 * 21 19 17 24 24 H 1.48500 * 109.47181 * 239.99805 * 21 19 17 25 25 C 1.45764 * 124.10101 * 2.25554 * 14 12 11 26 26 C 1.52951 * 109.70951 * 298.86369 * 9 8 7 27 27 C 1.46933 * 120.63506 * 352.91122 * 6 4 2 28 28 H 1.07993 * 120.00443 * 179.97438 * 1 2 3 29 29 H 1.08007 * 119.99634 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58549 * 6.54929 * 7 6 4 31 31 H 1.09002 * 109.58913 * 246.12021 * 7 6 4 32 32 H 1.08997 * 109.49480 * 294.54996 * 8 7 6 33 33 H 1.09005 * 109.50846 * 174.49796 * 8 7 6 34 34 H 1.09003 * 109.52706 * 53.03717 * 10 9 8 35 35 H 1.08995 * 109.66376 * 292.47037 * 10 9 8 36 36 H 1.08997 * 109.40142 * 288.78509 * 11 10 9 37 37 H 1.09002 * 109.40000 * 168.95732 * 11 10 9 38 38 H 1.08997 * 109.47151 * 209.99962 * 15 14 12 39 39 H 1.09007 * 109.47255 * 329.99420 * 15 14 12 40 40 H 1.09003 * 109.47094 * 299.99519 * 16 15 14 41 41 H 1.09000 * 109.47122 * 60.00329 * 16 15 14 42 42 H 0.96991 * 120.00036 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.26920 * 101.31725 * 25 14 12 44 44 H 1.08998 * 109.27527 * 220.82988 * 25 14 12 45 45 H 1.08996 * 109.49049 * 181.11494 * 26 9 8 46 46 H 1.09006 * 109.48452 * 301.18173 * 26 9 8 47 47 H 1.09002 * 109.58939 * 353.45486 * 27 6 4 48 48 H 1.09004 * 109.58768 * 113.74420 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3311 0.0000 0.0000 3 9 2.0067 1.1700 0.0000 4 6 2.0676 -1.2756 0.0006 5 8 1.4683 -2.3237 0.1461 6 7 3.4057 -1.2813 -0.1603 7 6 4.1729 -2.5250 -0.0076 8 6 5.0185 -2.7404 -1.2668 9 6 5.8750 -1.4990 -1.5207 10 6 6.7443 -1.7238 -2.7606 11 6 7.4537 -0.4110 -3.1021 12 6 8.0939 0.1578 -1.8684 13 8 8.9552 1.0006 -2.0056 14 7 7.7666 -0.2142 -0.6304 15 6 8.4337 0.4579 0.4874 16 6 7.6229 1.6880 0.9001 17 6 8.3089 2.3789 2.0504 18 1 9.2311 1.9807 2.4472 19 6 7.7592 3.5194 2.5964 20 7 6.6364 4.0046 2.1130 21 14 8.6091 4.3754 4.0227 22 1 9.8463 3.6350 4.3782 23 1 8.9583 5.7641 3.6294 24 1 7.6978 4.4072 5.1948 25 6 6.7862 -1.2472 -0.3197 26 6 4.9712 -0.2857 -1.7453 27 6 4.1253 -0.0437 -0.4912 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 3.4882 -3.3634 0.1206 31 1 4.8256 -2.4473 0.8620 32 1 4.3627 -2.9106 -2.1206 33 1 5.6655 -3.6064 -1.1270 34 1 6.1147 -2.0283 -3.5966 35 1 7.4842 -2.4972 -2.5544 36 1 6.7280 0.3012 -3.4947 37 1 8.2201 -0.5987 -3.8541 38 1 8.5083 -0.2279 1.3313 39 1 9.4330 0.7673 0.1812 40 1 7.5484 2.3739 0.0562 41 1 6.6237 1.3786 1.2064 42 1 6.2499 4.8072 2.4968 43 1 7.3056 -2.1703 -0.0625 44 1 6.1818 -0.9261 0.5286 45 1 5.5846 0.5927 -1.9455 46 1 4.3155 -0.4733 -2.5957 47 1 3.4092 0.7555 -0.6821 48 1 4.7724 0.2362 0.3402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269285604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:17 Heat of formation + Delta-G solvation = -85.129792 kcal Electronic energy + Delta-G solvation = -31511.122564 eV Core-core repulsion = 27288.319974 eV Total energy + Delta-G solvation = -4222.802590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.42476 -41.16785 -39.77043 -38.05126 -35.46201 -34.72717 -32.80668 -32.59565 -31.75976 -30.82767 -29.63525 -27.30645 -25.76921 -24.71898 -23.90631 -23.56355 -22.11473 -21.24673 -20.23261 -19.51445 -18.09035 -17.15584 -16.92644 -16.51060 -16.24377 -16.20787 -15.70513 -15.54349 -15.20807 -15.01463 -14.82505 -14.54525 -14.44297 -14.20096 -13.71249 -13.48291 -13.25694 -13.08204 -12.92503 -12.82139 -12.52555 -12.24441 -12.07730 -12.01482 -11.85584 -11.39328 -11.26879 -11.21630 -10.95470 -10.77725 -10.69042 -10.55092 -10.46643 -9.94394 -9.86136 -9.84237 -9.70010 -9.33119 -9.03241 -8.73012 -8.35416 -8.01223 -6.01059 -4.03434 0.92787 2.68663 2.82240 3.12931 3.31299 3.38693 3.42355 3.52456 3.83123 4.37989 4.40424 4.44915 4.46866 4.54055 4.80894 4.91558 4.93914 5.13470 5.20019 5.21447 5.28810 5.34632 5.37105 5.44863 5.46108 5.52199 5.58523 5.66434 5.74952 5.76153 5.78385 5.86948 5.93261 5.93768 6.00368 6.12391 6.18942 6.25463 6.40949 6.57708 6.85827 6.91060 7.14123 7.61834 7.74171 7.78275 7.99128 8.05713 8.37263 8.70587 9.02970 9.60416 11.10254 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008991 B = 0.004572 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.585962 B = 6123.279416 C = 8303.090268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.002 3.998 3 F -0.120 7.120 4 C 0.548 3.452 5 O -0.533 6.533 6 N -0.593 5.593 7 C 0.105 3.895 8 C -0.115 4.115 9 C -0.075 4.075 10 C -0.109 4.109 11 C -0.136 4.136 12 C 0.509 3.491 13 O -0.553 6.553 14 N -0.595 5.595 15 C 0.109 3.891 16 C 0.018 3.982 17 C -0.519 4.519 18 H 0.056 0.944 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.120 3.880 26 C -0.121 4.121 27 C 0.054 3.946 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.021 0.979 41 H 0.013 0.987 42 H 0.260 0.740 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.131 0.869 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 -14.406 -9.054 19.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.020 4.020 3 F -0.099 7.099 4 C 0.335 3.665 5 O -0.412 6.412 6 N -0.325 5.325 7 C -0.017 4.017 8 C -0.154 4.154 9 C -0.075 4.075 10 C -0.147 4.147 11 C -0.176 4.176 12 C 0.296 3.704 13 O -0.431 6.431 14 N -0.327 5.327 15 C -0.012 4.012 16 C -0.020 4.020 17 C -0.558 4.558 18 H 0.074 0.926 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.003 4.003 26 C -0.159 4.159 27 C -0.067 4.067 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.039 0.961 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.148 0.852 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.231 -14.359 -9.028 19.808 hybrid contribution 0.541 0.879 0.865 1.347 sum -9.689 -13.480 -8.162 18.499 Atomic orbital electron populations 1.24899 0.93226 1.05668 0.94107 1.19958 0.91783 0.81065 1.09165 1.91260 1.78919 1.45841 1.93832 1.18297 0.82283 0.88361 0.77539 1.90810 1.67732 1.31573 1.51051 1.48083 1.05763 1.10845 1.67778 1.21739 0.94948 0.86964 0.98018 1.21874 0.98066 0.97093 0.98366 1.20790 0.95043 0.96015 0.95666 1.21656 0.98548 0.97167 0.97281 1.21695 1.01271 0.98059 0.96548 1.19933 0.83155 0.82667 0.84632 1.90729 1.32760 1.33229 1.86401 1.47438 1.40602 1.37797 1.06849 1.21919 0.97974 0.95601 0.85715 1.19328 0.94817 0.91357 0.96504 1.21128 1.08637 1.10075 1.15964 0.92572 1.24974 0.94970 0.97071 0.97157 1.69973 1.19032 1.22437 1.41652 0.86539 0.79620 0.79605 0.82260 1.19707 1.20981 1.21064 1.21489 0.90234 0.91078 0.97506 1.21978 0.97825 0.98338 0.97803 1.23050 0.98433 0.86743 0.98491 0.84092 0.85297 0.88674 0.90646 0.90831 0.90111 0.90812 0.91078 0.88497 0.88737 0.92149 0.90563 0.96070 0.96833 0.93074 0.92114 0.90101 0.89768 0.91336 0.85237 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 14.26 28.95 0.41 -0.81 16 2 C 0.00 0.03 7.15 -37.69 -0.27 -0.24 16 3 F -0.12 -1.56 13.47 2.25 0.03 -1.53 16 4 C 0.55 7.11 7.62 -12.58 -0.10 7.01 16 5 O -0.53 -7.84 15.68 5.27 0.08 -7.76 16 6 N -0.59 -7.20 2.97 -174.07 -0.52 -7.72 16 7 C 0.11 1.08 6.00 -3.71 -0.02 1.06 16 8 C -0.12 -0.98 4.88 -26.66 -0.13 -1.11 16 9 C -0.07 -0.77 0.51 -154.60 -0.08 -0.85 16 10 C -0.11 -1.02 4.93 -26.65 -0.13 -1.15 16 11 C -0.14 -1.67 5.40 -28.10 -0.15 -1.82 16 12 C 0.51 8.99 6.66 -11.87 -0.08 8.91 16 13 O -0.55 -12.52 16.18 5.55 0.09 -12.43 16 14 N -0.60 -10.17 2.70 -175.01 -0.47 -10.64 16 15 C 0.11 2.28 5.16 -4.04 -0.02 2.26 16 16 C 0.02 0.46 5.29 -27.88 -0.15 0.31 16 17 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 21 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.12 1.56 4.23 -4.52 -0.02 1.54 16 26 C -0.12 -1.42 4.30 -26.65 -0.11 -1.53 16 27 C 0.05 0.70 5.57 -3.70 -0.02 0.68 16 28 H 0.14 1.13 7.52 -52.49 -0.39 0.74 16 29 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 30 H 0.09 1.00 7.00 -51.93 -0.36 0.63 16 31 H 0.08 0.76 6.96 -51.93 -0.36 0.40 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 36 H 0.10 1.13 6.93 -51.93 -0.36 0.77 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.16 8.01 -51.93 -0.42 0.75 16 39 H 0.08 1.75 7.13 -51.92 -0.37 1.38 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.01 0.35 7.92 -51.93 -0.41 -0.06 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 44 H 0.08 1.14 5.07 -51.93 -0.26 0.88 16 45 H 0.08 1.17 5.75 -51.93 -0.30 0.87 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.13 1.73 4.16 -51.93 -0.22 1.52 16 48 H 0.09 1.36 6.32 -51.93 -0.33 1.03 16 LS Contribution 373.63 15.07 5.63 5.63 Total: -1.00 -34.38 373.63 -7.85 -42.23 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.13 Total: 0.47 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.28 Total: 0.91 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.25 Total: -44.23 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.19 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.03 Total: -1.53 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.38 -7.85 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269285604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.904 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds