Wall clock time and date at job start Tue Mar 31 2020 20:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47025 * 5.28431 * 3 2 1 5 5 C 1.39592 * 123.89327 * 269.99860 * 4 3 2 6 6 C 1.39325 * 130.79640 * 359.96712 * 5 4 3 7 7 C 1.37931 * 120.17141 * 179.97438 * 6 5 4 8 8 C 1.38312 * 120.33454 * 0.03545 * 7 6 5 9 9 C 1.38373 * 119.84487 * 359.97438 * 8 7 6 10 10 C 1.37700 * 119.97589 * 0.02562 * 9 8 7 11 11 C 1.50708 * 133.17212 * 179.97438 * 10 9 8 12 12 C 1.52630 * 110.61048 * 61.18467 * 11 10 9 13 13 C 1.53140 * 109.27144 * 180.73345 * 12 11 10 14 14 N 1.46846 * 109.47748 * 58.40194 * 13 12 11 15 15 C 1.46896 * 111.00009 * 173.75833 * 14 13 12 16 16 C 1.52996 * 109.47256 * 170.00096 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 C 1.46842 * 111.32199 * 297.94696 * 14 13 12 26 26 C 1.52635 * 110.58898 * 298.70328 * 11 10 9 27 27 C 1.34495 * 123.89612 * 89.99800 * 4 3 2 28 28 O 1.21292 * 126.54496 * 359.97438 * 27 4 3 29 29 H 4.40645 * 5.51434 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.46705 * 245.28252 * 3 2 1 31 31 H 1.08995 * 109.46713 * 125.28496 * 3 2 1 32 32 H 1.08005 * 119.91542 * 359.97438 * 6 5 4 33 33 H 1.08003 * 119.83239 * 179.97438 * 7 6 5 34 34 H 1.08002 * 120.07228 * 179.97438 * 8 7 6 35 35 H 1.08009 * 120.01309 * 180.02562 * 9 8 7 36 36 H 1.09006 * 109.50483 * 60.79893 * 12 11 10 37 37 H 1.08996 * 109.53550 * 300.69656 * 12 11 10 38 38 H 1.09000 * 109.47043 * 298.40286 * 13 12 11 39 39 H 1.09001 * 109.46715 * 178.40816 * 13 12 11 40 40 H 1.09004 * 109.46774 * 50.00295 * 15 14 13 41 41 H 1.09000 * 109.47723 * 290.00683 * 15 14 13 42 42 H 1.09004 * 109.47066 * 60.00378 * 16 15 14 43 43 H 1.08994 * 109.47405 * 300.00209 * 16 15 14 44 44 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.47002 * 182.06188 * 25 14 13 46 46 H 1.08992 * 109.47212 * 302.06187 * 25 14 13 47 47 H 1.09000 * 109.50572 * 299.22077 * 26 11 10 48 48 H 1.08995 * 109.50873 * 59.35506 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3745 -0.1272 5 6 3.3948 -2.2119 0.9590 6 6 3.2727 -1.9901 2.3291 7 6 3.5949 -2.9887 3.2244 8 6 4.0418 -4.2164 2.7704 9 6 4.1660 -4.4444 1.4113 10 6 3.8453 -3.4498 0.5147 11 6 3.8671 -3.3719 -0.9902 12 6 2.9241 -4.4081 -1.5956 13 6 2.9838 -4.3146 -3.1230 14 7 4.3637 -4.5367 -3.5735 15 6 4.4349 -4.6015 -5.0393 16 6 5.8999 -4.5825 -5.4801 17 6 5.9730 -4.6483 -6.9839 18 1 5.0653 -4.6982 -7.5670 19 6 7.1985 -4.6385 -7.6157 20 7 8.3038 -4.5774 -6.9056 21 14 7.2888 -4.7123 -9.4800 22 1 6.5786 -3.5426 -10.0567 23 1 8.7106 -4.6891 -9.9080 24 1 6.6490 -5.9646 -9.9575 25 6 5.2693 -3.5073 -3.0476 26 6 5.2850 -3.5746 -1.5177 27 6 3.3852 -1.9757 -1.3040 28 8 3.2492 -1.4895 -2.4068 29 1 -1.0499 -0.0004 -0.0002 30 1 3.0091 0.4305 0.9335 31 1 3.0090 0.5944 -0.8389 32 1 2.9248 -1.0338 2.6910 33 1 3.4985 -2.8107 4.2853 34 1 4.2933 -4.9951 3.4753 35 1 4.5144 -5.4022 1.0538 36 1 1.9057 -4.2141 -1.2588 37 1 3.2280 -5.4060 -1.2798 38 1 2.6531 -3.3255 -3.4397 39 1 2.3328 -5.0723 -3.5591 40 1 3.9159 -3.7434 -5.4665 41 1 3.9631 -5.5209 -5.3858 42 1 6.4190 -5.4405 -5.0529 43 1 6.3717 -3.6631 -5.1337 44 1 9.1660 -4.5708 -7.3501 45 1 6.2757 -3.6796 -3.4291 46 1 4.9240 -2.5234 -3.3646 47 1 5.9345 -2.7919 -1.1257 48 1 5.6557 -4.5491 -1.2000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:00 Heat of formation + Delta-G solvation = 67.859661 kcal Electronic energy + Delta-G solvation = -29520.799656 eV Core-core repulsion = 25735.400411 eV Total energy + Delta-G solvation = -3785.399245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.24618 -38.83183 -38.03250 -36.23029 -35.02362 -33.49186 -32.65714 -30.93000 -30.65930 -30.17089 -28.64664 -27.91565 -25.42294 -23.70885 -23.09849 -22.69129 -21.60348 -21.54838 -19.86185 -19.11328 -18.77981 -17.22922 -16.86681 -16.45561 -16.11968 -16.04881 -15.16509 -14.67997 -14.55191 -14.51609 -14.44410 -14.22578 -14.14720 -13.85608 -13.51347 -13.10174 -13.05240 -12.87121 -12.72264 -12.37238 -12.20462 -11.93137 -11.73653 -11.45398 -11.10660 -11.05059 -11.00324 -10.88079 -10.74345 -10.59409 -10.56368 -10.38965 -10.15789 -9.94412 -9.59843 -9.23059 -9.11865 -8.98202 -8.28397 -8.18565 -7.52498 -5.95312 -3.96842 0.96736 1.09165 1.94507 2.35342 2.46496 2.97400 3.37222 3.40934 3.43944 3.51645 3.95489 4.01703 4.14283 4.46230 4.53936 4.62687 4.65777 4.82798 4.87734 4.90771 4.92415 5.09837 5.16945 5.37182 5.40565 5.42885 5.53660 5.56900 5.62502 5.70628 5.78984 5.83446 5.92476 5.97668 6.10731 6.14350 6.25928 6.29379 6.34999 6.38614 6.48345 6.51360 6.66923 6.68464 6.86243 7.02727 7.22161 7.59108 7.70599 7.80079 7.88210 7.92913 8.11521 8.49643 9.09469 9.66276 11.16144 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.002806 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.438364 B = 9976.785056 C =10838.176623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.214 4.214 3 C 0.220 3.780 4 N -0.553 5.553 5 C 0.146 3.854 6 C -0.141 4.141 7 C -0.088 4.088 8 C -0.142 4.142 9 C -0.059 4.059 10 C -0.122 4.122 11 C -0.046 4.046 12 C -0.084 4.084 13 C 0.045 3.955 14 N -0.535 5.535 15 C 0.064 3.936 16 C 0.022 3.978 17 C -0.520 4.520 18 H 0.053 0.947 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.041 3.959 26 C -0.087 4.087 27 C 0.536 3.464 28 O -0.476 6.476 29 H 0.220 0.780 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.020 0.980 41 H 0.061 0.939 42 H 0.024 0.976 43 H 0.020 0.980 44 H 0.260 0.740 45 H 0.098 0.902 46 H 0.045 0.955 47 H 0.065 0.935 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 5.509 24.440 27.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.215 4.215 3 C 0.100 3.900 4 N -0.276 5.276 5 C 0.051 3.949 6 C -0.162 4.162 7 C -0.106 4.106 8 C -0.161 4.161 9 C -0.078 4.078 10 C -0.125 4.125 11 C -0.050 4.050 12 C -0.122 4.122 13 C -0.083 4.083 14 N -0.259 5.259 15 C -0.063 4.063 16 C -0.015 4.015 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.086 4.086 26 C -0.125 4.125 27 C 0.325 3.675 28 O -0.347 6.347 29 H 0.237 0.763 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.116 0.884 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.044 5.471 23.866 27.287 hybrid contribution -0.506 0.985 -1.244 1.666 sum -12.550 6.456 22.622 26.663 Atomic orbital electron populations 1.24997 0.95939 0.97562 1.00439 1.23313 0.94727 1.02425 1.01044 1.18374 0.84182 0.82557 1.04922 1.46007 1.62278 1.13018 1.06298 1.18245 0.97931 0.90204 0.88530 1.20301 1.05799 1.00696 0.89394 1.20846 0.97816 0.92798 0.99173 1.21062 1.02310 0.97624 0.95063 1.20321 0.97318 0.98136 0.92004 1.19783 1.04250 0.94009 0.94442 1.19928 0.99908 0.93477 0.91643 1.21365 0.97031 0.97882 0.95964 1.22163 0.91821 1.00760 0.93606 1.62052 1.05310 1.46542 1.12042 1.22279 1.01385 0.99068 0.83568 1.19229 0.89074 0.97647 0.95564 1.21170 0.92227 1.50516 0.91984 0.92840 1.24984 0.95802 0.95357 0.98167 1.69956 0.97423 1.50747 1.35269 0.86659 0.76844 0.78602 0.85891 1.20327 1.21306 1.20234 1.22323 0.99600 0.94380 0.92332 1.21453 0.91153 1.03060 0.96840 1.20696 0.75953 0.87792 0.83066 1.90781 1.50640 1.70713 1.22612 0.76290 0.87434 0.86866 0.86040 0.85404 0.85353 0.85104 0.91942 0.89524 0.93672 0.90932 0.96173 0.92031 0.95719 0.96162 0.92996 0.88416 0.93681 0.91603 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 19.25 29.55 0.57 -1.05 16 2 C -0.21 -2.31 13.68 -37.12 -0.51 -2.81 16 3 C 0.22 2.20 6.21 -6.83 -0.04 2.15 16 4 N -0.55 -6.79 2.70 -116.45 -0.31 -7.10 16 5 C 0.15 1.62 6.70 -83.63 -0.56 1.06 16 6 C -0.14 -1.22 9.73 -39.29 -0.38 -1.60 16 7 C -0.09 -0.65 10.02 -39.67 -0.40 -1.04 16 8 C -0.14 -1.09 10.06 -39.50 -0.40 -1.48 16 9 C -0.06 -0.56 10.03 -39.73 -0.40 -0.95 16 10 C -0.12 -1.40 5.00 -104.52 -0.52 -1.92 16 11 C -0.05 -0.63 0.67 -157.04 -0.11 -0.73 16 12 C -0.08 -1.15 4.94 -26.85 -0.13 -1.28 16 13 C 0.04 0.75 5.19 -3.78 -0.02 0.73 16 14 N -0.53 -10.28 4.79 -234.54 -1.12 -11.40 16 15 C 0.06 1.43 5.21 -3.83 -0.02 1.41 16 16 C 0.02 0.59 4.22 -27.88 -0.12 0.47 16 17 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 21 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.04 0.78 4.63 -3.78 -0.02 0.76 16 26 C -0.09 -1.29 4.93 -26.84 -0.13 -1.42 16 27 C 0.54 8.09 6.52 -10.97 -0.07 8.02 16 28 O -0.48 -8.73 13.71 5.55 0.08 -8.65 16 29 H 0.22 1.28 7.80 -54.10 -0.42 0.86 16 30 H 0.11 0.74 7.61 -51.93 -0.40 0.34 16 31 H 0.11 1.14 7.96 -51.93 -0.41 0.72 16 32 H 0.12 0.83 7.69 -52.48 -0.40 0.43 16 33 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.84 6.13 -51.93 -0.32 0.52 16 39 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 40 H 0.02 0.47 8.08 -51.93 -0.42 0.05 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.02 0.57 6.20 -51.93 -0.32 0.24 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.10 2.05 5.79 -51.93 -0.30 1.75 16 46 H 0.05 0.93 6.13 -51.93 -0.32 0.61 16 47 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -33.91 387.50 -10.56 -44.46 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.08 Total: -0.23 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -3.67 Total: -13.55 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.70 Total: -44.99 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.91 -10.56 -44.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.320 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds