Wall clock time and date at job start Tue Mar 31 2020 22:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00287 * 2 1 4 4 H 1.09007 * 109.46513 * 30.00380 * 3 2 1 5 5 C 1.50695 * 109.47245 * 150.00086 * 3 2 1 6 6 O 1.21280 * 120.00160 * 5.00184 * 5 3 2 7 7 N 1.34773 * 119.99990 * 185.00211 * 5 3 2 8 8 C 1.46501 * 120.00045 * 179.97438 * 7 5 3 9 9 H 1.08993 * 109.47476 * 325.00500 * 8 7 5 10 10 C 1.53006 * 109.47059 * 85.00259 * 8 7 5 11 11 C 1.53006 * 109.47375 * 205.00004 * 8 7 5 12 12 C 1.53002 * 109.46654 * 65.00336 * 11 8 7 13 13 C 1.53006 * 109.46654 * 179.97438 * 12 11 8 14 14 N 1.46507 * 109.46722 * 179.97438 * 13 12 11 15 15 C 1.36928 * 119.99542 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00569 * 359.97438 * 15 14 13 17 17 C 1.38810 * 119.99878 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99810 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00362 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46989 * 89.99744 * 19 17 15 21 21 H 1.48498 * 109.47392 * 209.99714 * 19 17 15 22 22 H 1.48500 * 109.47067 * 329.99964 * 19 17 15 23 23 C 1.50696 * 109.47130 * 270.00497 * 3 2 1 24 24 C 1.38248 * 119.97128 * 144.99533 * 23 3 2 25 25 C 1.38196 * 120.02483 * 179.97438 * 24 23 3 26 26 C 1.38458 * 119.97492 * 0.02562 * 25 24 23 27 27 F 1.35104 * 120.02786 * 179.97438 * 26 25 24 28 28 C 1.38465 * 119.94675 * 0.24873 * 26 25 24 29 29 C 1.38197 * 119.97511 * 359.47283 * 28 26 25 30 30 H 1.09000 * 109.46697 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46613 * 299.99644 * 1 2 3 32 32 H 1.08992 * 109.47546 * 59.99685 * 1 2 3 33 33 H 0.96999 * 120.00184 * 0.02562 * 7 5 3 34 34 H 1.08999 * 109.47461 * 179.97438 * 10 8 7 35 35 H 1.08997 * 109.47139 * 300.00318 * 10 8 7 36 36 H 1.09007 * 109.46617 * 59.99947 * 10 8 7 37 37 H 1.08995 * 109.46767 * 185.00328 * 11 8 7 38 38 H 1.09001 * 109.47014 * 305.00315 * 11 8 7 39 39 H 1.08994 * 109.47275 * 300.00014 * 12 11 8 40 40 H 1.08992 * 109.47181 * 60.00105 * 12 11 8 41 41 H 1.08995 * 109.46767 * 299.99992 * 13 12 11 42 42 H 1.09001 * 109.47014 * 59.99978 * 13 12 11 43 43 H 0.97000 * 119.99687 * 359.97438 * 14 13 12 44 44 H 0.97011 * 119.99763 * 180.02562 * 18 17 15 45 45 H 1.08001 * 119.98881 * 0.02562 * 24 23 3 46 46 H 1.07995 * 120.01604 * 180.02562 * 25 24 23 47 47 H 1.08007 * 120.01064 * 179.75151 * 28 26 25 48 48 H 1.07994 * 119.98821 * 180.29814 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3387 1.2638 0.7104 6 8 3.7897 0.2044 1.0913 7 7 4.0255 2.4039 0.9223 8 6 5.3166 2.3635 1.6134 9 1 5.2953 1.5871 2.3781 10 6 6.4254 2.0559 0.6050 11 6 5.5862 3.7189 2.2701 12 6 4.5484 3.9701 3.3659 13 6 4.8184 5.3252 4.0230 14 7 3.8242 5.5660 5.0719 15 6 3.8658 6.7239 5.8017 16 1 4.6317 7.4594 5.6045 17 6 2.9242 6.9518 6.7958 18 7 1.9911 6.0553 7.0365 19 14 2.9813 8.5310 7.7920 20 1 2.1592 9.5697 7.1207 21 1 2.4438 8.2775 9.1529 22 1 4.3861 9.0013 7.8942 23 6 2.2145 1.7644 -1.4208 24 6 2.0568 3.0990 -1.7449 25 6 2.2443 3.5212 -3.0473 26 6 2.5898 2.6068 -4.0280 27 9 2.7729 3.0183 -5.3017 28 6 2.7419 1.2694 -3.7032 29 6 2.5595 0.8505 -2.3990 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.6646 3.2513 0.6180 34 1 7.3861 2.0263 1.1190 35 1 6.2334 1.0903 0.1371 36 1 6.4467 2.8324 -0.1597 37 1 6.5843 3.7182 2.7082 38 1 5.5196 4.5062 1.5192 39 1 3.5504 3.9708 2.9278 40 1 4.6150 3.1829 4.1168 41 1 5.8164 5.3240 4.4612 42 1 4.7521 6.1127 3.2723 43 1 3.1362 4.9056 5.2487 44 1 1.3328 6.2148 7.7310 45 1 1.7877 3.8122 -0.9797 46 1 2.1214 4.5639 -3.3003 47 1 3.0075 0.5546 -4.4681 48 1 2.6829 -0.1918 -2.1446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277362538.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:30 Heat of formation + Delta-G solvation = -122.415818 kcal Electronic energy + Delta-G solvation = -29112.054359 eV Core-core repulsion = 24887.634926 eV Total energy + Delta-G solvation = -4224.419433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.94218 -41.51176 -39.91855 -38.56203 -37.74471 -36.46921 -34.26365 -33.27928 -32.14264 -32.03267 -30.78175 -28.62450 -27.23512 -26.69782 -24.80486 -24.05151 -23.34215 -22.39665 -21.92227 -21.46261 -19.11876 -18.80851 -18.54304 -18.08112 -17.67884 -17.20377 -16.66283 -16.61506 -16.58121 -15.88031 -15.80709 -15.63203 -15.45660 -15.28834 -15.12492 -14.77939 -14.50480 -14.41742 -14.27892 -13.87337 -13.77977 -13.42957 -13.33150 -13.18528 -13.01960 -12.81061 -12.76454 -12.40678 -12.37097 -12.23733 -12.06836 -11.97763 -11.84359 -11.69236 -11.48667 -11.21596 -10.91766 -10.69723 -10.12832 -10.10488 -9.65305 -8.98939 -7.94806 -5.23686 -0.02427 0.21926 1.48078 1.49802 1.52877 1.58336 1.83456 2.47482 2.56729 3.02691 3.22006 3.39106 3.47079 3.61980 3.73436 3.79317 3.91064 3.99904 4.02312 4.13058 4.28492 4.30696 4.39267 4.42189 4.50380 4.53540 4.60710 4.69384 4.83513 4.85039 4.87858 4.89304 4.93168 4.93640 5.01363 5.10595 5.13805 5.18652 5.31581 5.36203 5.38820 5.45231 5.52300 5.56838 5.82689 5.98387 6.28007 6.52457 7.19645 7.33732 8.11372 8.33135 9.28933 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011804 B = 0.002313 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.466241 B =12102.539484 C =12218.814718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.379 6.379 3 C 0.117 3.883 4 H 0.120 0.880 5 C 0.518 3.482 6 O -0.566 6.566 7 N -0.705 5.705 8 C 0.145 3.855 9 H 0.065 0.935 10 C -0.154 4.154 11 C -0.109 4.109 12 C -0.113 4.113 13 C 0.150 3.850 14 N -0.750 5.750 15 C -0.245 4.245 16 H 0.077 0.923 17 C -0.078 4.078 18 N -0.971 5.971 19 Si 0.974 3.026 20 H -0.285 1.285 21 H -0.297 1.297 22 H -0.269 1.269 23 C -0.129 4.129 24 C -0.073 4.073 25 C -0.149 4.149 26 C 0.090 3.910 27 F -0.147 7.147 28 C -0.157 4.157 29 C -0.067 4.067 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.412 0.588 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.018 0.982 42 H 0.028 0.972 43 H 0.372 0.628 44 H 0.251 0.749 45 H 0.163 0.837 46 H 0.158 0.842 47 H 0.147 0.853 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 -8.785 -24.723 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.297 6.297 3 C 0.055 3.945 4 H 0.137 0.863 5 C 0.303 3.697 6 O -0.444 6.444 7 N -0.359 5.359 8 C 0.041 3.959 9 H 0.083 0.917 10 C -0.212 4.212 11 C -0.147 4.147 12 C -0.151 4.151 13 C 0.024 3.976 14 N -0.393 5.393 15 C -0.377 4.377 16 H 0.094 0.906 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.194 1.194 23 C -0.130 4.130 24 C -0.091 4.091 25 C -0.168 4.168 26 C 0.070 3.930 27 F -0.126 7.126 28 C -0.176 4.176 29 C -0.085 4.085 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.249 0.751 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.203 0.797 44 H 0.060 0.940 45 H 0.180 0.820 46 H 0.176 0.824 47 H 0.165 0.835 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.199 -9.534 -24.451 26.271 hybrid contribution -0.774 0.853 0.515 1.261 sum 0.425 -8.681 -23.936 25.465 Atomic orbital electron populations 1.23100 0.78619 1.04399 1.01268 1.88003 1.21833 1.25048 1.94806 1.20746 0.93340 0.87693 0.92679 0.86252 1.20556 0.86290 0.84023 0.78783 1.90700 1.70270 1.31409 1.52003 1.45918 1.21553 1.09344 1.59043 1.20982 0.82447 0.98269 0.94215 0.91699 1.22092 0.98299 1.01435 0.99420 1.21751 0.99792 0.95691 0.97457 1.21600 0.99839 0.95966 0.97724 1.20861 0.91486 0.95540 0.89740 1.42652 1.34605 1.21185 1.40842 1.19663 1.10022 0.96661 1.11364 0.90550 1.25596 0.98236 1.01802 1.01380 1.69826 1.19410 1.36956 1.36008 0.85132 0.77881 0.79210 0.77503 1.21147 1.22329 1.19422 1.20087 1.03703 0.94758 0.94402 1.21154 0.96825 0.94542 0.96575 1.21361 1.02099 1.00924 0.92372 1.18020 1.02029 0.93712 0.79192 1.91496 1.92916 1.91065 1.37083 1.21290 1.03618 0.94645 0.98021 1.20891 0.95696 1.00433 0.91526 0.88080 0.92867 0.92403 0.75100 0.90264 0.94070 0.90944 0.89150 0.89141 0.91972 0.93641 0.96438 0.95435 0.79652 0.94022 0.81957 0.82441 0.83480 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.81 113.37 1.23 1.55 16 2 O -0.38 -8.43 9.03 -129.99 -1.17 -9.61 16 3 C 0.12 2.21 2.73 29.10 0.08 2.29 16 4 H 0.12 1.71 7.70 -2.38 -0.02 1.69 16 5 C 0.52 12.80 7.13 87.66 0.63 13.43 16 6 O -0.57 -19.32 16.17 15.96 0.26 -19.06 16 7 N -0.71 -13.92 4.48 -442.53 -1.98 -15.90 16 8 C 0.15 3.06 2.57 45.00 0.12 3.17 16 9 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 10 C -0.15 -2.80 9.48 71.98 0.68 -2.12 16 11 C -0.11 -2.19 4.75 30.60 0.15 -2.04 16 12 C -0.11 -3.29 5.22 30.60 0.16 -3.13 16 13 C 0.15 5.63 6.26 86.38 0.54 6.17 16 14 N -0.75 -37.84 5.60 -343.43 -1.92 -39.76 16 15 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 16 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 18 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16 19 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 C -0.13 -2.03 4.91 -19.86 -0.10 -2.13 16 24 C -0.07 -0.86 9.51 22.26 0.21 -0.65 16 25 C -0.15 -1.88 10.03 22.31 0.22 -1.65 16 26 C 0.09 1.42 7.30 22.38 0.16 1.59 16 27 F -0.15 -2.63 17.27 44.97 0.78 -1.86 16 28 C -0.16 -2.44 10.03 22.31 0.22 -2.21 16 29 C -0.07 -1.15 9.35 22.26 0.21 -0.94 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 0.72 8.08 -2.39 -0.02 0.71 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.41 5.95 8.43 -92.71 -0.78 5.16 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.37 20.09 7.67 -92.71 -0.71 19.37 16 44 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 45 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 46 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 47 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 48 H 0.13 2.45 7.63 -2.91 -0.02 2.43 16 Total: -1.00 -74.98 408.63 3.55 -71.43 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -0.53 Total: 29.64 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.81 Total: -3.47 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -3.63 Total: -114.79 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.92 Total: -28.67 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.98 3.55 -71.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277362538.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.984 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds