Wall clock time and date at job start Tue Mar 31 2020 22:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99987 * 2 1 4 4 H 1.08997 * 109.47389 * 29.99917 * 3 2 1 5 5 C 1.50703 * 109.46889 * 270.00220 * 3 2 1 6 6 O 1.21282 * 119.99974 * 355.00039 * 5 3 2 7 7 N 1.34780 * 119.99879 * 174.99952 * 5 3 2 8 8 C 1.46505 * 119.99691 * 179.97438 * 7 5 3 9 9 H 1.08997 * 109.47388 * 324.99829 * 8 7 5 10 10 C 1.52998 * 109.46735 * 85.00218 * 8 7 5 11 11 C 1.53000 * 109.46791 * 204.99777 * 8 7 5 12 12 C 1.52998 * 109.47177 * 65.00483 * 11 8 7 13 13 C 1.52995 * 109.47570 * 179.97438 * 12 11 8 14 14 N 1.46496 * 109.47402 * 179.97438 * 13 12 11 15 15 C 1.36942 * 120.00190 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99617 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00165 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99887 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00061 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46769 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46946 * 119.99998 * 19 17 15 22 22 H 1.48497 * 109.46957 * 240.00081 * 19 17 15 23 23 C 1.50698 * 109.47296 * 150.00268 * 3 2 1 24 24 C 1.38244 * 119.97167 * 219.99686 * 23 3 2 25 25 C 1.38205 * 120.02298 * 180.02562 * 24 23 3 26 26 C 1.38459 * 119.97412 * 0.24026 * 25 24 23 27 27 F 1.35099 * 120.02759 * 179.72396 * 26 25 24 28 28 C 1.38466 * 119.94836 * 359.48301 * 26 25 24 29 29 C 1.38196 * 119.97140 * 0.53984 * 28 26 25 30 30 H 1.08994 * 109.47374 * 60.00131 * 1 2 3 31 31 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47294 * 300.00230 * 1 2 3 33 33 H 0.96993 * 120.00294 * 359.97438 * 7 5 3 34 34 H 1.09005 * 109.47229 * 59.99817 * 10 8 7 35 35 H 1.09001 * 109.47183 * 179.97438 * 10 8 7 36 36 H 1.09003 * 109.47423 * 299.99656 * 10 8 7 37 37 H 1.09004 * 109.47228 * 184.99945 * 11 8 7 38 38 H 1.09001 * 109.47516 * 305.00350 * 11 8 7 39 39 H 1.09007 * 109.47102 * 299.99927 * 12 11 8 40 40 H 1.09001 * 109.47006 * 59.99555 * 12 11 8 41 41 H 1.09007 * 109.47113 * 300.00245 * 13 12 11 42 42 H 1.09001 * 109.47054 * 59.99909 * 13 12 11 43 43 H 0.97000 * 120.00432 * 0.02562 * 14 13 12 44 44 H 0.97005 * 119.99596 * 179.97438 * 18 17 15 45 45 H 1.07999 * 119.98898 * 0.02589 * 24 23 3 46 46 H 1.08002 * 120.00949 * 179.97438 * 25 24 23 47 47 H 1.07997 * 120.00962 * 180.25357 * 28 26 25 48 48 H 1.08000 * 119.98525 * 179.74601 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4209 6 8 1.9790 1.0106 -2.3413 7 7 2.6588 3.0125 -1.6687 8 6 2.8578 3.4583 -3.0499 9 1 3.2090 2.6222 -3.6546 10 6 1.5333 3.9755 -3.6147 11 6 3.8974 4.5806 -3.0787 12 6 5.2535 4.0312 -2.6313 13 6 6.2932 5.1532 -2.6607 14 7 7.5915 4.6273 -2.2318 15 6 8.6816 5.4544 -2.1787 16 1 8.5841 6.4945 -2.4526 17 6 9.9119 4.9560 -1.7728 18 7 10.0308 3.6883 -1.4394 19 14 11.3988 6.0844 -1.6997 20 1 11.0031 7.4523 -2.1209 21 1 11.9205 6.1263 -0.3100 22 1 12.4544 5.5717 -2.6095 23 6 3.3386 1.2639 0.7103 24 6 3.7057 2.2993 1.5496 25 6 4.9240 2.2626 2.2011 26 6 5.7790 1.1906 2.0092 27 9 6.9726 1.1563 2.6412 28 6 5.4078 0.1514 1.1728 29 6 4.1893 0.1906 0.5220 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.8467 3.6154 -0.9325 34 1 1.1822 4.8117 -3.0100 35 1 1.6814 4.3076 -4.6423 36 1 0.7926 3.1760 -3.5942 37 1 3.9808 4.9727 -4.0923 38 1 3.5886 5.3793 -2.4043 39 1 5.1701 3.6390 -1.6177 40 1 5.5622 3.2325 -3.3057 41 1 6.3764 5.5451 -3.6745 42 1 5.9846 5.9522 -1.9866 43 1 7.6792 3.6931 -1.9860 44 1 10.8906 3.3399 -1.1561 45 1 3.0402 3.1372 1.6961 46 1 5.2107 3.0718 2.8564 47 1 6.0722 -0.6871 1.0256 48 1 3.9013 -0.6179 -0.1336 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277362539.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:35 Heat of formation + Delta-G solvation = -123.319616 kcal Electronic energy + Delta-G solvation = -29900.311891 eV Core-core repulsion = 25675.853266 eV Total energy + Delta-G solvation = -4224.458625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.93533 -41.50880 -39.84573 -38.61145 -37.66600 -36.45461 -34.26729 -33.33077 -32.15548 -32.08292 -30.76812 -28.35879 -27.25508 -26.84374 -24.80434 -24.05457 -23.33381 -22.40951 -21.89537 -21.44804 -19.12502 -18.81678 -18.59144 -18.04548 -17.69379 -17.11560 -16.68785 -16.60895 -16.60139 -15.86626 -15.82263 -15.54706 -15.47712 -15.29259 -15.12089 -14.72009 -14.51316 -14.42092 -14.27633 -13.93980 -13.75006 -13.44000 -13.30634 -13.17273 -13.00688 -12.81336 -12.64455 -12.39457 -12.33416 -12.21035 -12.04232 -11.96234 -11.85956 -11.75803 -11.60330 -11.48725 -10.94214 -10.47076 -10.10471 -10.08491 -9.61447 -8.99897 -7.95077 -5.24467 -0.00507 0.23949 1.46106 1.47308 1.51838 1.57451 2.05531 2.43372 2.55492 2.90453 3.27363 3.38825 3.55128 3.62102 3.73636 3.78093 3.93012 3.99611 4.01396 4.11817 4.28475 4.30533 4.41476 4.42488 4.49676 4.57278 4.59763 4.69841 4.83950 4.86594 4.87206 4.88149 4.92440 4.94744 5.01610 5.13385 5.13885 5.19187 5.33027 5.33711 5.38131 5.43812 5.51147 5.58244 5.83175 5.99955 6.26679 6.55517 7.22147 7.32367 8.10050 8.31560 9.28554 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.003601 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.994297 B = 7773.836539 C =10084.567099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.378 6.378 3 C 0.125 3.875 4 H 0.137 0.863 5 C 0.494 3.506 6 O -0.569 6.569 7 N -0.706 5.706 8 C 0.143 3.857 9 H 0.058 0.942 10 C -0.153 4.153 11 C -0.109 4.109 12 C -0.112 4.112 13 C 0.151 3.849 14 N -0.750 5.750 15 C -0.244 4.244 16 H 0.078 0.922 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.293 1.293 22 H -0.295 1.295 23 C -0.107 4.107 24 C -0.064 4.064 25 C -0.153 4.153 26 C 0.083 3.917 27 F -0.153 7.153 28 C -0.166 4.166 29 C -0.067 4.067 30 H 0.038 0.962 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.018 0.982 42 H 0.028 0.972 43 H 0.370 0.630 44 H 0.250 0.750 45 H 0.181 0.819 46 H 0.155 0.845 47 H 0.137 0.863 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.817 -1.313 6.204 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.295 6.295 3 C 0.064 3.936 4 H 0.154 0.846 5 C 0.280 3.720 6 O -0.448 6.448 7 N -0.360 5.360 8 C 0.038 3.962 9 H 0.077 0.923 10 C -0.211 4.211 11 C -0.147 4.147 12 C -0.150 4.150 13 C 0.025 3.975 14 N -0.392 5.392 15 C -0.376 4.376 16 H 0.096 0.904 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.220 1.220 22 H -0.222 1.222 23 C -0.108 4.108 24 C -0.081 4.081 25 C -0.172 4.172 26 C 0.064 3.936 27 F -0.132 7.132 28 C -0.185 4.185 29 C -0.086 4.086 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.249 0.751 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.201 0.799 44 H 0.058 0.942 45 H 0.198 0.802 46 H 0.173 0.827 47 H 0.155 0.845 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -24.775 -1.841 5.531 25.451 hybrid contribution 1.753 -0.057 0.375 1.794 sum -23.021 -1.898 5.907 23.843 Atomic orbital electron populations 1.23065 0.78766 1.04381 1.00968 1.87990 1.22025 1.25086 1.94398 1.20768 0.93929 0.88053 0.90857 0.84571 1.21552 0.76526 0.81813 0.92128 1.90694 1.51979 1.54890 1.47202 1.46036 1.66364 1.14047 1.09510 1.20966 0.96077 0.96657 0.82459 0.92336 1.22081 0.95612 1.01259 1.02119 1.21758 0.91645 0.97337 1.03957 1.21577 0.94998 0.97417 1.00977 1.20853 0.84634 0.95509 0.96520 1.42663 1.05794 1.10067 1.80716 1.19691 0.88678 0.93151 1.36047 0.90438 1.25604 1.00807 0.97642 1.02954 1.69848 1.24409 1.14470 1.53364 0.85077 0.79388 0.78577 0.76771 1.18679 1.22020 1.22196 1.19531 0.94989 0.96434 0.99848 1.21167 0.95635 0.98199 0.93118 1.21402 0.94793 0.97937 1.03036 1.18223 0.82013 0.97563 0.95766 1.91487 1.44533 1.96699 1.80504 1.21286 0.98748 0.99556 0.98875 1.20893 0.92035 0.98425 0.97199 0.94278 0.88320 0.91076 0.75087 0.90380 0.90558 0.93714 0.89237 0.88882 0.92482 0.94189 0.96375 0.95389 0.79874 0.94161 0.80214 0.82747 0.84503 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.81 113.37 1.23 1.56 16 2 O -0.38 -8.02 9.21 -129.99 -1.20 -9.22 16 3 C 0.13 2.24 2.72 29.10 0.08 2.32 16 4 H 0.14 1.24 7.65 -2.39 -0.02 1.23 16 5 C 0.49 11.49 7.08 87.66 0.62 12.11 16 6 O -0.57 -18.36 16.17 15.95 0.26 -18.11 16 7 N -0.71 -13.33 4.48 -442.52 -1.98 -15.31 16 8 C 0.14 2.94 2.57 44.99 0.12 3.06 16 9 H 0.06 1.59 7.58 -2.39 -0.02 1.57 16 10 C -0.15 -2.46 9.48 71.98 0.68 -1.78 16 11 C -0.11 -2.22 4.75 30.59 0.15 -2.08 16 12 C -0.11 -3.43 5.22 30.59 0.16 -3.27 16 13 C 0.15 5.86 6.26 86.38 0.54 6.40 16 14 N -0.75 -39.07 5.60 -343.46 -1.92 -41.00 16 15 C -0.24 -13.86 9.99 84.03 0.84 -13.02 16 16 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 17 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 18 N -0.97 -61.21 13.06 21.65 0.28 -60.92 16 19 Si 0.97 46.86 29.55 68.60 2.03 48.89 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 23 C -0.11 -2.17 4.92 -19.86 -0.10 -2.27 16 24 C -0.06 -1.05 9.67 22.26 0.22 -0.83 16 25 C -0.15 -3.41 10.03 22.31 0.22 -3.18 16 26 C 0.08 2.41 7.30 22.38 0.16 2.57 16 27 F -0.15 -5.15 17.27 44.97 0.78 -4.38 16 28 C -0.17 -4.58 10.03 22.31 0.22 -4.36 16 29 C -0.07 -1.71 9.35 22.26 0.21 -1.50 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 33 H 0.41 5.61 8.60 -92.71 -0.80 4.81 16 34 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.80 7.75 -2.38 -0.02 1.78 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.37 20.91 7.67 -92.71 -0.71 20.20 16 44 H 0.25 15.28 8.31 -92.70 -0.77 14.51 16 45 H 0.18 1.24 8.04 -2.91 -0.02 1.22 16 46 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 47 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 48 H 0.13 3.42 7.78 -2.91 -0.02 3.39 16 Total: -1.00 -79.12 409.16 3.51 -75.61 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -0.54 Total: 32.82 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 5.81 Total: -8.38 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -3.63 Total: -117.23 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.94 Total: -27.32 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.78 Total: -4.38 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -79.12 3.51 -75.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277362539.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.707 kcal (2) G-P(sol) polarization free energy of solvation -79.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds