Wall clock time and date at job start Tue Mar 31 2020 20:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47221 * 196.74600 * 3 2 1 5 5 C 1.33324 * 117.36387 * 270.02294 * 4 3 2 6 6 O 1.21284 * 118.67770 * 0.26981 * 5 4 3 7 7 C 1.50311 * 122.64536 * 180.24875 * 5 4 3 8 8 C 1.55014 * 109.28640 * 338.74220 * 7 5 4 9 9 C 1.53104 * 108.11100 * 52.78316 * 8 7 5 10 10 H 1.09001 * 112.34087 * 59.19860 * 9 8 7 11 11 C 1.44818 * 117.36354 * 89.99930 * 4 3 2 12 12 H 1.08997 * 110.00778 * 45.52674 * 11 4 3 13 13 C 1.54357 * 111.45739 * 283.17992 * 11 4 3 14 14 C 1.54253 * 104.82653 * 216.99880 * 13 11 4 15 15 N 1.48056 * 106.83506 * 358.54590 * 14 13 11 16 16 C 1.46904 * 110.99740 * 146.60963 * 15 14 13 17 17 C 1.50704 * 109.46827 * 52.98376 * 16 15 14 18 18 C 1.37642 * 120.12493 * 260.28988 * 17 16 15 19 19 C 1.38612 * 120.24862 * 180.25312 * 18 17 16 20 20 C 1.38654 * 120.49718 * 359.45155 * 19 18 17 21 21 C 1.37593 * 120.25451 * 0.27407 * 20 19 18 22 22 C 1.40697 * 120.13222 * 79.99993 * 17 16 15 23 23 C 1.41401 * 120.24120 * 359.97438 * 22 17 16 24 24 H 1.07996 * 119.99946 * 334.16211 * 23 22 17 25 25 C 1.39938 * 119.99848 * 154.16949 * 23 22 17 26 26 N 1.30836 * 119.99976 * 343.55599 * 25 23 22 27 27 Si 1.86799 * 120.00257 * 163.56137 * 25 23 22 28 28 H 1.48496 * 109.47140 * 94.96044 * 27 25 23 29 29 H 1.48494 * 109.47330 * 214.96188 * 27 25 23 30 30 H 1.48506 * 109.46983 * 334.96053 * 27 25 23 31 31 H 4.40642 * 5.51358 * 180.02562 * 4 1 2 32 32 H 1.08998 * 109.47447 * 76.74269 * 3 2 1 33 33 H 1.09009 * 109.47490 * 316.74517 * 3 2 1 34 34 H 1.08999 * 109.47779 * 99.19236 * 7 5 4 35 35 H 1.08998 * 109.47759 * 219.20525 * 7 5 4 36 36 H 1.08997 * 110.74509 * 292.79541 * 8 7 5 37 37 H 1.09000 * 109.36190 * 171.95670 * 8 7 5 38 38 H 1.09005 * 110.37082 * 335.83624 * 13 11 4 39 39 H 1.09005 * 110.37027 * 98.05015 * 13 11 4 40 40 H 1.09007 * 109.98471 * 239.20251 * 14 13 11 41 41 H 1.08998 * 109.98836 * 117.89479 * 14 13 11 42 42 H 1.08995 * 109.47145 * 292.97943 * 16 15 14 43 43 H 1.08996 * 109.46596 * 172.97786 * 16 15 14 44 44 H 1.08005 * 119.87742 * 359.97438 * 18 17 16 45 45 H 1.07994 * 119.74731 * 179.72283 * 19 18 17 46 46 H 1.08008 * 119.87349 * 180.24876 * 20 19 18 47 47 H 1.07997 * 120.13503 * 179.97438 * 21 20 19 48 48 H 0.97001 * 119.99583 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3235 0.3980 5 6 3.3372 2.2182 -0.5694 6 8 3.1064 1.8980 -1.7162 7 6 3.8406 3.6078 -0.2958 8 6 3.5581 3.9726 1.1841 9 6 4.1338 2.8618 2.0664 10 1 5.2069 2.7336 1.9238 11 6 3.3555 1.5540 1.8104 12 1 3.8896 0.7099 2.2466 13 6 2.0262 1.7837 2.5606 14 6 2.3507 2.8581 3.6188 15 7 3.7906 3.1740 3.4815 16 6 4.0509 4.5872 3.7868 17 6 3.4693 4.9251 5.1354 18 6 2.2544 5.5661 5.2228 19 6 1.7194 5.8828 6.4617 20 6 2.3944 5.5486 7.6258 21 6 3.6076 4.9026 7.5626 22 6 4.1631 4.5812 6.3101 23 6 5.4087 3.9166 6.2327 24 1 5.6448 3.3105 5.3706 25 6 6.3355 4.0440 7.2734 26 7 6.2065 5.0065 8.1502 27 14 7.7571 2.8400 7.4109 28 1 8.9560 3.4117 6.7470 29 1 8.0569 2.5894 8.8435 30 1 7.3884 1.5615 6.7514 31 1 -1.0502 -0.0005 0.0001 32 1 3.0095 -0.2348 -1.0002 33 1 3.0097 -0.7477 0.7042 34 1 4.9121 3.6512 -0.4911 35 1 3.3241 4.3156 -0.9441 36 1 2.4863 4.0606 1.3622 37 1 4.0465 4.9174 1.4229 38 1 1.2609 2.1462 1.8742 39 1 1.6977 0.8622 3.0414 40 1 2.1478 2.4707 4.6173 41 1 1.7541 3.7520 3.4373 42 1 3.5893 5.2146 3.0244 43 1 5.1264 4.7638 3.8004 44 1 1.7179 5.8274 4.3225 45 1 0.7677 6.3898 6.5207 46 1 1.9664 5.7966 8.5859 47 1 4.1319 4.6435 8.4705 48 1 6.8492 5.0950 8.8713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274350212.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:06 Heat of formation + Delta-G solvation = 45.720404 kcal Electronic energy + Delta-G solvation = -29907.144352 eV Core-core repulsion = 26120.785077 eV Total energy + Delta-G solvation = -3786.359275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.20794 -40.18918 -39.00583 -36.83836 -35.41332 -34.72694 -33.57454 -32.97334 -31.31158 -30.61945 -29.02156 -28.04982 -27.21075 -25.89111 -24.96835 -22.87986 -22.61777 -22.16612 -20.63659 -19.82888 -18.91663 -18.88203 -17.82843 -17.56531 -17.25219 -16.91593 -16.43955 -16.19334 -15.74466 -15.65225 -15.43601 -15.23787 -14.80518 -14.49634 -14.33552 -14.12011 -14.07988 -13.75312 -13.54421 -13.32830 -13.17320 -12.92740 -12.73320 -12.68386 -12.59827 -12.49521 -12.26901 -12.22058 -11.97597 -11.91666 -11.71593 -11.53458 -11.22922 -11.10861 -11.01476 -10.92181 -10.64270 -9.98667 -9.22582 -9.16472 -9.00371 -8.51486 -6.16959 1.04883 1.17505 1.36818 1.44929 1.55312 1.57508 1.61547 1.89477 2.28336 2.34681 2.85463 3.16139 3.38588 3.49859 3.56175 3.67131 3.85736 3.94423 4.07755 4.15249 4.26587 4.35021 4.40082 4.42395 4.44617 4.47795 4.58075 4.62187 4.73485 4.77853 4.82127 4.86990 4.90412 4.96590 5.05788 5.08452 5.14291 5.22144 5.27939 5.33376 5.39304 5.45273 5.60779 5.85966 5.98583 6.16327 6.21691 6.29151 6.35519 6.37869 6.52691 6.65883 6.86044 7.03126 7.12511 7.20300 8.44927 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.003533 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.932417 B = 7923.216983 C = 8754.982284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.229 4.229 3 C 0.209 3.791 4 N -0.582 5.582 5 C 0.518 3.482 6 O -0.589 6.589 7 C -0.123 4.123 8 C -0.145 4.145 9 C 0.057 3.943 10 H 0.114 0.886 11 C 0.150 3.850 12 H 0.111 0.889 13 C -0.126 4.126 14 C 0.054 3.946 15 N -0.505 5.505 16 C 0.121 3.879 17 C -0.198 4.198 18 C -0.087 4.087 19 C -0.248 4.248 20 C -0.115 4.115 21 C -0.196 4.196 22 C 0.103 3.897 23 C -0.467 4.467 24 H 0.093 0.907 25 C 0.033 3.967 26 N -0.833 5.833 27 Si 0.970 3.030 28 H -0.266 1.266 29 H -0.277 1.277 30 H -0.256 1.256 31 H 0.241 0.759 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 -7.057 -12.415 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.230 4.230 3 C 0.087 3.913 4 N -0.312 5.312 5 C 0.309 3.691 6 O -0.471 6.471 7 C -0.163 4.163 8 C -0.184 4.184 9 C -0.051 4.051 10 H 0.132 0.868 11 C 0.046 3.954 12 H 0.128 0.872 13 C -0.165 4.165 14 C -0.074 4.074 15 N -0.228 5.228 16 C -0.005 4.005 17 C -0.200 4.200 18 C -0.106 4.106 19 C -0.267 4.267 20 C -0.134 4.134 21 C -0.215 4.215 22 C 0.100 3.900 23 C -0.497 4.497 24 H 0.111 0.889 25 C -0.181 4.181 26 N -0.460 5.460 27 Si 0.793 3.207 28 H -0.191 1.191 29 H -0.202 1.202 30 H -0.180 1.180 31 H 0.258 0.742 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.116 0.884 47 H 0.111 0.889 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.865 -7.383 -12.401 14.941 hybrid contribution -0.260 0.395 0.349 0.587 sum -4.125 -6.988 -12.052 14.529 Atomic orbital electron populations 1.25683 0.96848 0.97798 1.00369 1.23854 0.95625 1.02430 1.01127 1.18529 0.83803 0.85268 1.03711 1.47064 1.64090 1.13239 1.06797 1.20697 0.76314 0.88055 0.84063 1.90696 1.54048 1.80104 1.22225 1.21953 1.04707 0.91785 0.97864 1.22568 1.01711 1.00544 0.93547 1.23178 1.00724 0.93178 0.88052 0.86807 1.21571 0.95933 0.99303 0.78629 0.87164 1.22739 0.97171 0.99592 0.97042 1.22638 0.89052 0.97141 0.98592 1.65071 1.17101 1.21030 1.19583 1.20761 0.99890 0.87310 0.92563 1.19816 0.97938 1.07906 0.94305 1.20665 0.94983 0.98564 0.96387 1.20631 1.01910 1.11419 0.92751 1.20900 0.95563 0.99475 0.97449 1.21327 0.96002 1.05972 0.98230 1.17709 0.92532 0.88982 0.90755 1.19915 0.99038 1.26262 1.04445 0.88855 1.26724 1.01649 0.95641 0.94040 1.69920 1.35439 1.27508 1.13090 0.85359 0.77747 0.79561 0.78079 1.19056 1.20213 1.17964 0.74208 0.87988 0.85576 0.86074 0.87638 0.91696 0.89061 0.91644 0.90080 0.92564 0.94071 0.93383 0.91631 0.87379 0.87415 0.88360 0.88854 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.68 19.25 74.32 1.43 -2.25 16 2 C -0.23 -5.02 12.82 31.12 0.40 -4.63 16 3 C 0.21 4.09 5.62 84.57 0.48 4.56 16 4 N -0.58 -12.40 2.47 -809.73 -2.00 -14.41 16 5 C 0.52 12.62 7.45 87.76 0.65 13.27 16 6 O -0.59 -18.44 16.20 -3.04 -0.05 -18.49 16 7 C -0.12 -2.35 6.13 30.42 0.19 -2.16 16 8 C -0.14 -3.01 4.18 31.32 0.13 -2.88 16 9 C 0.06 1.32 3.42 45.01 0.15 1.47 16 10 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 11 C 0.15 3.15 3.14 46.22 0.14 3.30 16 12 H 0.11 2.13 8.00 -2.39 -0.02 2.11 16 13 C -0.13 -2.91 5.35 31.48 0.17 -2.74 16 14 C 0.05 1.59 4.82 86.51 0.42 2.00 16 15 N -0.50 -15.45 5.12 -861.84 -4.41 -19.86 16 16 C 0.12 4.23 3.83 85.56 0.33 4.56 16 17 C -0.20 -8.50 4.54 -19.40 -0.09 -8.59 16 18 C -0.09 -3.53 8.54 22.22 0.19 -3.34 16 19 C -0.25 -10.43 10.05 22.46 0.23 -10.20 16 20 C -0.12 -5.33 10.02 22.22 0.22 -5.11 16 21 C -0.20 -10.12 8.69 22.73 0.20 -9.92 16 22 C 0.10 5.17 5.56 -21.29 -0.12 5.05 16 23 C -0.47 -23.30 8.18 23.46 0.19 -23.11 16 24 H 0.09 4.47 6.85 -2.91 -0.02 4.45 16 25 C 0.03 1.61 5.16 85.25 0.44 2.05 16 26 N -0.83 -42.93 10.97 21.83 0.24 -42.69 16 27 Si 0.97 37.41 29.59 68.60 2.03 39.44 16 28 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 29 H -0.28 -10.50 7.11 99.48 0.71 -9.80 16 30 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 31 H 0.24 2.94 7.80 -4.41 -0.03 2.91 16 32 H 0.10 2.14 7.14 -2.39 -0.02 2.13 16 33 H 0.13 1.76 7.90 -2.38 -0.02 1.75 16 34 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.48 6.57 -2.39 -0.02 1.46 16 37 H 0.09 1.87 6.32 -2.39 -0.02 1.85 16 38 H 0.06 1.56 7.83 -2.38 -0.02 1.54 16 39 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.04 1.24 6.29 -2.39 -0.02 1.22 16 42 H 0.05 1.47 5.43 -2.39 -0.01 1.46 16 43 H 0.07 2.48 7.34 -2.39 -0.02 2.47 16 44 H 0.11 3.74 7.78 -2.91 -0.02 3.72 16 45 H 0.11 3.94 8.06 -2.91 -0.02 3.92 16 46 H 0.10 4.11 8.06 -2.91 -0.02 4.09 16 47 H 0.09 5.15 6.21 -2.91 -0.02 5.13 16 48 H 0.28 13.35 8.30 -92.71 -0.77 12.59 16 Total: -1.00 -62.39 379.00 2.52 -59.87 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.96 Total: 34.78 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 5.75 Total: -38.64 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -6.17 Total: -76.95 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.05 Total: -18.49 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Total: -62.39 2.52 -59.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274350212.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.588 kcal (2) G-P(sol) polarization free energy of solvation -62.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds