Wall clock time and date at job start Tue Mar 31 2020 20:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47221 * 196.74600 * 3 2 1 5 5 C 1.33324 * 117.36387 * 270.02294 * 4 3 2 6 6 O 1.21284 * 118.67770 * 0.26981 * 5 4 3 7 7 C 1.50311 * 122.64536 * 180.24875 * 5 4 3 8 8 C 1.55014 * 109.28640 * 338.74220 * 7 5 4 9 9 C 1.53104 * 108.11100 * 52.78316 * 8 7 5 10 10 H 1.09001 * 112.34087 * 59.19860 * 9 8 7 11 11 C 1.44818 * 117.36354 * 89.99930 * 4 3 2 12 12 H 1.08997 * 110.00778 * 45.52674 * 11 4 3 13 13 C 1.54357 * 111.45739 * 283.17992 * 11 4 3 14 14 C 1.54253 * 104.82653 * 216.99880 * 13 11 4 15 15 N 1.48056 * 106.83506 * 358.54590 * 14 13 11 16 16 C 1.46904 * 110.99740 * 146.60963 * 15 14 13 17 17 C 1.50704 * 109.46827 * 52.98376 * 16 15 14 18 18 C 1.37642 * 120.12493 * 260.28988 * 17 16 15 19 19 C 1.38612 * 120.24862 * 180.25312 * 18 17 16 20 20 C 1.38654 * 120.49718 * 359.45155 * 19 18 17 21 21 C 1.37593 * 120.25451 * 0.27407 * 20 19 18 22 22 C 1.40697 * 120.13222 * 79.99993 * 17 16 15 23 23 C 1.41401 * 120.24120 * 359.97438 * 22 17 16 24 24 H 1.07996 * 119.99946 * 334.16211 * 23 22 17 25 25 C 1.39938 * 119.99848 * 154.16949 * 23 22 17 26 26 N 1.30836 * 119.99976 * 343.55599 * 25 23 22 27 27 Si 1.86799 * 120.00257 * 163.56137 * 25 23 22 28 28 H 1.48496 * 109.47140 * 94.96044 * 27 25 23 29 29 H 1.48494 * 109.47330 * 214.96188 * 27 25 23 30 30 H 1.48506 * 109.46983 * 334.96053 * 27 25 23 31 31 H 4.40642 * 5.51358 * 180.02562 * 4 1 2 32 32 H 1.08998 * 109.47447 * 76.74269 * 3 2 1 33 33 H 1.09009 * 109.47490 * 316.74517 * 3 2 1 34 34 H 1.08999 * 109.47779 * 99.19236 * 7 5 4 35 35 H 1.08998 * 109.47759 * 219.20525 * 7 5 4 36 36 H 1.08997 * 110.74509 * 292.79541 * 8 7 5 37 37 H 1.09000 * 109.36190 * 171.95670 * 8 7 5 38 38 H 1.09005 * 110.37082 * 335.83624 * 13 11 4 39 39 H 1.09005 * 110.37027 * 98.05015 * 13 11 4 40 40 H 1.09007 * 109.98471 * 239.20251 * 14 13 11 41 41 H 1.08998 * 109.98836 * 117.89479 * 14 13 11 42 42 H 1.08995 * 109.47145 * 292.97943 * 16 15 14 43 43 H 1.08996 * 109.46596 * 172.97786 * 16 15 14 44 44 H 1.08005 * 119.87742 * 359.97438 * 18 17 16 45 45 H 1.07994 * 119.74731 * 179.72283 * 19 18 17 46 46 H 1.08008 * 119.87349 * 180.24876 * 20 19 18 47 47 H 1.07997 * 120.13503 * 179.97438 * 21 20 19 48 48 H 0.97001 * 119.99583 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3235 0.3980 5 6 3.3372 2.2182 -0.5694 6 8 3.1064 1.8980 -1.7162 7 6 3.8406 3.6078 -0.2958 8 6 3.5581 3.9726 1.1841 9 6 4.1338 2.8618 2.0664 10 1 5.2069 2.7336 1.9238 11 6 3.3555 1.5540 1.8104 12 1 3.8896 0.7099 2.2466 13 6 2.0262 1.7837 2.5606 14 6 2.3507 2.8581 3.6188 15 7 3.7906 3.1740 3.4815 16 6 4.0509 4.5872 3.7868 17 6 3.4693 4.9251 5.1354 18 6 2.2544 5.5661 5.2228 19 6 1.7194 5.8828 6.4617 20 6 2.3944 5.5486 7.6258 21 6 3.6076 4.9026 7.5626 22 6 4.1631 4.5812 6.3101 23 6 5.4087 3.9166 6.2327 24 1 5.6448 3.3105 5.3706 25 6 6.3355 4.0440 7.2734 26 7 6.2065 5.0065 8.1502 27 14 7.7571 2.8400 7.4109 28 1 8.9560 3.4117 6.7470 29 1 8.0569 2.5894 8.8435 30 1 7.3884 1.5615 6.7514 31 1 -1.0502 -0.0005 0.0001 32 1 3.0095 -0.2348 -1.0002 33 1 3.0097 -0.7477 0.7042 34 1 4.9121 3.6512 -0.4911 35 1 3.3241 4.3156 -0.9441 36 1 2.4863 4.0606 1.3622 37 1 4.0465 4.9174 1.4229 38 1 1.2609 2.1462 1.8742 39 1 1.6977 0.8622 3.0414 40 1 2.1478 2.4707 4.6173 41 1 1.7541 3.7520 3.4373 42 1 3.5893 5.2146 3.0244 43 1 5.1264 4.7638 3.8004 44 1 1.7179 5.8274 4.3225 45 1 0.7677 6.3898 6.5207 46 1 1.9664 5.7966 8.5859 47 1 4.1319 4.6435 8.4705 48 1 6.8492 5.0950 8.8713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274350212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:07 Heat of formation + Delta-G solvation = 60.031554 kcal Electronic energy + Delta-G solvation = -29906.523773 eV Core-core repulsion = 26120.785077 eV Total energy + Delta-G solvation = -3785.738697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.17886 -38.92876 -37.44298 -35.80464 -33.73110 -33.58156 -32.59522 -31.71656 -29.56873 -29.20705 -27.92694 -27.12951 -25.52179 -24.39130 -23.99942 -21.74928 -20.94816 -20.76024 -19.15111 -18.94216 -17.95598 -17.13408 -16.82992 -16.59912 -16.07152 -15.40407 -15.22747 -14.74052 -14.57041 -14.33750 -14.19031 -13.80943 -13.65268 -13.41244 -13.20936 -12.90113 -12.55347 -12.48430 -12.38537 -11.95080 -11.67141 -11.61443 -11.51543 -11.38589 -11.15180 -11.02515 -10.92507 -10.80279 -10.69234 -10.58310 -10.53758 -10.35953 -10.27680 -9.66111 -9.48107 -9.30223 -9.14573 -9.00138 -7.87986 -7.38457 -7.32268 -6.74141 -4.32246 2.26130 2.53975 2.72824 2.76974 2.93143 3.08773 3.13722 3.24485 3.26154 3.95228 4.21922 4.28330 4.42392 4.54331 4.64997 4.67915 4.87236 5.05121 5.11484 5.19246 5.22891 5.38066 5.43616 5.50901 5.63839 5.70959 5.71426 5.76629 5.80998 5.89879 5.97948 6.08674 6.10285 6.20223 6.25421 6.34632 6.41151 6.46522 6.55794 6.83515 7.10903 7.23478 7.27094 7.35554 7.38018 7.47817 7.52065 7.64763 7.90752 8.01404 8.07515 8.13698 8.31255 8.68081 8.94093 9.00628 10.20358 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.003533 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.932417 B = 7923.216983 C = 8754.982284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.196 4.196 3 C 0.212 3.788 4 N -0.589 5.589 5 C 0.523 3.477 6 O -0.554 6.554 7 C -0.131 4.131 8 C -0.153 4.153 9 C 0.056 3.944 10 H 0.105 0.895 11 C 0.142 3.858 12 H 0.098 0.902 13 C -0.140 4.140 14 C 0.048 3.952 15 N -0.490 5.490 16 C 0.112 3.888 17 C -0.202 4.202 18 C -0.084 4.084 19 C -0.247 4.247 20 C -0.105 4.105 21 C -0.164 4.164 22 C 0.131 3.869 23 C -0.446 4.446 24 H 0.092 0.908 25 C 0.074 3.926 26 N -0.796 5.796 27 Si 0.903 3.097 28 H -0.272 1.272 29 H -0.278 1.278 30 H -0.259 1.259 31 H 0.216 0.784 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.028 0.972 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -6.454 -10.838 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.198 4.198 3 C 0.090 3.910 4 N -0.319 5.319 5 C 0.312 3.688 6 O -0.433 6.433 7 C -0.171 4.171 8 C -0.192 4.192 9 C -0.053 4.053 10 H 0.123 0.877 11 C 0.038 3.962 12 H 0.116 0.884 13 C -0.179 4.179 14 C -0.080 4.080 15 N -0.213 5.213 16 C -0.014 4.014 17 C -0.204 4.204 18 C -0.103 4.103 19 C -0.266 4.266 20 C -0.124 4.124 21 C -0.183 4.183 22 C 0.128 3.872 23 C -0.475 4.475 24 H 0.110 0.890 25 C -0.144 4.144 26 N -0.422 5.422 27 Si 0.728 3.272 28 H -0.198 1.198 29 H -0.203 1.203 30 H -0.183 1.183 31 H 0.233 0.767 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.134 0.866 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.559 -6.775 -10.831 13.262 hybrid contribution -0.201 0.172 -0.111 0.287 sum -3.760 -6.603 -10.942 13.322 Atomic orbital electron populations 1.24907 0.95908 0.98924 1.01379 1.23452 0.94841 1.01348 1.00110 1.18372 0.84001 0.85326 1.03277 1.47087 1.64781 1.12939 1.07131 1.20303 0.76804 0.87270 0.84434 1.90707 1.52337 1.79368 1.20865 1.21960 1.03517 0.93059 0.98586 1.22680 1.02389 1.00920 0.93213 1.23105 0.99952 0.92336 0.89921 0.87714 1.21638 0.96553 0.99315 0.78685 0.88373 1.22878 0.96835 1.00275 0.97925 1.22776 0.89470 0.96629 0.99127 1.65233 1.16598 1.22530 1.16973 1.20926 1.00935 0.85584 0.93991 1.19412 0.98104 1.09476 0.93372 1.20344 0.95139 0.99310 0.95460 1.20276 1.01180 1.12174 0.92990 1.20676 0.96007 0.99727 0.95985 1.21356 0.94760 1.03682 0.98538 1.17373 0.91758 0.88144 0.89918 1.19756 0.98549 1.25475 1.03755 0.88989 1.25972 0.99320 0.94491 0.94583 1.69844 1.34161 1.25931 1.12252 0.86374 0.80755 0.81834 0.78220 1.19773 1.20347 1.18266 0.76738 0.87349 0.88057 0.87934 0.88398 0.90862 0.89387 0.91489 0.90867 0.89917 0.93554 0.95389 0.90204 0.90164 0.89926 0.89783 0.86631 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 19.25 29.55 0.57 -1.50 16 2 C -0.20 -2.32 12.82 -37.13 -0.48 -2.79 16 3 C 0.21 2.27 5.62 -6.83 -0.04 2.23 16 4 N -0.59 -6.88 2.47 -169.61 -0.42 -7.30 16 5 C 0.52 6.86 7.45 -11.82 -0.09 6.77 16 6 O -0.55 -9.00 16.20 5.55 0.09 -8.91 16 7 C -0.13 -1.41 6.13 -27.01 -0.17 -1.58 16 8 C -0.15 -1.78 4.18 -25.61 -0.11 -1.89 16 9 C 0.06 0.71 3.42 -65.84 -0.23 0.48 16 10 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 11 C 0.14 1.66 3.14 -67.42 -0.21 1.45 16 12 H 0.10 1.08 8.00 -51.93 -0.42 0.67 16 13 C -0.14 -1.75 5.35 -25.36 -0.14 -1.88 16 14 C 0.05 0.73 4.82 -2.53 -0.01 0.72 16 15 N -0.49 -7.82 5.12 -223.76 -1.14 -8.97 16 16 C 0.11 2.01 3.83 -4.97 -0.02 1.99 16 17 C -0.20 -4.37 4.54 -103.91 -0.47 -4.84 16 18 C -0.08 -1.75 8.54 -39.66 -0.34 -2.09 16 19 C -0.25 -5.35 10.05 -39.29 -0.39 -5.74 16 20 C -0.11 -2.41 10.02 -39.66 -0.40 -2.81 16 21 C -0.16 -4.10 8.69 -38.88 -0.34 -4.44 16 22 C 0.13 3.22 5.56 -106.82 -0.59 2.63 16 23 C -0.45 -10.91 8.18 -37.74 -0.31 -11.22 16 24 H 0.09 2.18 6.85 -52.49 -0.36 1.82 16 25 C 0.07 1.76 5.16 -17.34 -0.09 1.67 16 26 N -0.80 -19.87 10.97 55.55 0.61 -19.26 16 27 Si 0.90 18.07 29.59 -169.99 -5.03 13.04 16 28 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 29 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 30 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 31 H 0.22 1.60 7.80 -54.08 -0.42 1.17 16 32 H 0.11 1.20 7.14 -51.93 -0.37 0.82 16 33 H 0.10 0.83 7.90 -51.92 -0.41 0.42 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.93 6.57 -51.93 -0.34 0.59 16 37 H 0.09 1.02 6.32 -51.93 -0.33 0.69 16 38 H 0.07 0.87 7.83 -51.93 -0.41 0.46 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.05 0.73 6.29 -51.93 -0.33 0.41 16 42 H 0.03 0.46 5.43 -51.93 -0.28 0.18 16 43 H 0.08 1.54 7.34 -51.93 -0.38 1.15 16 44 H 0.08 1.50 7.78 -52.48 -0.41 1.09 16 45 H 0.08 1.61 8.06 -52.49 -0.42 1.19 16 46 H 0.08 1.75 8.06 -52.48 -0.42 1.33 16 47 H 0.12 3.02 6.21 -52.49 -0.33 2.69 16 48 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -28.34 379.00 -10.90 -39.24 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.87 Total: 9.30 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -3.84 Total: -22.85 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.96 Total: -35.53 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.34 -10.90 -39.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274350212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.272 kcal (2) G-P(sol) polarization free energy of solvation -28.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds