Wall clock time and date at job start Tue Mar 31 2020 20:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47174 * 272.03360 * 3 2 1 5 5 C 1.46883 * 124.37261 * 90.00465 * 4 3 2 6 6 C 1.54698 * 105.51905 * 163.13907 * 5 4 3 7 7 C 1.53616 * 101.54624 * 24.50511 * 6 5 4 8 8 C 1.53248 * 111.06088 * 215.00138 * 7 6 5 9 9 C 1.54640 * 104.67532 * 238.99748 * 8 7 6 10 10 N 1.48649 * 104.63446 * 23.68977 * 9 8 7 11 11 C 1.46902 * 111.00068 * 201.48845 * 10 9 8 12 12 C 1.50697 * 109.47373 * 283.02854 * 11 10 9 13 13 C 1.37637 * 120.12421 * 264.37460 * 12 11 10 14 14 C 1.38620 * 120.24591 * 179.97438 * 13 12 11 15 15 C 1.38661 * 120.50145 * 0.02606 * 14 13 12 16 16 C 1.37605 * 120.24589 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.12850 * 84.09592 * 12 11 10 18 18 C 1.41397 * 120.24159 * 359.97438 * 17 12 11 19 19 H 1.08002 * 120.00266 * 28.40587 * 18 17 12 20 20 C 1.39948 * 120.00181 * 208.39444 * 18 17 12 21 21 N 1.30832 * 119.99666 * 12.14538 * 20 18 17 22 22 Si 1.86794 * 120.00225 * 192.13914 * 20 18 17 23 23 H 1.48499 * 109.47376 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47086 * 120.00598 * 22 20 18 25 25 H 1.48508 * 109.47036 * 240.00370 * 22 20 18 26 26 C 1.48801 * 104.38354 * 321.14615 * 10 9 8 27 27 C 1.34756 * 124.37333 * 269.96634 * 4 3 2 28 28 O 1.21283 * 125.13546 * 1.03651 * 27 4 3 29 29 H 4.40643 * 5.51416 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46536 * 152.03690 * 3 2 1 31 31 H 1.08991 * 109.47493 * 32.03818 * 3 2 1 32 32 H 1.08998 * 110.23468 * 44.12619 * 5 4 3 33 33 H 1.09000 * 110.23097 * 282.15502 * 5 4 3 34 34 H 1.09003 * 111.01755 * 142.58029 * 6 5 4 35 35 H 1.08998 * 111.01746 * 266.42662 * 6 5 4 36 36 H 1.08999 * 110.39792 * 357.79518 * 8 7 6 37 37 H 1.09001 * 110.39557 * 120.19724 * 8 7 6 38 38 H 1.09004 * 110.40880 * 142.48211 * 9 8 7 39 39 H 1.09006 * 110.40149 * 264.90212 * 9 8 7 40 40 H 1.08997 * 109.46583 * 43.03067 * 11 10 9 41 41 H 1.09000 * 109.46617 * 163.02814 * 11 10 9 42 42 H 1.07998 * 119.88150 * 0.02562 * 13 12 11 43 43 H 1.07992 * 119.75238 * 179.97438 * 14 13 12 44 44 H 1.07994 * 119.87500 * 179.97438 * 15 14 13 45 45 H 1.07996 * 120.12105 * 179.97438 * 16 15 14 46 46 H 0.96992 * 119.99775 * 179.97438 * 21 20 18 47 47 H 1.09010 * 110.45202 * 279.81749 * 26 10 9 48 48 H 1.08991 * 110.45994 * 157.25807 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0481 1.3804 5 6 3.4115 -1.2873 2.1186 6 6 4.2892 -0.8656 3.3206 7 6 3.8979 0.6109 3.4841 8 6 5.0979 1.4524 3.9315 9 6 4.6567 2.0815 5.2735 10 7 3.5988 1.1713 5.7851 11 6 2.7363 1.8592 6.7552 12 6 3.4519 1.9650 8.0772 13 6 3.2296 1.0273 9.0599 14 6 3.8868 1.1218 10.2767 15 6 4.7738 2.1598 10.5188 16 6 5.0105 3.1091 9.5511 17 6 4.3541 3.0192 8.3095 18 6 4.5952 3.9847 7.3050 19 1 3.8261 4.2165 6.5830 20 6 5.8303 4.6401 7.2463 21 7 6.8377 4.2020 7.9569 22 14 6.0407 6.1403 6.1534 23 1 4.7605 6.4303 5.4590 24 1 6.4279 7.3081 6.9848 25 1 7.1008 5.8753 5.1477 26 6 2.8306 0.7790 4.5726 27 6 3.3881 1.0381 2.1365 28 8 3.2298 2.1873 1.7826 29 1 -1.0500 -0.0002 0.0000 30 1 3.0088 0.9085 -0.4819 31 1 3.0098 -0.8702 -0.5451 32 1 3.9521 -1.9906 1.4853 33 1 2.4807 -1.7333 2.4694 34 1 4.0334 -1.4388 4.2118 35 1 5.3488 -0.9654 3.0851 36 1 5.9726 0.8189 4.0784 37 1 5.3104 2.2308 3.1986 38 1 5.4949 2.1192 5.9694 39 1 4.2522 3.0805 5.1100 40 1 2.5017 2.8583 6.3880 41 1 1.8135 1.2940 6.8856 42 1 2.5412 0.2144 8.8821 43 1 3.7061 0.3819 11.0423 44 1 5.2800 2.2239 11.4706 45 1 5.7014 3.9169 9.7419 46 1 7.6938 4.6560 7.9160 47 1 2.1261 1.5640 4.2975 48 1 2.3069 -0.1619 4.7413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274346759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:27 Heat of formation + Delta-G solvation = 58.030354 kcal Electronic energy + Delta-G solvation = -29705.475421 eV Core-core repulsion = 25919.649945 eV Total energy + Delta-G solvation = -3785.825475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.06861 -38.33160 -37.05247 -36.45622 -34.34377 -33.61714 -32.45870 -30.55322 -29.61478 -29.04001 -27.86374 -27.17838 -25.70627 -24.52162 -23.00801 -21.39581 -20.98412 -20.72290 -19.42577 -18.89044 -18.45637 -17.06049 -16.65634 -16.33825 -15.67516 -15.51123 -14.85759 -14.71053 -14.47201 -14.10551 -13.96026 -13.80026 -13.59413 -13.34504 -13.03540 -12.96734 -12.67479 -12.51839 -12.47784 -11.96614 -11.80613 -11.52385 -11.28245 -11.09368 -10.96494 -10.90655 -10.84277 -10.72791 -10.60626 -10.44234 -10.40214 -10.34264 -10.18676 -9.57441 -9.42694 -9.33125 -9.12190 -9.01806 -7.72060 -7.29380 -7.25862 -6.67967 -4.30642 2.18120 2.55354 2.59094 2.80674 3.01609 3.11563 3.16991 3.25547 3.26503 3.97628 4.13974 4.22013 4.41623 4.65337 4.68932 4.86832 4.90411 5.03953 5.14231 5.19740 5.29016 5.41497 5.67339 5.73722 5.74303 5.80730 5.87345 5.89412 6.02220 6.06095 6.12235 6.24154 6.29543 6.33693 6.42716 6.46280 6.56678 6.73368 6.78309 6.93172 7.08104 7.15245 7.30932 7.35283 7.40692 7.57408 7.66803 7.75905 7.97039 8.08175 8.13707 8.14073 8.34789 8.67026 8.93837 9.01126 10.25894 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.003639 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.320861 B = 7691.527785 C = 8937.082410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.209 4.209 3 C 0.235 3.765 4 N -0.624 5.624 5 C 0.103 3.897 6 C -0.115 4.115 7 C -0.095 4.095 8 C -0.110 4.110 9 C 0.051 3.949 10 N -0.494 5.494 11 C 0.112 3.888 12 C -0.181 4.181 13 C -0.078 4.078 14 C -0.239 4.239 15 C -0.109 4.109 16 C -0.158 4.158 17 C 0.121 3.879 18 C -0.458 4.458 19 H 0.076 0.924 20 C 0.080 3.920 21 N -0.799 5.799 22 Si 0.894 3.106 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.273 1.273 26 C 0.054 3.946 27 C 0.534 3.466 28 O -0.518 6.518 29 H 0.218 0.782 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.054 0.946 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.117 0.883 46 H 0.278 0.722 47 H 0.041 0.959 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 -10.269 -12.663 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.210 4.210 3 C 0.114 3.886 4 N -0.358 5.358 5 C -0.020 4.020 6 C -0.153 4.153 7 C -0.099 4.099 8 C -0.148 4.148 9 C -0.076 4.076 10 N -0.218 5.218 11 C -0.014 4.014 12 C -0.183 4.183 13 C -0.097 4.097 14 C -0.258 4.258 15 C -0.127 4.127 16 C -0.178 4.178 17 C 0.118 3.882 18 C -0.488 4.488 19 H 0.094 0.906 20 C -0.137 4.137 21 N -0.425 5.425 22 Si 0.718 3.282 23 H -0.185 1.185 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.075 4.075 27 C 0.322 3.678 28 O -0.392 6.392 29 H 0.234 0.766 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.135 0.865 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.367 -10.048 -12.610 16.705 hybrid contribution -0.426 1.278 -0.933 1.638 sum -4.793 -8.770 -13.542 16.831 Atomic orbital electron populations 1.24988 0.95986 1.01021 0.98326 1.23652 0.95096 1.00510 1.01778 1.18139 0.83513 1.04207 0.82731 1.48432 1.66253 1.08046 1.13077 1.22223 0.99779 0.86180 0.93808 1.22669 1.00089 0.94427 0.98069 1.21394 0.98680 0.97048 0.92767 1.22381 0.95347 0.98505 0.98602 1.23420 0.96585 0.94109 0.93528 1.65674 1.10357 1.37868 1.07904 1.20773 0.93511 0.95911 0.91249 1.19392 1.06663 0.98081 0.94178 1.20327 0.98782 0.96886 0.93691 1.20364 1.05393 1.02053 0.97985 1.20696 0.98161 0.96063 0.97822 1.21326 1.03570 1.00019 0.92855 1.17415 0.89107 0.89968 0.91700 1.19522 0.98664 1.18222 1.12401 0.90560 1.25744 0.95572 0.96992 0.95396 1.69808 1.01721 1.36240 1.34720 0.86472 0.79520 0.81804 0.80355 1.18477 1.19861 1.19855 1.22864 0.94209 1.00706 0.89727 1.20704 0.76009 0.84429 0.86695 1.90715 1.52689 1.19417 1.76402 0.76551 0.87814 0.88008 0.90296 0.91217 0.88190 0.89722 0.90604 0.91188 0.87896 0.92738 0.94355 0.92784 0.89602 0.89761 0.89712 0.86502 0.91144 0.94099 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 19.25 29.55 0.57 -1.29 16 2 C -0.21 -2.33 13.68 -37.12 -0.51 -2.84 16 3 C 0.24 2.31 6.41 -6.83 -0.04 2.27 16 4 N -0.62 -7.26 2.90 -175.84 -0.51 -7.77 16 5 C 0.10 0.90 7.37 -2.94 -0.02 0.88 16 6 C -0.11 -1.20 6.08 -25.52 -0.16 -1.36 16 7 C -0.09 -1.37 0.83 -155.22 -0.13 -1.50 16 8 C -0.11 -1.81 6.27 -25.74 -0.16 -1.97 16 9 C 0.05 1.02 4.62 -1.99 -0.01 1.01 16 10 N -0.49 -9.36 5.31 -231.59 -1.23 -10.59 16 11 C 0.11 2.30 4.82 -4.98 -0.02 2.27 16 12 C -0.18 -4.20 5.35 -103.91 -0.56 -4.76 16 13 C -0.08 -1.73 9.66 -39.66 -0.38 -2.12 16 14 C -0.24 -5.34 10.05 -39.28 -0.39 -5.73 16 15 C -0.11 -2.55 10.02 -39.66 -0.40 -2.95 16 16 C -0.16 -4.04 8.66 -38.87 -0.34 -4.37 16 17 C 0.12 3.05 5.23 -106.83 -0.56 2.49 16 18 C -0.46 -11.38 5.26 -37.74 -0.20 -11.58 16 19 H 0.08 1.90 5.34 -52.49 -0.28 1.62 16 20 C 0.08 1.92 5.19 -17.34 -0.09 1.83 16 21 N -0.80 -19.97 10.91 55.55 0.61 -19.37 16 22 Si 0.89 18.82 29.58 -169.99 -5.03 13.79 16 23 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 C 0.05 0.86 5.50 -2.58 -0.01 0.84 16 27 C 0.53 8.22 6.65 -11.20 -0.07 8.15 16 28 O -0.52 -10.02 17.18 5.56 0.10 -9.93 16 29 H 0.22 1.43 7.80 -54.09 -0.42 1.01 16 30 H 0.10 1.06 7.95 -51.93 -0.41 0.65 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 1.02 7.70 -51.93 -0.40 0.62 16 35 H 0.08 0.81 7.61 -51.93 -0.40 0.41 16 36 H 0.08 1.14 7.44 -51.93 -0.39 0.75 16 37 H 0.07 1.21 7.47 -51.93 -0.39 0.82 16 38 H 0.10 2.38 6.99 -51.93 -0.36 2.02 16 39 H 0.05 1.19 5.92 -51.93 -0.31 0.88 16 40 H 0.04 0.83 6.17 -51.93 -0.32 0.51 16 41 H 0.05 1.00 7.96 -51.93 -0.41 0.59 16 42 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 43 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.12 3.09 6.27 -52.49 -0.33 2.76 16 46 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 47 H 0.04 0.72 7.77 -51.92 -0.40 0.31 16 48 H 0.08 1.11 7.68 -51.93 -0.40 0.71 16 LS Contribution 385.08 15.07 5.80 5.80 Total: -1.00 -29.80 385.08 -10.64 -40.44 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.89 Total: 8.34 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -3.49 Total: -20.73 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -1.13 Total: -37.72 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.10 Total: -9.93 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.80 -10.64 -40.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274346759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.472 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds