Wall clock time and date at job start Tue Mar 31 2020 22:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00287 * 2 1 4 4 H 1.09007 * 109.46513 * 30.00380 * 3 2 1 5 5 C 1.50695 * 109.47245 * 150.00086 * 3 2 1 6 6 O 1.21280 * 120.00160 * 5.00184 * 5 3 2 7 7 N 1.34773 * 119.99990 * 185.00211 * 5 3 2 8 8 C 1.46501 * 120.00045 * 179.97438 * 7 5 3 9 9 H 1.08993 * 109.47476 * 325.00500 * 8 7 5 10 10 C 1.53006 * 109.47059 * 85.00259 * 8 7 5 11 11 C 1.53006 * 109.47375 * 205.00004 * 8 7 5 12 12 C 1.53002 * 109.46654 * 65.00336 * 11 8 7 13 13 C 1.53006 * 109.46654 * 179.97438 * 12 11 8 14 14 N 1.46507 * 109.46722 * 179.97438 * 13 12 11 15 15 C 1.36928 * 119.99542 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00569 * 359.97438 * 15 14 13 17 17 C 1.38810 * 119.99878 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99810 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00362 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46989 * 89.99744 * 19 17 15 21 21 H 1.48498 * 109.47392 * 209.99714 * 19 17 15 22 22 H 1.48500 * 109.47067 * 329.99964 * 19 17 15 23 23 C 1.50696 * 109.47130 * 270.00497 * 3 2 1 24 24 C 1.38248 * 119.97128 * 144.99533 * 23 3 2 25 25 C 1.38196 * 120.02483 * 179.97438 * 24 23 3 26 26 C 1.38458 * 119.97492 * 0.02562 * 25 24 23 27 27 F 1.35104 * 120.02786 * 179.97438 * 26 25 24 28 28 C 1.38465 * 119.94675 * 0.24873 * 26 25 24 29 29 C 1.38197 * 119.97511 * 359.47283 * 28 26 25 30 30 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46613 * 299.99644 * 1 2 3 32 32 H 1.08992 * 109.47546 * 59.99685 * 1 2 3 33 33 H 0.96999 * 120.00184 * 0.02562 * 7 5 3 34 34 H 1.08999 * 109.47461 * 179.97438 * 10 8 7 35 35 H 1.08997 * 109.47139 * 300.00318 * 10 8 7 36 36 H 1.09007 * 109.46617 * 59.99947 * 10 8 7 37 37 H 1.08995 * 109.46767 * 185.00328 * 11 8 7 38 38 H 1.09001 * 109.47014 * 305.00315 * 11 8 7 39 39 H 1.08994 * 109.47275 * 300.00014 * 12 11 8 40 40 H 1.08992 * 109.47181 * 60.00105 * 12 11 8 41 41 H 1.08995 * 109.46767 * 299.99992 * 13 12 11 42 42 H 1.09001 * 109.47014 * 59.99978 * 13 12 11 43 43 H 0.97000 * 119.99687 * 359.97438 * 14 13 12 44 44 H 0.97011 * 119.99763 * 180.02562 * 18 17 15 45 45 H 1.08001 * 119.98881 * 0.02562 * 24 23 3 46 46 H 1.07995 * 120.01604 * 180.02562 * 25 24 23 47 47 H 1.08007 * 120.01064 * 179.75151 * 28 26 25 48 48 H 1.07994 * 119.98821 * 180.29814 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3387 1.2638 0.7104 6 8 3.7897 0.2044 1.0913 7 7 4.0255 2.4039 0.9223 8 6 5.3166 2.3635 1.6134 9 1 5.2953 1.5871 2.3781 10 6 6.4254 2.0559 0.6050 11 6 5.5862 3.7189 2.2701 12 6 4.5484 3.9701 3.3659 13 6 4.8184 5.3252 4.0230 14 7 3.8242 5.5660 5.0719 15 6 3.8658 6.7239 5.8017 16 1 4.6317 7.4594 5.6045 17 6 2.9242 6.9518 6.7958 18 7 1.9911 6.0553 7.0365 19 14 2.9813 8.5310 7.7920 20 1 2.1592 9.5697 7.1207 21 1 2.4438 8.2775 9.1529 22 1 4.3861 9.0013 7.8942 23 6 2.2145 1.7644 -1.4208 24 6 2.0568 3.0990 -1.7449 25 6 2.2443 3.5212 -3.0473 26 6 2.5898 2.6068 -4.0280 27 9 2.7729 3.0183 -5.3017 28 6 2.7419 1.2694 -3.7032 29 6 2.5595 0.8505 -2.3990 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.6646 3.2513 0.6180 34 1 7.3861 2.0263 1.1190 35 1 6.2334 1.0903 0.1371 36 1 6.4467 2.8324 -0.1597 37 1 6.5843 3.7182 2.7082 38 1 5.5196 4.5062 1.5192 39 1 3.5504 3.9708 2.9278 40 1 4.6150 3.1829 4.1168 41 1 5.8164 5.3240 4.4612 42 1 4.7521 6.1127 3.2723 43 1 3.1362 4.9056 5.2487 44 1 1.3328 6.2148 7.7310 45 1 1.7877 3.8122 -0.9797 46 1 2.1214 4.5639 -3.3003 47 1 3.0075 0.5546 -4.4681 48 1 2.6829 -0.1918 -2.1446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277362538.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:31 Heat of formation + Delta-G solvation = -101.290661 kcal Electronic energy + Delta-G solvation = -29111.138303 eV Core-core repulsion = 24887.634926 eV Total energy + Delta-G solvation = -4223.503378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.26417 -40.68266 -39.13637 -37.79122 -36.59292 -34.84991 -32.94246 -32.07677 -31.54621 -30.85427 -29.40726 -27.94739 -26.08639 -25.60674 -23.45538 -23.16743 -22.47671 -21.17281 -20.80748 -20.53649 -18.15078 -17.72618 -17.31661 -17.04442 -16.94850 -16.34375 -15.94843 -15.82371 -15.03805 -14.97465 -14.70193 -14.64614 -14.35735 -14.10476 -13.90881 -13.76716 -13.60605 -13.48762 -13.10978 -13.01772 -12.76995 -12.61434 -12.22358 -12.13825 -12.10276 -11.76160 -11.36771 -11.32713 -11.17625 -10.87583 -10.82050 -10.50060 -10.43877 -10.37425 -10.02741 -9.85852 -9.70048 -9.53378 -9.15205 -8.96819 -8.87917 -6.92838 -5.77410 -3.06090 0.61678 0.81272 2.46120 2.64839 3.10155 3.42327 3.47438 3.49411 3.75339 3.85028 4.16373 4.32160 4.47180 4.52200 4.58694 4.66954 4.78105 4.85015 4.99928 5.02841 5.08782 5.11237 5.13747 5.41279 5.41401 5.45856 5.52389 5.55035 5.56509 5.62389 5.69648 5.76785 5.80864 5.93576 5.97329 6.06368 6.09463 6.18965 6.33909 6.38938 6.42111 6.44038 6.67226 6.84765 6.88248 7.37459 7.68686 8.09790 8.41728 9.52564 10.11447 10.45749 11.45565 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011804 B = 0.002313 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.466241 B =12102.539484 C =12218.814718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.114 3.886 4 H 0.100 0.900 5 C 0.522 3.478 6 O -0.516 6.516 7 N -0.716 5.716 8 C 0.143 3.857 9 H 0.090 0.910 10 C -0.162 4.162 11 C -0.123 4.123 12 C -0.126 4.126 13 C 0.153 3.847 14 N -0.735 5.735 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.126 4.126 24 C -0.079 4.079 25 C -0.152 4.152 26 C 0.104 3.896 27 F -0.139 7.139 28 C -0.155 4.155 29 C -0.057 4.057 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.017 0.983 42 H 0.016 0.984 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 -10.645 -23.611 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.269 6.269 3 C 0.052 3.948 4 H 0.117 0.883 5 C 0.306 3.694 6 O -0.391 6.391 7 N -0.369 5.369 8 C 0.039 3.961 9 H 0.108 0.892 10 C -0.220 4.220 11 C -0.161 4.161 12 C -0.164 4.164 13 C 0.025 3.975 14 N -0.379 5.379 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C -0.127 4.127 24 C -0.097 4.097 25 C -0.171 4.171 26 C 0.084 3.916 27 F -0.118 7.118 28 C -0.174 4.174 29 C -0.075 4.075 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.234 0.766 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.156 0.844 46 H 0.157 0.843 47 H 0.155 0.845 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.739 -11.433 -23.295 25.960 hybrid contribution -0.673 1.459 0.209 1.620 sum 0.066 -9.974 -23.086 25.149 Atomic orbital electron populations 1.22943 0.80152 1.03467 1.00470 1.88035 1.20076 1.24115 1.94632 1.20730 0.94569 0.87544 0.91963 0.88266 1.20014 0.85505 0.84442 0.79399 1.90726 1.68892 1.29641 1.49826 1.45972 1.21882 1.09137 1.59895 1.21070 0.81632 0.99119 0.94265 0.89172 1.22170 0.98409 1.01929 0.99519 1.21858 1.00741 0.95170 0.98359 1.21736 0.98355 0.99023 0.97239 1.20650 0.93036 0.92998 0.90798 1.42382 1.33704 1.22104 1.39680 1.19240 1.10427 0.95880 1.11505 0.91221 1.24753 0.98128 0.98464 0.99780 1.69668 1.18471 1.34938 1.35219 0.86185 0.77419 0.82991 0.79578 1.21732 1.21746 1.20759 1.20148 1.03145 0.94083 0.95348 1.20932 0.97797 0.94918 0.96085 1.21124 1.03082 1.00199 0.92657 1.17812 1.01317 0.93275 0.79169 1.91515 1.92754 1.91008 1.36526 1.21193 1.03883 0.94323 0.98017 1.20910 0.94935 1.00643 0.91034 0.88907 0.93286 0.93707 0.76609 0.91471 0.92309 0.92531 0.90141 0.91391 0.92143 0.91877 0.96471 0.96584 0.78348 0.93523 0.84415 0.84262 0.84514 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.81 101.05 1.09 1.29 16 2 O -0.35 -3.91 9.03 -55.09 -0.50 -4.41 16 3 C 0.11 1.13 2.73 -29.04 -0.08 1.05 16 4 H 0.10 0.80 7.70 -51.93 -0.40 0.40 16 5 C 0.52 6.51 7.13 -10.99 -0.08 6.43 16 6 O -0.52 -8.53 16.17 -14.30 -0.23 -8.77 16 7 N -0.72 -7.54 4.48 -53.80 -0.24 -7.78 16 8 C 0.14 1.60 2.57 -67.92 -0.17 1.42 16 9 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 10 C -0.16 -1.61 9.48 37.16 0.35 -1.25 16 11 C -0.12 -1.39 4.75 -26.73 -0.13 -1.52 16 12 C -0.13 -1.91 5.22 -26.73 -0.14 -2.05 16 13 C 0.15 2.99 6.26 -4.03 -0.03 2.96 16 14 N -0.73 -18.68 5.60 -59.90 -0.34 -19.02 16 15 C -0.24 -6.73 9.99 -15.06 -0.15 -6.89 16 16 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 19 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.13 -1.08 4.91 -104.62 -0.51 -1.59 16 24 C -0.08 -0.57 9.51 -39.59 -0.38 -0.94 16 25 C -0.15 -1.14 10.03 -39.52 -0.40 -1.54 16 26 C 0.10 0.90 7.30 -39.42 -0.29 0.61 16 27 F -0.14 -1.33 17.27 2.25 0.04 -1.29 16 28 C -0.16 -1.27 10.03 -39.51 -0.40 -1.66 16 29 C -0.06 -0.50 9.35 -39.59 -0.37 -0.87 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.40 3.39 8.43 -40.82 -0.34 3.05 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16 45 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 47 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 48 H 0.14 1.27 7.63 -52.49 -0.40 0.87 16 LS Contribution 408.63 15.07 6.16 6.16 Total: -1.00 -34.49 408.63 -8.89 -43.38 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.72 Total: 7.08 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.77 Total: -5.09 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.15 Total: -54.42 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.73 Total: -13.18 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.49 -8.89 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277362538.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.912 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds