Wall clock time and date at job start Tue Mar 31 2020 20:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47189 * 39.05465 * 3 2 1 5 5 C 1.39718 * 123.93590 * 90.02190 * 4 3 2 6 6 C 1.39265 * 130.79654 * 0.03440 * 5 4 3 7 7 C 1.37929 * 120.23904 * 179.91455 * 6 5 4 8 8 C 1.38309 * 120.30629 * 0.02562 * 7 6 5 9 9 C 1.38334 * 119.85328 * 0.02562 * 8 7 6 10 10 C 1.37712 * 120.07793 * 0.02562 * 9 8 7 11 11 C 1.49862 * 133.80597 * 179.97438 * 10 9 8 12 12 C 1.53758 * 112.05464 * 57.76961 * 11 10 9 13 13 C 1.54556 * 102.87870 * 204.98266 * 12 11 10 14 14 N 1.47545 * 107.29361 * 21.00890 * 13 12 11 15 15 C 1.46902 * 111.00076 * 123.23855 * 14 13 12 16 16 C 1.52996 * 109.46935 * 69.87421 * 15 14 13 17 17 C 1.53002 * 109.46736 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47153 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 C 1.48104 * 108.63671 * 0.92294 * 14 13 12 27 27 C 1.34841 * 123.93684 * 270.02503 * 4 3 2 28 28 O 1.21292 * 126.76549 * 359.88057 * 27 4 3 29 29 H 4.40644 * 5.51424 * 180.02562 * 4 1 2 30 30 H 1.08994 * 109.47157 * 279.05270 * 3 2 1 31 31 H 1.08996 * 109.46918 * 159.04990 * 3 2 1 32 32 H 1.07998 * 119.88069 * 359.90362 * 6 5 4 33 33 H 1.08007 * 119.84756 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.07149 * 179.97438 * 8 7 6 35 35 H 1.08001 * 119.96701 * 180.02562 * 9 8 7 36 36 H 1.09008 * 110.72971 * 86.63305 * 12 11 10 37 37 H 1.08995 * 110.73107 * 323.33371 * 12 11 10 38 38 H 1.09000 * 109.87752 * 261.58876 * 13 12 11 39 39 H 1.08999 * 110.00631 * 140.50500 * 13 12 11 40 40 H 1.09007 * 109.46896 * 309.87353 * 15 14 13 41 41 H 1.09001 * 109.47104 * 189.87335 * 15 14 13 42 42 H 1.08999 * 109.46983 * 60.00720 * 16 15 14 43 43 H 1.08993 * 109.47310 * 300.00160 * 16 15 14 44 44 H 1.09004 * 109.47178 * 60.00488 * 17 16 15 45 45 H 1.08993 * 109.47411 * 300.00171 * 17 16 15 46 46 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 47 47 H 1.09003 * 110.39933 * 96.10284 * 26 14 13 48 48 H 1.09007 * 110.39652 * 218.50319 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0717 -0.8703 5 6 3.3952 -0.9122 -2.2337 6 6 3.2736 0.2030 -3.0589 7 6 3.5977 0.1159 -4.3967 8 6 4.0456 -1.0791 -4.9299 9 6 4.1685 -2.1923 -4.1180 10 6 3.8452 -2.1111 -2.7818 11 6 3.8594 -3.0928 -1.6496 12 6 5.2550 -3.6990 -1.4285 13 6 4.9395 -5.0518 -0.7508 14 7 3.5398 -5.3884 -1.0740 15 6 3.4521 -6.6976 -1.7345 16 6 3.7803 -7.8005 -0.7261 17 6 3.6883 -9.1641 -1.4140 18 6 4.0122 -10.2505 -0.4209 19 1 4.2585 -9.9939 0.5988 20 6 3.9940 -11.5718 -0.8142 21 7 3.6889 -11.8845 -2.0547 22 14 4.3947 -12.9184 0.4168 23 1 5.8535 -13.1949 0.3905 24 1 3.9989 -12.4779 1.7786 25 1 3.6504 -14.1528 0.0600 26 6 2.9832 -4.3205 -1.9362 27 6 3.3859 -2.3277 -0.4488 28 8 3.2539 -2.7552 0.6786 29 1 -1.0498 -0.0001 -0.0004 30 1 3.0094 -0.1609 1.0148 31 1 3.0089 0.9605 -0.3674 32 1 2.9240 1.1394 -2.6499 33 1 3.5014 0.9849 -5.0309 34 1 4.2979 -1.1432 -5.9781 35 1 4.5185 -3.1263 -4.5323 36 1 5.8503 -3.0669 -0.7695 37 1 5.7638 -3.8534 -2.3799 38 1 5.0594 -4.9624 0.3289 39 1 5.6048 -5.8253 -1.1346 40 1 4.1631 -6.7365 -2.5598 41 1 2.4423 -6.8443 -2.1177 42 1 3.0692 -7.7616 0.0990 43 1 4.7900 -7.6537 -0.3430 44 1 4.3991 -9.2033 -2.2394 45 1 2.6784 -9.3106 -1.7968 46 1 3.4805 -11.1853 -2.6939 47 1 3.0571 -4.6031 -2.9864 48 1 1.9461 -4.1180 -1.6685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:51 Heat of formation + Delta-G solvation = 62.677477 kcal Electronic energy + Delta-G solvation = -28766.471014 eV Core-core repulsion = 24980.847053 eV Total energy + Delta-G solvation = -3785.623961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.34226 -38.89775 -38.43718 -36.36599 -35.00594 -33.92627 -32.84508 -31.37659 -30.43841 -29.80323 -28.61841 -27.90629 -25.85880 -23.72046 -22.96801 -22.81436 -21.72548 -21.22835 -20.16942 -19.64692 -18.84610 -17.52262 -17.29585 -16.70777 -16.31642 -16.02639 -15.71560 -15.18727 -14.67917 -14.60997 -14.38343 -14.25066 -13.86721 -13.67684 -13.62486 -13.47008 -13.31804 -13.07639 -12.76178 -12.63205 -12.26848 -11.90786 -11.75231 -11.69905 -11.46187 -11.12046 -11.07867 -10.92387 -10.88295 -10.65870 -10.64607 -10.56557 -10.07754 -9.98853 -9.74023 -9.66401 -9.24697 -8.47334 -8.32668 -8.26040 -8.07618 -6.30127 -3.98096 0.80669 0.94127 1.84080 2.20046 2.40986 2.88002 3.36931 3.47642 3.52045 3.67845 3.77425 3.83554 3.95069 4.22710 4.41030 4.46233 4.54342 4.61134 4.62776 4.70830 4.79910 4.97515 4.98979 5.11808 5.18857 5.28290 5.38177 5.47090 5.49176 5.51680 5.55050 5.64509 5.67584 5.70090 5.78271 5.94108 6.00187 6.11959 6.18395 6.22779 6.25121 6.34913 6.63407 6.67754 6.71887 7.01711 7.17144 7.17279 7.32567 7.51138 7.63287 7.66434 8.30784 8.54493 8.95984 9.73922 11.10724 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.002378 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.314729 B =11770.479259 C =12671.623829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.219 4.219 3 C 0.223 3.777 4 N -0.557 5.557 5 C 0.150 3.850 6 C -0.140 4.140 7 C -0.084 4.084 8 C -0.140 4.140 9 C -0.060 4.060 10 C -0.124 4.124 11 C -0.065 4.065 12 C -0.109 4.109 13 C 0.045 3.955 14 N -0.521 5.521 15 C 0.051 3.949 16 C -0.096 4.096 17 C 0.009 3.991 18 C -0.598 4.598 19 H 0.049 0.951 20 C 0.012 3.988 21 N -0.917 5.917 22 Si 1.071 2.929 23 H -0.288 1.288 24 H -0.288 1.288 25 H -0.285 1.285 26 C 0.076 3.924 27 C 0.547 3.453 28 O -0.464 6.464 29 H 0.221 0.779 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.004 0.996 45 H 0.006 0.994 46 H 0.268 0.732 47 H 0.061 0.939 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 31.484 -4.767 31.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.220 4.220 3 C 0.103 3.897 4 N -0.280 5.280 5 C 0.055 3.945 6 C -0.161 4.161 7 C -0.103 4.103 8 C -0.159 4.159 9 C -0.079 4.079 10 C -0.127 4.127 11 C -0.069 4.069 12 C -0.148 4.148 13 C -0.083 4.083 14 N -0.245 5.245 15 C -0.077 4.077 16 C -0.134 4.134 17 C -0.029 4.029 18 C -0.636 4.636 19 H 0.067 0.933 20 C -0.191 4.191 21 N -0.553 5.553 22 Si 0.900 3.100 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.210 1.210 26 C -0.052 4.052 27 C 0.335 3.665 28 O -0.334 6.334 29 H 0.238 0.762 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.350 29.556 -3.303 29.742 hybrid contribution -0.049 1.930 -0.921 2.139 sum -0.399 31.486 -4.223 31.770 Atomic orbital electron populations 1.25039 0.95982 0.98326 0.99038 1.23276 0.94720 1.02188 1.01836 1.18351 0.84256 0.90840 0.96290 1.46136 1.62546 1.11759 1.07550 1.18316 0.97527 0.95577 0.83091 1.20306 1.05624 0.96732 0.93451 1.20882 0.97363 0.98125 0.93882 1.21048 1.02252 0.92607 1.00030 1.20268 0.97535 0.99188 0.90859 1.19453 1.05261 0.93543 0.94426 1.20306 0.99518 0.95466 0.91606 1.22556 0.92979 0.97166 1.02070 1.22945 0.89286 0.94544 1.01521 1.63739 1.17139 1.01836 1.41781 1.22511 1.00707 0.88247 0.96210 1.21487 1.00501 0.93871 0.97544 1.19207 0.95865 0.91707 0.96087 1.22097 1.51040 0.92950 0.97527 0.93275 1.25854 0.94509 0.99259 0.99447 1.70753 1.43860 1.37001 1.03725 0.83518 0.76532 0.75470 0.74519 1.21513 1.21459 1.21035 1.22673 0.98263 0.87592 0.96641 1.20036 0.76260 0.80756 0.89405 1.90818 1.49883 1.71908 1.20741 0.76234 0.86895 0.87449 0.85869 0.85210 0.85213 0.85376 0.90335 0.89841 0.89939 0.91579 0.95104 0.91342 0.92375 0.93272 0.97800 0.97560 0.92171 0.92038 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 19.25 29.55 0.57 -0.91 16 2 C -0.22 -2.19 13.68 -37.12 -0.51 -2.70 16 3 C 0.22 1.94 6.23 -6.83 -0.04 1.89 16 4 N -0.56 -6.09 2.71 -116.64 -0.32 -6.40 16 5 C 0.15 1.49 6.71 -83.49 -0.56 0.93 16 6 C -0.14 -1.06 9.73 -39.31 -0.38 -1.45 16 7 C -0.08 -0.54 10.02 -39.67 -0.40 -0.94 16 8 C -0.14 -0.96 10.06 -39.52 -0.40 -1.36 16 9 C -0.06 -0.51 9.98 -39.74 -0.40 -0.91 16 10 C -0.12 -1.27 5.10 -104.83 -0.53 -1.81 16 11 C -0.06 -0.79 0.78 -156.86 -0.12 -0.92 16 12 C -0.11 -1.27 5.95 -25.52 -0.15 -1.42 16 13 C 0.04 0.66 6.07 -2.65 -0.02 0.64 16 14 N -0.52 -8.52 5.16 -231.67 -1.20 -9.72 16 15 C 0.05 0.91 4.53 -3.82 -0.02 0.89 16 16 C -0.10 -2.11 5.18 -26.73 -0.14 -2.25 16 17 C 0.01 0.23 4.28 -27.88 -0.12 0.12 16 18 C -0.60 -17.72 9.11 -34.44 -0.31 -18.03 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 21 N -0.92 -28.83 13.65 55.43 0.76 -28.07 16 22 Si 1.07 26.17 29.90 -169.99 -5.08 21.09 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.08 1.06 5.71 -2.88 -0.02 1.04 16 27 C 0.55 7.50 6.82 -11.28 -0.08 7.43 16 28 O -0.46 -7.88 17.62 5.55 0.10 -7.79 16 29 H 0.22 1.22 7.80 -54.10 -0.42 0.80 16 30 H 0.11 0.95 7.97 -51.93 -0.41 0.53 16 31 H 0.11 0.59 7.62 -51.93 -0.40 0.19 16 32 H 0.12 0.71 7.70 -52.49 -0.40 0.31 16 33 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.08 0.86 8.00 -51.92 -0.42 0.44 16 37 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 0.98 6.91 -51.93 -0.36 0.62 16 40 H 0.03 0.53 7.96 -51.93 -0.41 0.12 16 41 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.05 1.07 7.14 -51.93 -0.37 0.70 16 44 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 45 H 0.01 0.17 8.00 -51.93 -0.42 -0.25 16 46 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 47 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 48 H 0.08 1.17 8.02 -51.93 -0.42 0.75 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -35.56 399.39 -10.73 -46.29 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -7.29 Total: -1.94 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -3.72 Total: -19.48 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.76 Total: -44.20 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.10 Total: -7.79 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.08 Total: 21.09 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.56 -10.73 -46.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.966 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds