Wall clock time and date at job start Tue Mar 31 2020 20:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47174 * 272.03360 * 3 2 1 5 5 C 1.46883 * 124.37261 * 90.00465 * 4 3 2 6 6 C 1.54698 * 105.51905 * 163.13907 * 5 4 3 7 7 C 1.53616 * 101.54624 * 24.50511 * 6 5 4 8 8 C 1.53248 * 111.06088 * 215.00138 * 7 6 5 9 9 C 1.54640 * 104.67532 * 238.99748 * 8 7 6 10 10 N 1.48649 * 104.63446 * 23.68977 * 9 8 7 11 11 C 1.46902 * 111.00068 * 201.48845 * 10 9 8 12 12 C 1.50697 * 109.47373 * 283.02854 * 11 10 9 13 13 C 1.37637 * 120.12421 * 264.37460 * 12 11 10 14 14 C 1.38620 * 120.24591 * 179.97438 * 13 12 11 15 15 C 1.38661 * 120.50145 * 0.02606 * 14 13 12 16 16 C 1.37605 * 120.24589 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.12850 * 84.09592 * 12 11 10 18 18 C 1.41397 * 120.24159 * 359.97438 * 17 12 11 19 19 H 1.08002 * 120.00266 * 28.40587 * 18 17 12 20 20 C 1.39948 * 120.00181 * 208.39444 * 18 17 12 21 21 N 1.30832 * 119.99666 * 12.14538 * 20 18 17 22 22 Si 1.86794 * 120.00225 * 192.13914 * 20 18 17 23 23 H 1.48499 * 109.47376 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47086 * 120.00598 * 22 20 18 25 25 H 1.48508 * 109.47036 * 240.00370 * 22 20 18 26 26 C 1.48801 * 104.38354 * 321.14615 * 10 9 8 27 27 C 1.34756 * 124.37333 * 269.96634 * 4 3 2 28 28 O 1.21283 * 125.13546 * 1.03651 * 27 4 3 29 29 H 4.40643 * 5.51416 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46536 * 152.03690 * 3 2 1 31 31 H 1.08991 * 109.47493 * 32.03818 * 3 2 1 32 32 H 1.08998 * 110.23468 * 44.12619 * 5 4 3 33 33 H 1.09000 * 110.23097 * 282.15502 * 5 4 3 34 34 H 1.09003 * 111.01755 * 142.58029 * 6 5 4 35 35 H 1.08998 * 111.01746 * 266.42662 * 6 5 4 36 36 H 1.08999 * 110.39792 * 357.79518 * 8 7 6 37 37 H 1.09001 * 110.39557 * 120.19724 * 8 7 6 38 38 H 1.09004 * 110.40880 * 142.48211 * 9 8 7 39 39 H 1.09006 * 110.40149 * 264.90212 * 9 8 7 40 40 H 1.08997 * 109.46583 * 43.03067 * 11 10 9 41 41 H 1.09000 * 109.46617 * 163.02814 * 11 10 9 42 42 H 1.07998 * 119.88150 * 0.02562 * 13 12 11 43 43 H 1.07992 * 119.75238 * 179.97438 * 14 13 12 44 44 H 1.07994 * 119.87500 * 179.97438 * 15 14 13 45 45 H 1.07996 * 120.12105 * 179.97438 * 16 15 14 46 46 H 0.96992 * 119.99775 * 179.97438 * 21 20 18 47 47 H 1.09010 * 110.45202 * 279.81749 * 26 10 9 48 48 H 1.08991 * 110.45994 * 157.25807 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0481 1.3804 5 6 3.4115 -1.2873 2.1186 6 6 4.2892 -0.8656 3.3206 7 6 3.8979 0.6109 3.4841 8 6 5.0979 1.4524 3.9315 9 6 4.6567 2.0815 5.2735 10 7 3.5988 1.1713 5.7851 11 6 2.7363 1.8592 6.7552 12 6 3.4519 1.9650 8.0772 13 6 3.2296 1.0273 9.0599 14 6 3.8868 1.1218 10.2767 15 6 4.7738 2.1598 10.5188 16 6 5.0105 3.1091 9.5511 17 6 4.3541 3.0192 8.3095 18 6 4.5952 3.9847 7.3050 19 1 3.8261 4.2165 6.5830 20 6 5.8303 4.6401 7.2463 21 7 6.8377 4.2020 7.9569 22 14 6.0407 6.1403 6.1534 23 1 4.7605 6.4303 5.4590 24 1 6.4279 7.3081 6.9848 25 1 7.1008 5.8753 5.1477 26 6 2.8306 0.7790 4.5726 27 6 3.3881 1.0381 2.1365 28 8 3.2298 2.1873 1.7826 29 1 -1.0500 -0.0002 0.0000 30 1 3.0088 0.9085 -0.4819 31 1 3.0098 -0.8702 -0.5451 32 1 3.9521 -1.9906 1.4853 33 1 2.4807 -1.7333 2.4694 34 1 4.0334 -1.4388 4.2118 35 1 5.3488 -0.9654 3.0851 36 1 5.9726 0.8189 4.0784 37 1 5.3104 2.2308 3.1986 38 1 5.4949 2.1192 5.9694 39 1 4.2522 3.0805 5.1100 40 1 2.5017 2.8583 6.3880 41 1 1.8135 1.2940 6.8856 42 1 2.5412 0.2144 8.8821 43 1 3.7061 0.3819 11.0423 44 1 5.2800 2.2239 11.4706 45 1 5.7014 3.9169 9.7419 46 1 7.6938 4.6560 7.9160 47 1 2.1261 1.5640 4.2975 48 1 2.3069 -0.1619 4.7413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274346759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:26 Heat of formation + Delta-G solvation = 41.306586 kcal Electronic energy + Delta-G solvation = -29706.200618 eV Core-core repulsion = 25919.649945 eV Total energy + Delta-G solvation = -3786.550672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.19180 -39.93957 -38.58829 -37.56779 -35.49523 -35.35432 -33.66304 -31.82045 -31.39787 -30.61326 -29.04213 -28.07025 -27.46706 -26.08235 -24.19854 -22.91189 -22.45574 -22.17636 -21.07005 -20.08433 -19.28691 -18.92137 -17.69719 -17.53536 -17.13063 -16.79554 -16.33868 -16.05788 -15.84805 -15.55541 -15.37040 -15.16037 -14.84199 -14.53703 -14.38975 -14.31737 -14.12745 -13.93583 -13.57564 -13.37127 -13.27535 -13.15905 -12.85405 -12.73156 -12.63011 -12.32289 -12.25671 -12.15961 -11.96273 -11.88772 -11.69694 -11.56135 -11.24795 -11.20103 -11.11081 -10.97080 -10.74047 -9.93179 -9.35663 -9.14062 -9.09621 -8.54194 -6.22460 1.00234 1.17045 1.30980 1.33832 1.43896 1.44785 1.48759 1.81953 2.18972 2.39725 2.82595 3.07143 3.43080 3.44838 3.46651 3.57205 3.90365 3.97328 4.01960 4.30393 4.31729 4.34715 4.40109 4.44979 4.49486 4.58725 4.63015 4.65991 4.74989 4.75260 4.81749 4.82510 4.91844 5.00501 5.03454 5.11332 5.17184 5.20739 5.29561 5.38397 5.42973 5.52022 5.57785 5.81988 5.94075 5.99190 6.07706 6.19779 6.22912 6.28211 6.49014 6.59533 6.78904 7.03635 7.04367 7.13516 8.41877 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.003639 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.320861 B = 7691.527785 C = 8937.082410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.244 4.244 3 C 0.230 3.770 4 N -0.613 5.613 5 C 0.103 3.897 6 C -0.107 4.107 7 C -0.094 4.094 8 C -0.104 4.104 9 C 0.061 3.939 10 N -0.492 5.492 11 C 0.118 3.882 12 C -0.187 4.187 13 C -0.082 4.082 14 C -0.236 4.236 15 C -0.116 4.116 16 C -0.187 4.187 17 C 0.093 3.907 18 C -0.470 4.470 19 H 0.064 0.936 20 C 0.050 3.950 21 N -0.826 5.826 22 Si 0.947 3.053 23 H -0.270 1.270 24 H -0.264 1.264 25 H -0.267 1.267 26 C 0.058 3.942 27 C 0.526 3.474 28 O -0.572 6.572 29 H 0.244 0.756 30 H 0.092 0.908 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.023 0.977 40 H 0.016 0.984 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.283 0.717 47 H 0.019 0.981 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.645 -13.650 -13.711 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.245 4.245 3 C 0.110 3.890 4 N -0.346 5.346 5 C -0.018 4.018 6 C -0.145 4.145 7 C -0.098 4.098 8 C -0.143 4.143 9 C -0.067 4.067 10 N -0.216 5.216 11 C -0.010 4.010 12 C -0.189 4.189 13 C -0.101 4.101 14 C -0.255 4.255 15 C -0.135 4.135 16 C -0.206 4.206 17 C 0.091 3.909 18 C -0.500 4.500 19 H 0.082 0.918 20 C -0.164 4.164 21 N -0.453 5.453 22 Si 0.770 3.230 23 H -0.194 1.194 24 H -0.189 1.189 25 H -0.192 1.192 26 C -0.071 4.071 27 C 0.314 3.686 28 O -0.451 6.451 29 H 0.260 0.740 30 H 0.110 0.890 31 H 0.161 0.839 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.034 0.966 41 H 0.097 0.903 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.115 0.885 46 H 0.093 0.907 47 H 0.037 0.963 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.264 -13.486 -13.663 19.906 hybrid contribution -0.244 2.240 -0.577 2.326 sum -5.508 -11.246 -14.240 18.962 Atomic orbital electron populations 1.25797 0.96984 1.00104 0.97084 1.24097 0.95972 1.01486 1.02932 1.18410 0.83194 1.05594 0.81848 1.48523 1.64511 1.07959 1.13572 1.22490 1.00585 0.85287 0.93443 1.22705 1.01411 0.90908 0.99461 1.21366 0.96887 0.99615 0.91936 1.22289 0.97155 0.98703 0.96119 1.23063 0.95664 0.93405 0.94561 1.65593 1.10325 1.36627 1.09023 1.20702 0.94302 0.95440 0.90534 1.19738 1.05880 0.97600 0.95694 1.20688 0.98956 0.97231 0.93220 1.20755 1.04137 1.01858 0.98738 1.20959 0.98502 0.95879 0.98149 1.21302 1.04556 1.00791 0.93968 1.17709 0.90268 0.91058 0.91859 1.19490 0.98855 1.19230 1.12457 0.91829 1.26262 0.95100 0.98765 0.96317 1.69854 1.02151 1.37305 1.35995 0.85672 0.78962 0.79331 0.79026 1.19440 1.18870 1.19207 1.22929 0.94146 1.01140 0.88844 1.20858 0.75943 0.84467 0.87360 1.90682 1.55188 1.21722 1.77470 0.73972 0.89023 0.83874 0.86438 0.89860 0.87138 0.88330 0.88821 0.92627 0.91575 0.95850 0.96621 0.90325 0.86521 0.86635 0.87786 0.88487 0.90661 0.96254 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 19.25 74.32 1.43 -1.85 16 2 C -0.24 -4.98 13.68 31.12 0.43 -4.55 16 3 C 0.23 4.01 6.41 84.57 0.54 4.55 16 4 N -0.61 -12.75 2.90 -828.65 -2.41 -15.16 16 5 C 0.10 1.35 7.37 86.89 0.64 1.99 16 6 C -0.11 -1.86 6.08 31.38 0.19 -1.66 16 7 C -0.09 -2.61 0.83 -52.64 -0.04 -2.65 16 8 C -0.10 -3.49 6.27 31.24 0.20 -3.29 16 9 C 0.06 2.56 4.62 86.52 0.40 2.96 16 10 N -0.49 -18.64 5.31 -886.63 -4.71 -23.34 16 11 C 0.12 4.84 4.82 85.56 0.41 5.26 16 12 C -0.19 -8.75 5.35 -19.41 -0.10 -8.85 16 13 C -0.08 -3.51 9.66 22.22 0.21 -3.29 16 14 C -0.24 -10.07 10.05 22.46 0.23 -9.84 16 15 C -0.12 -5.43 10.02 22.22 0.22 -5.21 16 16 C -0.19 -9.84 8.66 22.73 0.20 -9.64 16 17 C 0.09 4.92 5.23 -21.29 -0.11 4.80 16 18 C -0.47 -24.78 5.26 23.46 0.12 -24.65 16 19 H 0.06 3.42 5.34 -2.91 -0.02 3.40 16 20 C 0.05 2.52 5.19 85.26 0.44 2.96 16 21 N -0.83 -43.23 10.91 21.83 0.24 -43.00 16 22 Si 0.95 40.50 29.58 68.60 2.03 42.52 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 26 C 0.06 1.78 5.50 86.06 0.47 2.26 16 27 C 0.53 15.89 6.65 87.53 0.58 16.48 16 28 O -0.57 -22.91 17.18 -3.04 -0.05 -22.96 16 29 H 0.24 2.57 7.80 -4.42 -0.03 2.53 16 30 H 0.09 1.82 7.95 -2.39 -0.02 1.81 16 31 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 1.75 7.70 -2.39 -0.02 1.73 16 35 H 0.10 1.48 7.61 -2.39 -0.02 1.46 16 36 H 0.09 2.75 7.44 -2.39 -0.02 2.74 16 37 H 0.05 2.01 7.47 -2.39 -0.02 1.99 16 38 H 0.07 3.25 6.99 -2.38 -0.02 3.23 16 39 H 0.02 1.11 5.92 -2.38 -0.01 1.09 16 40 H 0.02 0.71 6.17 -2.39 -0.01 0.70 16 41 H 0.08 2.81 7.96 -2.39 -0.02 2.79 16 42 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 43 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 44 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 45 H 0.10 5.41 6.27 -2.91 -0.02 5.39 16 46 H 0.28 13.61 8.30 -92.71 -0.77 12.84 16 47 H 0.02 0.68 7.77 -2.38 -0.02 0.66 16 48 H 0.11 2.73 7.68 -2.39 -0.02 2.71 16 Total: -1.00 -69.65 385.08 2.52 -67.13 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.96 Total: 29.04 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 6.46 Total: -34.23 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -6.88 Total: -81.50 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -69.65 2.52 -67.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274346759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.435 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds