Wall clock time and date at job start Tue Mar 31 2020 20:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47025 * 5.28431 * 3 2 1 5 5 C 1.39592 * 123.89327 * 269.99860 * 4 3 2 6 6 C 1.39325 * 130.79640 * 359.96712 * 5 4 3 7 7 C 1.37931 * 120.17141 * 179.97438 * 6 5 4 8 8 C 1.38312 * 120.33454 * 0.03545 * 7 6 5 9 9 C 1.38373 * 119.84487 * 359.97438 * 8 7 6 10 10 C 1.37700 * 119.97589 * 0.02562 * 9 8 7 11 11 C 1.50708 * 133.17212 * 179.97438 * 10 9 8 12 12 C 1.52630 * 110.61048 * 61.18467 * 11 10 9 13 13 C 1.53140 * 109.27144 * 180.73345 * 12 11 10 14 14 N 1.46846 * 109.47748 * 58.40194 * 13 12 11 15 15 C 1.46896 * 111.00009 * 173.75833 * 14 13 12 16 16 C 1.52996 * 109.47256 * 170.00096 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 C 1.46842 * 111.32199 * 297.94696 * 14 13 12 26 26 C 1.52635 * 110.58898 * 298.70328 * 11 10 9 27 27 C 1.34495 * 123.89612 * 89.99800 * 4 3 2 28 28 O 1.21292 * 126.54496 * 359.97438 * 27 4 3 29 29 H 4.40645 * 5.51434 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.46705 * 245.28252 * 3 2 1 31 31 H 1.08995 * 109.46713 * 125.28496 * 3 2 1 32 32 H 1.08005 * 119.91542 * 359.97438 * 6 5 4 33 33 H 1.08003 * 119.83239 * 179.97438 * 7 6 5 34 34 H 1.08002 * 120.07228 * 179.97438 * 8 7 6 35 35 H 1.08009 * 120.01309 * 180.02562 * 9 8 7 36 36 H 1.09006 * 109.50483 * 60.79893 * 12 11 10 37 37 H 1.08996 * 109.53550 * 300.69656 * 12 11 10 38 38 H 1.09000 * 109.47043 * 298.40286 * 13 12 11 39 39 H 1.09001 * 109.46715 * 178.40816 * 13 12 11 40 40 H 1.09004 * 109.46774 * 50.00295 * 15 14 13 41 41 H 1.09000 * 109.47723 * 290.00683 * 15 14 13 42 42 H 1.09004 * 109.47066 * 60.00378 * 16 15 14 43 43 H 1.08994 * 109.47405 * 300.00209 * 16 15 14 44 44 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.47002 * 182.06188 * 25 14 13 46 46 H 1.08992 * 109.47212 * 302.06187 * 25 14 13 47 47 H 1.09000 * 109.50572 * 299.22077 * 26 11 10 48 48 H 1.08995 * 109.50873 * 59.35506 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3745 -0.1272 5 6 3.3948 -2.2119 0.9590 6 6 3.2727 -1.9901 2.3291 7 6 3.5949 -2.9887 3.2244 8 6 4.0418 -4.2164 2.7704 9 6 4.1660 -4.4444 1.4113 10 6 3.8453 -3.4498 0.5147 11 6 3.8671 -3.3719 -0.9902 12 6 2.9241 -4.4081 -1.5956 13 6 2.9838 -4.3146 -3.1230 14 7 4.3637 -4.5367 -3.5735 15 6 4.4349 -4.6015 -5.0393 16 6 5.8999 -4.5825 -5.4801 17 6 5.9730 -4.6483 -6.9839 18 1 5.0653 -4.6982 -7.5670 19 6 7.1985 -4.6385 -7.6157 20 7 8.3038 -4.5774 -6.9056 21 14 7.2888 -4.7123 -9.4800 22 1 6.5786 -3.5426 -10.0567 23 1 8.7106 -4.6891 -9.9080 24 1 6.6490 -5.9646 -9.9575 25 6 5.2693 -3.5073 -3.0476 26 6 5.2850 -3.5746 -1.5177 27 6 3.3852 -1.9757 -1.3040 28 8 3.2492 -1.4895 -2.4068 29 1 -1.0499 -0.0004 -0.0002 30 1 3.0091 0.4305 0.9335 31 1 3.0090 0.5944 -0.8389 32 1 2.9248 -1.0338 2.6910 33 1 3.4985 -2.8107 4.2853 34 1 4.2933 -4.9951 3.4753 35 1 4.5144 -5.4022 1.0538 36 1 1.9057 -4.2141 -1.2588 37 1 3.2280 -5.4060 -1.2798 38 1 2.6531 -3.3255 -3.4397 39 1 2.3328 -5.0723 -3.5591 40 1 3.9159 -3.7434 -5.4665 41 1 3.9631 -5.5209 -5.3858 42 1 6.4190 -5.4405 -5.0529 43 1 6.3717 -3.6631 -5.1337 44 1 9.1660 -4.5708 -7.3501 45 1 6.2757 -3.6796 -3.4291 46 1 4.9240 -2.5234 -3.3646 47 1 5.9345 -2.7919 -1.1257 48 1 5.6557 -4.5491 -1.2000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:59 Heat of formation + Delta-G solvation = 48.228938 kcal Electronic energy + Delta-G solvation = -29521.650908 eV Core-core repulsion = 25735.400411 eV Total energy + Delta-G solvation = -3786.250497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.21697 -39.88732 -39.25607 -37.18992 -36.34188 -35.02570 -34.03465 -32.30129 -31.86504 -31.02303 -30.14335 -28.76973 -26.96772 -25.39165 -24.46806 -23.44858 -22.96108 -22.39203 -21.56208 -20.25233 -19.51364 -18.67188 -18.05839 -17.79768 -17.09988 -16.98334 -16.59578 -16.51574 -16.01087 -15.60674 -15.32974 -15.22785 -15.21877 -15.12157 -14.47897 -14.38555 -14.23764 -14.11725 -13.99494 -13.81529 -13.47957 -13.20959 -13.10812 -12.94008 -12.75791 -12.48143 -12.31582 -12.22181 -12.03437 -11.88930 -11.75316 -11.56484 -11.43227 -11.33774 -11.23378 -11.06218 -10.83535 -10.54029 -9.78067 -9.17799 -8.97834 -8.21327 -6.32473 0.19592 0.42739 1.11463 1.34878 1.37997 1.41762 1.49576 1.71443 2.16193 2.39127 2.83698 2.95358 3.05919 3.11533 3.24888 3.33763 3.68813 3.72894 3.83622 4.01712 4.12956 4.16167 4.25708 4.33011 4.37740 4.43115 4.46077 4.51458 4.53470 4.60622 4.68055 4.69586 4.80442 4.85587 4.89338 4.96201 5.00531 5.02033 5.05175 5.13097 5.18415 5.42168 5.49961 5.61215 5.63613 5.66380 5.72068 5.76007 6.04801 6.11965 6.26153 6.31089 6.48771 6.75046 6.82690 7.35862 8.90538 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.002806 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.438364 B = 9976.785056 C =10838.176623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.252 4.252 3 C 0.215 3.785 4 N -0.549 5.549 5 C 0.122 3.878 6 C -0.137 4.137 7 C -0.081 4.081 8 C -0.133 4.133 9 C -0.066 4.066 10 C -0.137 4.137 11 C -0.044 4.044 12 C -0.076 4.076 13 C 0.045 3.955 14 N -0.530 5.530 15 C 0.078 3.922 16 C 0.034 3.966 17 C -0.549 4.549 18 H 0.057 0.943 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.966 3.034 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.264 1.264 25 C 0.047 3.953 26 C -0.077 4.077 27 C 0.525 3.475 28 O -0.525 6.525 29 H 0.250 0.750 30 H 0.140 0.860 31 H 0.102 0.898 32 H 0.140 0.860 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.141 0.859 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.023 0.977 39 H 0.085 0.915 40 H 0.006 0.994 41 H 0.069 0.931 42 H 0.000 1.000 43 H -0.004 1.004 44 H 0.265 0.735 45 H 0.066 0.934 46 H 0.020 0.980 47 H 0.070 0.930 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.556 4.746 27.099 30.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.253 4.253 3 C 0.095 3.905 4 N -0.271 5.271 5 C 0.028 3.972 6 C -0.158 4.158 7 C -0.100 4.100 8 C -0.152 4.152 9 C -0.084 4.084 10 C -0.139 4.139 11 C -0.047 4.047 12 C -0.114 4.114 13 C -0.083 4.083 14 N -0.255 5.255 15 C -0.050 4.050 16 C -0.003 4.003 17 C -0.587 4.587 18 H 0.075 0.925 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.790 3.210 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.189 1.189 25 C -0.081 4.081 26 C -0.115 4.115 27 C 0.315 3.685 28 O -0.401 6.401 29 H 0.267 0.733 30 H 0.157 0.843 31 H 0.120 0.880 32 H 0.158 0.842 33 H 0.179 0.821 34 H 0.175 0.825 35 H 0.159 0.841 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.041 0.959 39 H 0.103 0.897 40 H 0.024 0.976 41 H 0.087 0.913 42 H 0.018 0.982 43 H 0.014 0.986 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.038 0.962 47 H 0.089 0.911 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.312 4.705 26.591 30.107 hybrid contribution -0.136 1.246 -1.923 2.295 sum -13.448 5.951 24.668 28.719 Atomic orbital electron populations 1.25834 0.96848 0.96025 0.99135 1.23661 0.95435 1.03846 1.02354 1.18568 0.84337 0.81535 1.06057 1.45975 1.61421 1.13786 1.05926 1.18508 0.99561 0.89949 0.89171 1.20625 1.04907 1.01997 0.88282 1.21288 0.96028 0.92041 1.00604 1.21450 1.00630 0.98476 0.94633 1.20560 0.97184 0.98057 0.92610 1.19666 1.06316 0.95232 0.92715 1.19802 0.98407 0.92727 0.93758 1.21320 0.97966 0.98866 0.93213 1.22237 0.89968 0.99892 0.96187 1.62070 1.07137 1.46562 1.09713 1.21979 0.98304 0.98727 0.85954 1.19017 0.91290 0.95221 0.94761 1.21591 0.92771 1.51097 0.93239 0.92517 1.25947 0.95242 0.94532 1.03793 1.70091 0.98071 1.51144 1.37581 0.85490 0.77277 0.79147 0.79057 1.19580 1.20454 1.18915 1.22179 0.97572 0.92922 0.95412 1.21332 0.92843 1.03928 0.93368 1.20963 0.75784 0.88578 0.83184 1.90747 1.53009 1.71827 1.24484 0.73338 0.84285 0.88027 0.84197 0.82138 0.82527 0.84085 0.90712 0.87831 0.95882 0.89693 0.97576 0.91282 0.98155 0.98586 0.92662 0.91526 0.96153 0.91148 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 19.25 74.32 1.43 -1.39 16 2 C -0.25 -5.31 13.68 31.13 0.43 -4.88 16 3 C 0.22 4.30 6.21 84.57 0.53 4.83 16 4 N -0.55 -13.49 2.70 -640.89 -1.73 -15.21 16 5 C 0.12 2.51 6.70 38.36 0.26 2.77 16 6 C -0.14 -1.93 9.73 22.46 0.22 -1.72 16 7 C -0.08 -0.83 10.02 22.21 0.22 -0.61 16 8 C -0.13 -1.47 10.06 22.32 0.22 -1.25 16 9 C -0.07 -1.04 10.03 22.17 0.22 -0.82 16 10 C -0.14 -2.91 5.00 -19.80 -0.10 -3.01 16 11 C -0.04 -1.19 0.67 -53.82 -0.04 -1.23 16 12 C -0.08 -2.03 4.94 30.52 0.15 -1.88 16 13 C 0.05 1.54 5.19 86.36 0.45 1.99 16 14 N -0.53 -21.36 4.79 -895.96 -4.29 -25.65 16 15 C 0.08 3.68 5.21 86.30 0.45 4.13 16 16 C 0.03 1.94 4.22 29.85 0.13 2.07 16 17 C -0.55 -33.00 9.11 25.60 0.23 -32.77 16 18 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 19 C 0.00 0.18 5.46 84.66 0.46 0.64 16 20 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 21 Si 0.97 45.92 29.54 68.60 2.03 47.94 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 C 0.05 1.91 4.63 86.36 0.40 2.31 16 26 C -0.08 -2.35 4.93 30.52 0.15 -2.20 16 27 C 0.53 16.53 6.52 87.79 0.57 17.10 16 28 O -0.53 -20.80 13.71 -3.07 -0.04 -20.84 16 29 H 0.25 2.32 7.80 -4.42 -0.03 2.29 16 30 H 0.14 1.74 7.61 -2.39 -0.02 1.72 16 31 H 0.10 2.21 7.96 -2.39 -0.02 2.19 16 32 H 0.14 1.40 7.69 -2.91 -0.02 1.38 16 33 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 34 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 36 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.02 0.91 6.13 -2.39 -0.01 0.89 16 39 H 0.08 2.65 8.12 -2.39 -0.02 2.63 16 40 H 0.01 0.30 8.08 -2.38 -0.02 0.28 16 41 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 43 H 0.00 -0.25 6.20 -2.39 -0.01 -0.26 16 44 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 45 H 0.07 3.06 5.79 -2.39 -0.01 3.05 16 46 H 0.02 0.92 6.13 -2.39 -0.01 0.91 16 47 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -77.82 387.50 3.58 -74.23 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.95 Total: 13.29 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 6.38 Total: -15.90 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -5.74 Total: -98.73 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.04 Total: -20.84 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -77.82 3.58 -74.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.461 kcal (2) G-P(sol) polarization free energy of solvation -77.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds