Wall clock time and date at job start Tue Mar 31 2020 20:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47189 * 39.05465 * 3 2 1 5 5 C 1.39718 * 123.93590 * 90.02190 * 4 3 2 6 6 C 1.39265 * 130.79654 * 0.03440 * 5 4 3 7 7 C 1.37929 * 120.23904 * 179.91455 * 6 5 4 8 8 C 1.38309 * 120.30629 * 0.02562 * 7 6 5 9 9 C 1.38334 * 119.85328 * 0.02562 * 8 7 6 10 10 C 1.37712 * 120.07793 * 0.02562 * 9 8 7 11 11 C 1.49862 * 133.80597 * 179.97438 * 10 9 8 12 12 C 1.53758 * 112.05464 * 57.76961 * 11 10 9 13 13 C 1.54556 * 102.87870 * 204.98266 * 12 11 10 14 14 N 1.47545 * 107.29361 * 21.00890 * 13 12 11 15 15 C 1.46902 * 111.00076 * 123.23855 * 14 13 12 16 16 C 1.52996 * 109.46935 * 69.87421 * 15 14 13 17 17 C 1.53002 * 109.46736 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47153 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 C 1.48104 * 108.63671 * 0.92294 * 14 13 12 27 27 C 1.34841 * 123.93684 * 270.02503 * 4 3 2 28 28 O 1.21292 * 126.76549 * 359.88057 * 27 4 3 29 29 H 4.40644 * 5.51424 * 180.02562 * 4 1 2 30 30 H 1.08994 * 109.47157 * 279.05270 * 3 2 1 31 31 H 1.08996 * 109.46918 * 159.04990 * 3 2 1 32 32 H 1.07998 * 119.88069 * 359.90362 * 6 5 4 33 33 H 1.08007 * 119.84756 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.07149 * 179.97438 * 8 7 6 35 35 H 1.08001 * 119.96701 * 180.02562 * 9 8 7 36 36 H 1.09008 * 110.72971 * 86.63305 * 12 11 10 37 37 H 1.08995 * 110.73107 * 323.33371 * 12 11 10 38 38 H 1.09000 * 109.87752 * 261.58876 * 13 12 11 39 39 H 1.08999 * 110.00631 * 140.50500 * 13 12 11 40 40 H 1.09007 * 109.46896 * 309.87353 * 15 14 13 41 41 H 1.09001 * 109.47104 * 189.87335 * 15 14 13 42 42 H 1.08999 * 109.46983 * 60.00720 * 16 15 14 43 43 H 1.08993 * 109.47310 * 300.00160 * 16 15 14 44 44 H 1.09004 * 109.47178 * 60.00488 * 17 16 15 45 45 H 1.08993 * 109.47411 * 300.00171 * 17 16 15 46 46 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 47 47 H 1.09003 * 110.39933 * 96.10284 * 26 14 13 48 48 H 1.09007 * 110.39652 * 218.50319 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0717 -0.8703 5 6 3.3952 -0.9122 -2.2337 6 6 3.2736 0.2030 -3.0589 7 6 3.5977 0.1159 -4.3967 8 6 4.0456 -1.0791 -4.9299 9 6 4.1685 -2.1923 -4.1180 10 6 3.8452 -2.1111 -2.7818 11 6 3.8594 -3.0928 -1.6496 12 6 5.2550 -3.6990 -1.4285 13 6 4.9395 -5.0518 -0.7508 14 7 3.5398 -5.3884 -1.0740 15 6 3.4521 -6.6976 -1.7345 16 6 3.7803 -7.8005 -0.7261 17 6 3.6883 -9.1641 -1.4140 18 6 4.0122 -10.2505 -0.4209 19 1 4.2585 -9.9939 0.5988 20 6 3.9940 -11.5718 -0.8142 21 7 3.6889 -11.8845 -2.0547 22 14 4.3947 -12.9184 0.4168 23 1 5.8535 -13.1949 0.3905 24 1 3.9989 -12.4779 1.7786 25 1 3.6504 -14.1528 0.0600 26 6 2.9832 -4.3205 -1.9362 27 6 3.3859 -2.3277 -0.4488 28 8 3.2539 -2.7552 0.6786 29 1 -1.0498 -0.0001 -0.0004 30 1 3.0094 -0.1609 1.0148 31 1 3.0089 0.9605 -0.3674 32 1 2.9240 1.1394 -2.6499 33 1 3.5014 0.9849 -5.0309 34 1 4.2979 -1.1432 -5.9781 35 1 4.5185 -3.1263 -4.5323 36 1 5.8503 -3.0669 -0.7695 37 1 5.7638 -3.8534 -2.3799 38 1 5.0594 -4.9624 0.3289 39 1 5.6048 -5.8253 -1.1346 40 1 4.1631 -6.7365 -2.5598 41 1 2.4423 -6.8443 -2.1177 42 1 3.0692 -7.7616 0.0990 43 1 4.7900 -7.6537 -0.3430 44 1 4.3991 -9.2033 -2.2394 45 1 2.6784 -9.3106 -1.7968 46 1 3.4805 -11.1853 -2.6939 47 1 3.0571 -4.6031 -2.9864 48 1 1.9461 -4.1180 -1.6685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:50 Heat of formation + Delta-G solvation = 41.927686 kcal Electronic energy + Delta-G solvation = -28767.370793 eV Core-core repulsion = 24980.847053 eV Total energy + Delta-G solvation = -3786.523740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.19539 -39.84566 -39.43919 -37.21401 -36.59434 -35.24384 -34.10240 -32.69008 -31.22773 -30.94279 -29.59828 -28.73583 -27.57172 -25.11973 -24.36575 -23.47701 -22.92327 -22.45446 -21.48042 -20.72350 -19.51947 -18.95057 -18.33744 -18.05135 -17.23463 -16.92306 -16.75699 -16.32230 -15.70749 -15.60102 -15.51790 -15.29862 -15.22177 -15.13440 -14.71965 -14.35048 -14.28238 -14.23833 -14.01699 -13.95329 -13.46987 -13.33899 -12.94708 -12.73553 -12.67878 -12.57130 -12.30719 -12.20372 -11.98622 -11.89070 -11.78808 -11.64673 -11.62874 -11.59484 -11.34242 -10.95752 -10.67802 -10.55212 -9.87061 -9.35902 -9.01389 -8.70769 -6.40508 0.11822 0.35434 1.07190 1.31481 1.50665 1.60400 1.71104 1.78805 2.14091 2.54782 2.74430 2.76505 2.93789 3.14104 3.24569 3.33899 3.48615 3.55999 3.75984 3.97168 4.05575 4.09335 4.09982 4.16424 4.23351 4.25478 4.40663 4.41428 4.49940 4.55975 4.58039 4.60521 4.72028 4.73378 4.79133 4.85928 4.89187 4.92734 4.98575 5.03215 5.07355 5.40847 5.44181 5.50529 5.54328 5.58059 5.66343 5.88887 5.94707 6.04719 6.06372 6.17604 6.48537 6.57932 6.72406 7.40745 8.70511 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.002378 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.314729 B =11770.479259 C =12671.623829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.252 4.252 3 C 0.217 3.783 4 N -0.552 5.552 5 C 0.128 3.872 6 C -0.136 4.136 7 C -0.078 4.078 8 C -0.134 4.134 9 C -0.068 4.068 10 C -0.138 4.138 11 C -0.060 4.060 12 C -0.099 4.099 13 C 0.044 3.956 14 N -0.540 5.540 15 C 0.065 3.935 16 C -0.082 4.082 17 C 0.012 3.988 18 C -0.620 4.620 19 H 0.045 0.955 20 C -0.039 4.039 21 N -0.937 5.937 22 Si 1.120 2.880 23 H -0.269 1.269 24 H -0.273 1.273 25 H -0.280 1.280 26 C 0.079 3.921 27 C 0.538 3.462 28 O -0.513 6.513 29 H 0.247 0.753 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.048 0.952 44 H -0.007 1.007 45 H -0.011 1.011 46 H 0.256 0.744 47 H 0.077 0.923 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 33.646 -6.277 34.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.253 4.253 3 C 0.097 3.903 4 N -0.274 5.274 5 C 0.033 3.967 6 C -0.157 4.157 7 C -0.097 4.097 8 C -0.153 4.153 9 C -0.086 4.086 10 C -0.141 4.141 11 C -0.064 4.064 12 C -0.137 4.137 13 C -0.084 4.084 14 N -0.264 5.264 15 C -0.062 4.062 16 C -0.120 4.120 17 C -0.025 4.025 18 C -0.658 4.658 19 H 0.064 0.936 20 C -0.236 4.236 21 N -0.575 5.575 22 Si 0.941 3.059 23 H -0.195 1.195 24 H -0.198 1.198 25 H -0.205 1.205 26 C -0.049 4.049 27 C 0.327 3.673 28 O -0.387 6.387 29 H 0.263 0.737 30 H 0.126 0.874 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.173 0.827 35 H 0.154 0.846 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.011 0.989 45 H 0.007 0.993 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.164 31.786 -4.857 32.156 hybrid contribution -0.265 1.374 -0.531 1.497 sum -0.101 33.161 -5.388 33.596 Atomic orbital electron populations 1.25839 0.96949 0.97396 0.98070 1.23749 0.95591 1.03123 1.02795 1.18609 0.83953 0.91610 0.96078 1.46099 1.61681 1.11232 1.08437 1.18567 0.99006 0.96519 0.82586 1.20629 1.04675 0.96663 0.93731 1.21307 0.95689 0.99070 0.93605 1.21417 1.00787 0.92040 1.01052 1.20481 0.97572 1.00360 0.90186 1.19397 1.07071 0.92967 0.94714 1.20183 0.98930 0.95100 0.92219 1.22503 0.93158 0.95258 1.02801 1.22894 0.88343 0.96327 1.00815 1.63574 1.18503 1.01726 1.42621 1.22206 1.00798 0.88110 0.95115 1.21250 1.00040 0.93099 0.97604 1.19125 0.94290 0.93644 0.95467 1.22520 1.51052 0.94259 0.97982 0.93622 1.27459 0.93514 1.02261 1.00379 1.70886 1.45467 1.36629 1.04488 0.82906 0.77486 0.72743 0.72793 1.19456 1.19793 1.20499 1.22622 0.97732 0.87652 0.96882 1.20309 0.75967 0.81893 0.89126 1.90778 1.52313 1.73118 1.22493 0.73663 0.87421 0.84103 0.83958 0.82061 0.82679 0.84570 0.89731 0.87750 0.91719 0.91811 0.94056 0.91474 0.93968 0.93314 0.98861 0.99259 0.93446 0.90458 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 19.25 74.32 1.43 -1.37 16 2 C -0.25 -4.91 13.68 31.12 0.43 -4.49 16 3 C 0.22 3.68 6.23 84.57 0.53 4.20 16 4 N -0.55 -11.89 2.71 -641.27 -1.74 -13.63 16 5 C 0.13 2.31 6.71 38.39 0.26 2.57 16 6 C -0.14 -1.64 9.73 22.44 0.22 -1.42 16 7 C -0.08 -0.68 10.02 22.21 0.22 -0.46 16 8 C -0.13 -1.32 10.06 22.31 0.22 -1.10 16 9 C -0.07 -0.97 9.98 22.17 0.22 -0.75 16 10 C -0.14 -2.63 5.10 -20.00 -0.10 -2.74 16 11 C -0.06 -1.46 0.78 -53.71 -0.04 -1.51 16 12 C -0.10 -2.26 5.95 31.38 0.19 -2.07 16 13 C 0.04 1.31 6.07 86.71 0.53 1.84 16 14 N -0.54 -18.10 5.16 -886.88 -4.58 -22.68 16 15 C 0.07 2.40 4.53 86.30 0.39 2.79 16 16 C -0.08 -3.71 5.18 30.59 0.16 -3.55 16 17 C 0.01 0.67 4.28 29.85 0.13 0.80 16 18 C -0.62 -37.45 9.11 25.60 0.23 -37.21 16 19 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 20 C -0.04 -2.35 5.46 84.65 0.46 -1.89 16 21 N -0.94 -59.75 13.65 21.45 0.29 -59.46 16 22 Si 1.12 52.31 29.90 68.60 2.05 54.36 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 C 0.08 2.19 5.71 86.25 0.49 2.69 16 27 C 0.54 15.17 6.82 87.44 0.60 15.76 16 28 O -0.51 -18.47 17.62 -3.07 -0.05 -18.52 16 29 H 0.25 2.34 7.80 -4.43 -0.03 2.31 16 30 H 0.11 1.89 7.97 -2.39 -0.02 1.87 16 31 H 0.14 1.30 7.62 -2.39 -0.02 1.28 16 32 H 0.14 1.12 7.70 -2.91 -0.02 1.09 16 33 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 34 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 35 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 36 H 0.08 1.83 8.00 -2.38 -0.02 1.81 16 37 H 0.10 1.94 8.04 -2.39 -0.02 1.92 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 1.91 6.91 -2.39 -0.02 1.89 16 40 H 0.04 1.42 7.96 -2.38 -0.02 1.40 16 41 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 42 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.05 2.18 7.14 -2.39 -0.02 2.16 16 44 H -0.01 -0.39 8.01 -2.39 -0.02 -0.41 16 45 H -0.01 -0.63 8.00 -2.39 -0.02 -0.65 16 46 H 0.26 16.45 7.22 -92.71 -0.67 15.78 16 47 H 0.08 1.88 7.69 -2.39 -0.02 1.86 16 48 H 0.07 1.99 8.02 -2.38 -0.02 1.97 16 Total: -1.00 -79.43 399.39 3.57 -75.86 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.04 Total: 11.97 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 6.56 Total: -27.89 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -6.02 Total: -95.77 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.05 Total: -18.52 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 2.05 Total: 54.36 kcal Total: -79.43 3.57 -75.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.784 kcal (2) G-P(sol) polarization free energy of solvation -79.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds