Wall clock time and date at job start Tue Mar 31 2020 22:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99987 * 2 1 4 4 H 1.08997 * 109.47389 * 29.99917 * 3 2 1 5 5 C 1.50703 * 109.46889 * 270.00220 * 3 2 1 6 6 O 1.21282 * 119.99974 * 355.00039 * 5 3 2 7 7 N 1.34780 * 119.99879 * 174.99952 * 5 3 2 8 8 C 1.46505 * 119.99691 * 179.97438 * 7 5 3 9 9 H 1.08997 * 109.47388 * 324.99829 * 8 7 5 10 10 C 1.52998 * 109.46735 * 85.00218 * 8 7 5 11 11 C 1.53000 * 109.46791 * 204.99777 * 8 7 5 12 12 C 1.52998 * 109.47177 * 65.00483 * 11 8 7 13 13 C 1.52995 * 109.47570 * 179.97438 * 12 11 8 14 14 N 1.46496 * 109.47402 * 179.97438 * 13 12 11 15 15 C 1.36942 * 120.00190 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99617 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00165 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99887 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00061 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46769 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46946 * 119.99998 * 19 17 15 22 22 H 1.48497 * 109.46957 * 240.00081 * 19 17 15 23 23 C 1.50698 * 109.47296 * 150.00268 * 3 2 1 24 24 C 1.38244 * 119.97167 * 219.99686 * 23 3 2 25 25 C 1.38205 * 120.02298 * 180.02562 * 24 23 3 26 26 C 1.38459 * 119.97412 * 0.24026 * 25 24 23 27 27 F 1.35099 * 120.02759 * 179.72396 * 26 25 24 28 28 C 1.38466 * 119.94836 * 359.48301 * 26 25 24 29 29 C 1.38196 * 119.97140 * 0.53984 * 28 26 25 30 30 H 1.08994 * 109.47374 * 60.00131 * 1 2 3 31 31 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47294 * 300.00230 * 1 2 3 33 33 H 0.96993 * 120.00294 * 359.97438 * 7 5 3 34 34 H 1.09005 * 109.47229 * 59.99817 * 10 8 7 35 35 H 1.09001 * 109.47183 * 179.97438 * 10 8 7 36 36 H 1.09003 * 109.47423 * 299.99656 * 10 8 7 37 37 H 1.09004 * 109.47228 * 184.99945 * 11 8 7 38 38 H 1.09001 * 109.47516 * 305.00350 * 11 8 7 39 39 H 1.09007 * 109.47102 * 299.99927 * 12 11 8 40 40 H 1.09001 * 109.47006 * 59.99555 * 12 11 8 41 41 H 1.09007 * 109.47113 * 300.00245 * 13 12 11 42 42 H 1.09001 * 109.47054 * 59.99909 * 13 12 11 43 43 H 0.97000 * 120.00432 * 0.02562 * 14 13 12 44 44 H 0.97005 * 119.99596 * 179.97438 * 18 17 15 45 45 H 1.07999 * 119.98898 * 0.02589 * 24 23 3 46 46 H 1.08002 * 120.00949 * 179.97438 * 25 24 23 47 47 H 1.07997 * 120.00962 * 180.25357 * 28 26 25 48 48 H 1.08000 * 119.98525 * 179.74601 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4209 6 8 1.9790 1.0106 -2.3413 7 7 2.6588 3.0125 -1.6687 8 6 2.8578 3.4583 -3.0499 9 1 3.2090 2.6222 -3.6546 10 6 1.5333 3.9755 -3.6147 11 6 3.8974 4.5806 -3.0787 12 6 5.2535 4.0312 -2.6313 13 6 6.2932 5.1532 -2.6607 14 7 7.5915 4.6273 -2.2318 15 6 8.6816 5.4544 -2.1787 16 1 8.5841 6.4945 -2.4526 17 6 9.9119 4.9560 -1.7728 18 7 10.0308 3.6883 -1.4394 19 14 11.3988 6.0844 -1.6997 20 1 11.0031 7.4523 -2.1209 21 1 11.9205 6.1263 -0.3100 22 1 12.4544 5.5717 -2.6095 23 6 3.3386 1.2639 0.7103 24 6 3.7057 2.2993 1.5496 25 6 4.9240 2.2626 2.2011 26 6 5.7790 1.1906 2.0092 27 9 6.9726 1.1563 2.6412 28 6 5.4078 0.1514 1.1728 29 6 4.1893 0.1906 0.5220 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.8467 3.6154 -0.9325 34 1 1.1822 4.8117 -3.0100 35 1 1.6814 4.3076 -4.6423 36 1 0.7926 3.1760 -3.5942 37 1 3.9808 4.9727 -4.0923 38 1 3.5886 5.3793 -2.4043 39 1 5.1701 3.6390 -1.6177 40 1 5.5622 3.2325 -3.3057 41 1 6.3764 5.5451 -3.6745 42 1 5.9846 5.9522 -1.9866 43 1 7.6792 3.6931 -1.9860 44 1 10.8906 3.3399 -1.1561 45 1 3.0402 3.1372 1.6961 46 1 5.2107 3.0718 2.8564 47 1 6.0722 -0.6871 1.0256 48 1 3.9013 -0.6179 -0.1336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277362539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:36 Heat of formation + Delta-G solvation = -101.017808 kcal Electronic energy + Delta-G solvation = -29899.344812 eV Core-core repulsion = 25675.853266 eV Total energy + Delta-G solvation = -4223.491546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.80197 -40.60354 -38.90780 -37.75684 -36.50658 -34.81295 -32.89081 -32.02814 -31.24334 -30.80306 -29.37137 -27.59305 -26.20446 -25.58202 -23.15595 -23.09345 -22.27726 -21.09294 -20.76099 -20.51546 -17.88444 -17.65750 -17.19695 -16.98191 -16.79942 -16.14180 -15.70164 -15.48290 -15.02443 -14.69638 -14.63603 -14.62685 -14.33782 -13.86822 -13.73407 -13.60586 -13.54412 -13.30947 -13.05638 -12.95525 -12.66568 -12.35482 -12.24178 -12.10808 -11.88747 -11.58631 -11.30512 -11.17147 -11.06731 -10.86853 -10.82213 -10.79059 -10.44332 -10.39001 -9.96552 -9.67101 -9.58310 -9.19116 -9.14649 -8.84266 -8.64407 -6.88067 -5.72626 -3.01456 0.94653 1.15608 2.44880 2.88540 3.31016 3.45060 3.50137 3.52848 3.69914 4.23327 4.38619 4.51078 4.53993 4.61147 4.73614 4.79018 4.85048 5.02975 5.04559 5.12948 5.14222 5.16555 5.32990 5.40412 5.42197 5.54658 5.60429 5.61125 5.75710 5.77919 5.84269 5.94411 6.03454 6.05103 6.12018 6.13973 6.21173 6.22945 6.37315 6.42407 6.44629 6.69517 6.78374 6.88417 6.91611 7.39346 7.72990 8.10358 8.45991 9.56906 10.16096 10.50325 11.50148 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.003601 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.994297 B = 7773.836539 C =10084.567099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.121 3.879 4 H 0.094 0.906 5 C 0.497 3.503 6 O -0.524 6.524 7 N -0.715 5.715 8 C 0.141 3.859 9 H 0.089 0.911 10 C -0.161 4.161 11 C -0.122 4.122 12 C -0.125 4.125 13 C 0.154 3.846 14 N -0.734 5.734 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.931 5.931 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.292 1.292 23 C -0.110 4.110 24 C -0.079 4.079 25 C -0.150 4.150 26 C 0.118 3.882 27 F -0.134 7.134 28 C -0.152 4.152 29 C -0.054 4.054 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.400 0.600 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.133 0.867 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.570 -4.144 5.743 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.059 3.941 4 H 0.111 0.889 5 C 0.282 3.718 6 O -0.400 6.400 7 N -0.369 5.369 8 C 0.037 3.963 9 H 0.107 0.893 10 C -0.220 4.220 11 C -0.161 4.161 12 C -0.163 4.163 13 C 0.026 3.974 14 N -0.378 5.378 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.111 4.111 24 C -0.097 4.097 25 C -0.168 4.168 26 C 0.099 3.901 27 F -0.112 7.112 28 C -0.171 4.171 29 C -0.072 4.072 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.234 0.766 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.151 0.849 46 H 0.158 0.842 47 H 0.156 0.844 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.490 -4.728 5.072 23.535 hybrid contribution 1.139 0.829 0.571 1.520 sum -21.351 -3.900 5.644 22.426 Atomic orbital electron populations 1.22881 0.80357 1.03429 1.00028 1.88012 1.20173 1.24281 1.94420 1.20682 0.93745 0.87397 0.92273 0.88872 1.21081 0.77321 0.81920 0.91528 1.90711 1.49930 1.53646 1.45674 1.46087 1.67318 1.14225 1.09246 1.21061 0.95096 0.97838 0.82339 0.89320 1.22168 0.97433 1.01119 1.01241 1.21849 0.94477 0.96910 1.02837 1.21724 0.93697 0.99325 1.01549 1.20631 0.86072 0.93999 0.96674 1.42379 1.04070 1.10777 1.80557 1.19264 0.87770 0.92568 1.37468 0.91243 1.24745 0.97750 0.96181 1.02351 1.69678 1.24094 1.12526 1.51684 0.86141 0.83279 0.79708 0.77227 1.20593 1.21866 1.21873 1.19317 0.94890 0.96826 1.00059 1.20727 0.96136 0.97688 0.95118 1.21092 0.94491 0.98455 1.02807 1.17815 0.81847 0.95984 0.94483 1.91546 1.43229 1.96477 1.79958 1.21216 0.98179 0.99329 0.98366 1.20843 0.91807 0.97546 0.96979 0.93582 0.89027 0.93844 0.76602 0.92528 0.91479 0.92438 0.90262 0.91445 0.92034 0.92034 0.96591 0.96672 0.78337 0.93588 0.84905 0.84239 0.84351 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.81 101.05 1.09 1.33 16 2 O -0.35 -3.97 9.21 -55.09 -0.51 -4.47 16 3 C 0.12 1.22 2.72 -29.03 -0.08 1.14 16 4 H 0.09 0.65 7.65 -51.93 -0.40 0.25 16 5 C 0.50 6.13 7.08 -10.98 -0.08 6.05 16 6 O -0.52 -8.43 16.17 -14.31 -0.23 -8.66 16 7 N -0.72 -7.60 4.48 -53.80 -0.24 -7.85 16 8 C 0.14 1.58 2.57 -67.93 -0.17 1.41 16 9 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 10 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 11 C -0.12 -1.42 4.75 -26.73 -0.13 -1.55 16 12 C -0.12 -1.99 5.22 -26.73 -0.14 -2.13 16 13 C 0.15 3.10 6.26 -4.05 -0.03 3.08 16 14 N -0.73 -19.11 5.60 -59.91 -0.34 -19.45 16 15 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 19 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 23 C -0.11 -1.21 4.92 -104.62 -0.51 -1.72 16 24 C -0.08 -0.77 9.67 -39.59 -0.38 -1.15 16 25 C -0.15 -1.76 10.03 -39.51 -0.40 -2.15 16 26 C 0.12 1.65 7.30 -39.42 -0.29 1.36 16 27 F -0.13 -2.12 17.27 2.25 0.04 -2.08 16 28 C -0.15 -1.98 10.03 -39.51 -0.40 -2.37 16 29 C -0.05 -0.66 9.35 -39.59 -0.37 -1.03 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 33 H 0.40 3.49 8.60 -40.82 -0.35 3.14 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.38 10.59 7.67 -40.82 -0.31 10.27 16 44 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.13 0.84 8.04 -52.49 -0.42 0.42 16 46 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 47 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 48 H 0.14 1.70 7.78 -52.49 -0.41 1.29 16 LS Contribution 409.16 15.07 6.17 6.17 Total: -1.00 -35.22 409.16 -8.91 -44.13 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.73 Total: 8.99 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.77 Total: -6.44 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.15 Total: -55.37 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.74 Total: -13.14 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.22 -8.91 -44.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277362539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.893 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds