Wall clock time and date at job start Tue Mar 31 2020 20:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 H 1.09000 * 109.47024 * 54.99891 * 3 2 1 5 5 O 1.42903 * 109.47132 * 294.99976 * 3 2 1 6 6 C 1.35949 * 116.99772 * 99.24534 * 5 3 2 7 7 C 1.38660 * 120.06802 * 354.92625 * 6 5 3 8 8 C 1.38179 * 119.97453 * 180.27655 * 7 6 5 9 9 C 1.38258 * 120.09205 * 359.97438 * 8 7 6 10 10 C 1.38252 * 120.12879 * 359.97438 * 9 8 7 11 11 C 1.38330 * 120.02979 * 0.02562 * 10 9 8 12 12 F 1.35104 * 120.04750 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46987 * 174.99918 * 3 2 1 14 14 O 1.21288 * 119.99532 * 120.00073 * 13 3 2 15 15 N 1.34769 * 120.00331 * 300.00142 * 13 3 2 16 16 C 1.46498 * 120.00343 * 180.02562 * 15 13 3 17 17 H 1.09006 * 109.46982 * 325.00196 * 16 15 13 18 18 C 1.53005 * 109.47400 * 84.99668 * 16 15 13 19 19 C 1.53000 * 109.47554 * 204.99853 * 16 15 13 20 20 N 1.46503 * 109.46994 * 54.99661 * 19 16 15 21 21 C 1.46500 * 119.99931 * 270.00554 * 20 19 16 22 22 C 1.36932 * 119.99995 * 90.00036 * 20 19 16 23 23 H 1.08001 * 119.99945 * 25.97826 * 22 20 19 24 24 C 1.38814 * 120.00215 * 205.97678 * 22 20 19 25 25 N 1.31619 * 119.99726 * 9.81727 * 24 22 20 26 26 Si 1.86798 * 120.00077 * 189.81662 * 24 22 20 27 27 H 1.48506 * 109.47283 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47118 * 120.00014 * 26 24 22 29 29 H 1.48497 * 109.47188 * 240.00126 * 26 24 22 30 30 H 1.08995 * 109.47373 * 60.00242 * 1 2 3 31 31 H 1.09001 * 109.47056 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47378 * 299.99925 * 1 2 3 33 33 H 1.08999 * 109.47378 * 240.00074 * 2 1 3 34 34 H 1.08995 * 109.47373 * 119.99758 * 2 1 3 35 35 H 1.08006 * 120.00852 * 0.29368 * 7 6 5 36 36 H 1.08001 * 119.95252 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.93370 * 180.02562 * 9 8 7 38 38 H 1.08006 * 119.98510 * 179.97438 * 10 9 8 39 39 H 0.97005 * 120.00167 * 359.97438 * 15 13 3 40 40 H 1.08995 * 109.47288 * 180.02562 * 18 16 15 41 41 H 1.09004 * 109.46852 * 300.00295 * 18 16 15 42 42 H 1.09000 * 109.46647 * 59.99872 * 18 16 15 43 43 H 1.08994 * 109.47559 * 175.00048 * 19 16 15 44 44 H 1.08999 * 109.46855 * 294.99989 * 19 16 15 45 45 H 1.09003 * 109.47601 * 87.41236 * 21 20 19 46 46 H 1.09001 * 109.46641 * 207.41075 * 21 20 19 47 47 H 1.08997 * 109.47003 * 327.40946 * 21 20 19 48 48 H 0.96998 * 119.99628 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.5640 2.8824 -1.1843 7 6 -0.1953 2.9677 -0.0273 8 6 -1.3141 3.7779 0.0061 9 6 -1.6774 4.5045 -1.1126 10 6 -0.9227 4.4233 -2.2681 11 6 0.1983 3.6138 -2.3073 12 9 0.9365 3.5346 -3.4361 13 6 3.5419 1.4443 0.1239 14 8 4.2216 1.9436 -0.7478 15 7 4.1297 0.8912 1.2031 16 6 5.5897 0.8934 1.3237 17 1 6.0361 0.7750 0.3363 18 6 6.0490 2.2186 1.9353 19 6 6.0289 -0.2630 2.2241 20 7 5.4878 -1.5206 1.7025 21 6 4.1754 -1.9943 2.1490 22 6 6.2087 -2.2532 0.7977 23 1 7.2854 -2.1725 0.7730 24 6 5.5556 -3.0995 -0.0878 25 7 4.2443 -3.0572 -0.1928 26 14 6.5379 -4.2985 -1.1304 27 1 7.9839 -4.1490 -0.8270 28 1 6.1085 -5.6870 -0.8251 29 1 6.3022 -4.0124 -2.5684 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.0878 2.4011 0.8476 36 1 -1.9055 3.8438 0.9074 37 1 -2.5522 5.1374 -1.0836 38 1 -1.2089 4.9916 -3.1409 39 1 3.5861 0.4922 1.9004 40 1 7.1353 2.2204 2.0246 41 1 5.7361 3.0425 1.2938 42 1 5.6026 2.3371 2.9226 43 1 7.1174 -0.3159 2.2427 44 1 5.6558 -0.0984 3.2349 45 1 3.3990 -1.5631 1.5170 46 1 4.1385 -3.0815 2.0790 47 1 4.0121 -1.6910 3.1831 48 1 3.7880 -3.6483 -0.8118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275697028.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:16 Heat of formation + Delta-G solvation = -86.442263 kcal Electronic energy + Delta-G solvation = -30913.573766 eV Core-core repulsion = 26690.714263 eV Total energy + Delta-G solvation = -4222.859503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.84303 -41.81412 -40.41305 -38.57450 -37.87550 -35.79054 -34.91996 -33.03769 -31.87583 -31.59477 -30.93873 -28.37606 -27.92115 -27.38428 -24.43548 -23.90673 -23.46860 -22.81869 -21.79501 -21.22355 -19.78919 -18.81707 -18.53216 -17.98413 -17.48309 -17.12682 -17.03116 -16.73436 -16.34446 -15.94898 -15.77409 -15.52589 -15.48024 -15.18213 -15.04015 -14.78211 -14.49931 -14.14535 -13.83025 -13.74000 -13.49855 -13.34872 -13.13735 -13.02914 -12.90355 -12.87037 -12.68011 -12.62181 -12.52217 -12.36018 -12.28730 -12.05593 -11.96307 -11.82830 -11.65925 -11.58437 -10.76392 -10.59900 -9.98731 -9.90735 -9.20869 -8.64667 -7.83295 -5.27646 0.14059 0.26651 1.40364 1.44614 1.46571 1.51507 1.72978 2.48987 2.54375 2.63102 3.25920 3.33175 3.49534 3.59148 3.71529 3.75721 3.82617 3.95742 4.13995 4.20647 4.31244 4.36589 4.39666 4.42151 4.52361 4.54939 4.70011 4.77138 4.87227 4.92099 4.95344 5.01242 5.05444 5.11260 5.14594 5.18497 5.27366 5.29813 5.37599 5.43154 5.43665 5.63923 5.67263 5.72627 5.84747 6.24121 6.38216 6.60326 7.21096 7.28000 7.92234 8.32904 9.19848 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.003379 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.513167 B = 8283.655047 C = 8805.390770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.077 3.923 4 H 0.138 0.862 5 O -0.313 6.313 6 C 0.073 3.927 7 C -0.188 4.188 8 C -0.076 4.076 9 C -0.123 4.123 10 C -0.115 4.115 11 C 0.021 3.979 12 F -0.159 7.159 13 C 0.506 3.494 14 O -0.586 6.586 15 N -0.681 5.681 16 C 0.122 3.878 17 H 0.031 0.969 18 C -0.146 4.146 19 C 0.143 3.857 20 N -0.610 5.610 21 C 0.166 3.834 22 C -0.261 4.261 23 H 0.062 0.938 24 C -0.042 4.042 25 N -0.919 5.919 26 Si 0.952 3.048 27 H -0.270 1.270 28 H -0.288 1.288 29 H -0.305 1.305 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.037 0.963 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.159 0.841 39 H 0.407 0.593 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.017 0.983 46 H 0.020 0.980 47 H 0.034 0.966 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.267 14.691 8.830 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.018 3.982 4 H 0.155 0.845 5 O -0.226 6.226 6 C 0.028 3.972 7 C -0.206 4.206 8 C -0.094 4.094 9 C -0.141 4.141 10 C -0.134 4.134 11 C 0.002 3.998 12 F -0.138 7.138 13 C 0.291 3.709 14 O -0.466 6.466 15 N -0.332 5.332 16 C 0.014 3.986 17 H 0.050 0.950 18 C -0.205 4.205 19 C 0.017 3.983 20 N -0.332 5.332 21 C 0.022 3.978 22 C -0.391 4.391 23 H 0.079 0.921 24 C -0.238 4.238 25 N -0.565 5.565 26 Si 0.782 3.218 27 H -0.194 1.194 28 H -0.214 1.214 29 H -0.233 1.233 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.114 0.886 35 H 0.177 0.823 36 H 0.191 0.809 37 H 0.190 0.810 38 H 0.176 0.824 39 H 0.244 0.756 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.052 0.948 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -14.697 14.851 7.950 22.355 hybrid contribution 0.932 -1.373 -1.499 2.236 sum -13.765 13.478 6.451 20.317 Atomic orbital electron populations 1.21861 0.92250 1.03151 1.02667 1.21873 0.98704 0.92278 1.03473 1.22500 0.91470 0.96151 0.88087 0.84469 1.86263 1.43004 1.58964 1.34371 1.19543 0.89007 0.93030 0.95655 1.21567 0.97938 1.04393 0.96725 1.21514 0.94630 0.93119 1.00099 1.21416 1.00812 1.00612 0.91237 1.21351 0.92341 0.97750 1.01928 1.17711 0.95946 1.04112 0.82062 1.91440 1.76940 1.95631 1.49810 1.20769 0.90385 0.77884 0.81821 1.90662 1.66460 1.47963 1.41489 1.45618 1.08045 1.57716 1.21851 1.21748 0.79452 0.97388 0.99976 0.95013 1.22030 1.02277 0.95087 1.01096 1.21369 0.98365 0.83212 0.95398 1.44049 1.19455 1.20669 1.49055 1.20769 0.85936 0.97619 0.93525 1.19417 0.90291 1.19185 1.10245 0.92056 1.25617 0.96589 1.02783 0.98842 1.70125 1.07270 1.40210 1.38907 0.85436 0.78967 0.79331 0.78089 1.19416 1.21428 1.23299 0.93596 0.91478 0.89028 0.94440 0.88601 0.82339 0.80942 0.81041 0.82386 0.75579 0.90448 0.94661 0.89890 0.91918 0.90056 0.96467 0.96073 0.94785 0.94764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.49 71.98 0.61 -2.70 16 2 C -0.13 -3.98 5.59 30.59 0.17 -3.81 16 3 C 0.08 2.48 2.54 29.85 0.08 2.55 16 4 H 0.14 3.10 5.40 -2.39 -0.01 3.09 16 5 O -0.31 -11.82 8.98 -73.94 -0.66 -12.48 16 6 C 0.07 2.16 5.64 22.53 0.13 2.29 16 7 C -0.19 -3.62 7.36 22.36 0.16 -3.45 16 8 C -0.08 -0.96 10.04 22.26 0.22 -0.73 16 9 C -0.12 -1.57 10.04 22.28 0.22 -1.34 16 10 C -0.12 -2.23 10.02 22.30 0.22 -2.01 16 11 C 0.02 0.63 7.31 22.45 0.16 0.79 16 12 F -0.16 -5.80 17.11 44.97 0.77 -5.03 16 13 C 0.51 20.51 7.20 87.66 0.63 21.14 16 14 O -0.59 -30.09 16.16 15.98 0.26 -29.83 16 15 N -0.68 -24.02 4.18 -442.52 -1.85 -25.87 16 16 C 0.12 4.49 2.88 44.99 0.13 4.62 16 17 H 0.03 1.52 7.58 -2.38 -0.02 1.51 16 18 C -0.15 -4.13 9.48 71.98 0.68 -3.45 16 19 C 0.14 5.13 5.33 86.38 0.46 5.59 16 20 N -0.61 -27.91 2.77 -726.94 -2.02 -29.92 16 21 C 0.17 7.09 7.84 127.77 1.00 8.09 16 22 C -0.26 -14.00 9.63 84.03 0.81 -13.19 16 23 H 0.06 3.29 7.85 -2.91 -0.02 3.27 16 24 C -0.04 -2.34 5.11 84.86 0.43 -1.90 16 25 N -0.92 -52.53 10.77 21.65 0.23 -52.30 16 26 Si 0.95 46.27 29.56 68.60 2.03 48.30 16 27 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 29 H -0.30 -15.46 7.11 99.48 0.71 -14.76 16 30 H 0.04 1.17 6.53 -2.39 -0.02 1.15 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 1.42 6.76 -2.39 -0.02 1.41 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 2.96 5.69 -2.39 -0.01 2.95 16 35 H 0.16 2.35 4.32 -2.91 -0.01 2.34 16 36 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 37 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.41 12.05 6.38 -92.70 -0.59 11.46 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 44 H 0.08 2.31 7.92 -2.39 -0.02 2.29 16 45 H 0.02 0.76 5.07 -2.39 -0.01 0.74 16 46 H 0.02 1.02 6.94 -2.39 -0.02 1.00 16 47 H 0.03 1.15 7.93 -2.39 -0.02 1.13 16 48 H 0.24 13.85 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -80.14 384.96 5.29 -74.85 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.39 Total: 19.80 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 6.13 Total: 12.49 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -3.63 Total: -108.09 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.41 Total: -42.32 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.77 Total: -5.03 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -80.14 5.29 -74.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275697028.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.593 kcal (2) G-P(sol) polarization free energy of solvation -80.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds