Wall clock time and date at job start Tue Mar 31 2020 20:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50690 * 120.00257 * 2 1 4 4 N 1.46912 * 109.47330 * 125.00130 * 3 2 1 5 5 C 1.48739 * 110.88362 * 69.87158 * 4 3 2 6 6 C 1.55109 * 103.17712 * 197.56207 * 5 4 3 7 7 C 1.52922 * 104.45593 * 31.45167 * 6 5 4 8 8 C 1.48419 * 111.12535 * 314.79838 * 4 3 2 9 9 C 1.50765 * 113.90166 * 231.35940 * 7 6 5 10 10 C 1.52908 * 111.05394 * 323.94358 * 9 7 6 11 11 C 1.47082 * 114.72349 * 276.72464 * 10 9 7 12 12 C 1.54455 * 110.69114 * 63.80819 * 11 10 9 13 13 N 1.44509 * 109.43392 * 287.53361 * 12 11 10 14 14 C 1.35234 * 118.19050 * 268.40775 * 13 12 11 15 15 O 1.21282 * 119.99874 * 180.25984 * 14 13 12 16 16 C 1.50704 * 120.00019 * 0.26645 * 14 13 12 17 17 S 1.80995 * 109.46836 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99746 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99921 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99728 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99748 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00381 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46936 * 90.00176 * 22 20 18 24 24 H 1.48505 * 109.47116 * 210.00045 * 22 20 18 25 25 H 1.48497 * 109.47046 * 330.00233 * 22 20 18 26 26 C 1.47226 * 123.68522 * 88.69024 * 13 12 11 27 27 H 1.08002 * 120.00286 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00067 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99440 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47356 * 5.00256 * 3 2 1 31 31 H 1.09000 * 109.47559 * 244.99993 * 3 2 1 32 32 H 1.08847 * 110.21175 * 79.88905 * 5 4 3 33 33 H 1.08595 * 111.02872 * 316.06978 * 5 4 3 34 34 H 1.08839 * 108.57254 * 272.00928 * 6 5 4 35 35 H 1.08980 * 110.12322 * 150.41020 * 6 5 4 36 36 H 1.09045 * 110.18336 * 38.19498 * 8 4 3 37 37 H 1.08893 * 111.07488 * 275.50284 * 8 4 3 38 38 H 1.09244 * 109.04105 * 84.21557 * 9 7 6 39 39 H 1.09119 * 109.41824 * 203.34357 * 9 7 6 40 40 H 1.07927 * 110.90903 * 40.94699 * 10 9 7 41 41 H 1.09939 * 107.26338 * 157.67081 * 10 9 7 42 42 H 1.09013 * 109.10869 * 184.26077 * 11 10 9 43 43 H 1.09141 * 108.89339 * 303.37879 * 11 10 9 44 44 H 1.09136 * 109.27749 * 167.70906 * 12 11 10 45 45 H 1.08744 * 109.87418 * 47.87930 * 12 11 10 46 46 H 1.08991 * 109.47007 * 299.99648 * 16 14 13 47 47 H 1.08995 * 109.46663 * 59.99993 * 16 14 13 48 48 H 0.96995 * 120.00247 * 179.97438 * 21 20 18 49 49 H 1.09177 * 108.92677 * 81.14055 * 26 13 12 50 50 H 1.09037 * 108.87028 * 199.09519 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9964 1.3318 1.1346 5 6 4.1125 0.3709 0.9262 6 6 4.7021 0.1995 2.3506 7 6 3.5031 0.3739 3.2836 8 6 2.3409 0.8543 2.3776 9 6 3.7273 1.3784 4.3853 10 6 5.1713 1.3315 4.8859 11 6 5.4423 0.2872 5.8856 12 6 5.2358 -1.1174 5.2772 13 7 3.8230 -1.3587 5.0929 14 6 3.1417 -1.9603 6.0942 15 8 1.9557 -2.1829 5.9725 16 6 3.8561 -2.3542 7.3614 17 16 2.6822 -3.1304 8.4995 18 6 3.7540 -3.4788 9.8539 19 1 4.7988 -3.2113 9.7984 20 6 3.2556 -4.0980 10.9918 21 7 4.0564 -4.3588 12.0034 22 14 1.4485 -4.5614 11.0876 23 1 1.2615 -5.9365 10.5593 24 1 0.9984 -4.5090 12.5018 25 1 0.6493 -3.6071 10.2779 26 6 3.0842 -0.9916 3.8735 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 4.8583 0.7997 0.2594 33 1 3.7441 -0.5782 0.5483 34 1 5.4538 0.9704 2.5096 35 1 5.1352 -0.7945 2.4600 36 1 1.6688 0.0252 2.1538 37 1 1.7989 1.6607 2.8691 38 1 3.5132 2.3794 4.0038 39 1 3.0528 1.1629 5.2155 40 1 5.8609 1.2211 4.0630 41 1 5.3840 2.3004 5.3598 42 1 6.4710 0.3839 6.2329 43 1 4.7640 0.4218 6.7300 44 1 5.6471 -1.8676 5.9548 45 1 5.7447 -1.1834 4.3184 46 1 4.6534 -3.0587 7.1249 47 1 4.2823 -1.4666 7.8289 48 1 3.7082 -4.7911 12.7987 49 1 3.2487 -1.7596 3.1151 50 1 2.0187 -0.9588 4.1031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278327608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:05 Heat of formation + Delta-G solvation = -3.706775 kcal Electronic energy + Delta-G solvation = -28264.341610 eV Core-core repulsion = 24611.282963 eV Total energy + Delta-G solvation = -3653.058647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97652 -39.23264 -37.21112 -34.93810 -33.60857 -32.46225 -32.43307 -30.01411 -29.47885 -27.73001 -26.13768 -25.59330 -25.36524 -23.62930 -22.30624 -21.22026 -19.85502 -19.21544 -18.70883 -17.64804 -16.87244 -16.66443 -16.36573 -15.67182 -15.49345 -15.04980 -14.92824 -14.51473 -14.37488 -14.13824 -13.88050 -13.81800 -13.49722 -13.30825 -12.95923 -12.94519 -12.74336 -12.44958 -12.40027 -11.94813 -11.90265 -11.74765 -11.60747 -11.38689 -11.25306 -11.23053 -11.01381 -10.87296 -10.68539 -10.53651 -10.46682 -10.35916 -9.84850 -9.75942 -9.42499 -8.99878 -8.80620 -8.52178 -8.46717 -6.91197 -6.28525 -4.00015 1.84507 2.72873 2.94122 3.21486 3.33385 3.50892 3.60059 3.76448 4.19913 4.32028 4.33826 4.43754 4.55914 4.66338 4.68687 4.74576 4.81559 4.92848 4.98853 5.00326 5.08075 5.10588 5.13892 5.22982 5.37368 5.40071 5.41775 5.44729 5.46659 5.50522 5.56681 5.60529 5.63677 5.76357 5.79270 5.84564 5.95229 5.95561 6.01174 6.02829 6.07074 6.17908 6.20791 6.25369 6.33815 6.52818 6.66897 6.73099 7.47594 7.94633 8.42030 8.45957 9.17855 10.80719 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.002757 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.409141 B =10152.785741 C =11187.918108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.194 4.194 3 C 0.068 3.932 4 N -0.501 5.501 5 C 0.025 3.975 6 C -0.115 4.115 7 C -0.064 4.064 8 C 0.035 3.965 9 C -0.096 4.096 10 C -0.119 4.119 11 C -0.140 4.140 12 C 0.110 3.890 13 N -0.608 5.608 14 C 0.527 3.473 15 O -0.520 6.520 16 C -0.120 4.120 17 S -0.146 6.146 18 C -0.519 4.519 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 C 0.125 3.875 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.270 0.730 49 H 0.054 0.946 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 12.820 -24.807 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.214 4.214 3 C -0.060 4.060 4 N -0.223 5.223 5 C -0.103 4.103 6 C -0.153 4.153 7 C -0.066 4.066 8 C -0.093 4.093 9 C -0.133 4.133 10 C -0.156 4.156 11 C -0.179 4.179 12 C -0.014 4.014 13 N -0.343 5.343 14 C 0.315 3.685 15 O -0.394 6.394 16 C -0.270 4.270 17 S 0.081 5.919 18 C -0.667 4.667 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C 0.002 3.998 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.394 13.007 -24.780 27.990 hybrid contribution 0.449 -0.965 0.326 1.113 sum 0.843 12.042 -24.454 27.272 Atomic orbital electron populations 1.23913 0.95898 1.02106 0.99490 1.23539 0.96873 0.99831 1.01116 1.21514 0.95099 0.94556 0.94866 1.65761 1.08424 1.45855 1.02291 1.23357 0.94210 0.94810 0.97955 1.22443 0.97467 1.02236 0.93132 1.21263 0.95112 0.94987 0.95208 1.23527 0.95753 0.99621 0.90399 1.21097 0.97006 0.98094 0.97142 1.20456 0.96820 0.99025 0.99337 1.21272 1.02336 0.95093 0.99191 1.21521 0.81267 0.97042 1.01607 1.47579 1.09227 1.60840 1.16651 1.20543 0.87226 0.76704 0.84071 1.90674 1.15301 1.53091 1.80364 1.23341 1.03179 1.04461 0.96060 1.84791 1.15482 1.77428 1.14226 1.22302 0.97726 1.45842 1.00804 0.89402 1.24711 0.98333 0.93960 0.94310 1.69937 1.35589 1.40638 1.05577 0.86737 0.85364 0.81064 0.78700 1.19246 1.19976 1.15930 1.22007 0.97627 0.94302 0.85846 0.88426 0.88377 0.87449 0.90073 0.90029 0.90121 0.93419 0.89872 0.90910 0.92406 0.89851 0.91451 0.91525 0.91397 0.92857 0.90789 0.91352 0.89862 0.90595 0.88606 0.88434 0.91962 0.92776 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 14.30 29.01 0.42 -0.86 16 2 C -0.19 -1.44 6.81 -36.03 -0.25 -1.69 16 3 C 0.07 0.49 6.03 -4.97 -0.03 0.46 16 4 N -0.50 -4.13 5.65 -230.76 -1.30 -5.43 16 5 C 0.02 0.18 6.33 -1.69 -0.01 0.17 16 6 C -0.12 -0.88 4.61 -25.66 -0.12 -1.00 16 7 C -0.06 -0.59 0.62 -153.81 -0.09 -0.69 16 8 C 0.04 0.32 5.19 -1.93 -0.01 0.31 16 9 C -0.10 -0.93 4.53 -27.90 -0.13 -1.06 16 10 C -0.12 -1.05 4.82 -29.62 -0.14 -1.19 16 11 C -0.14 -1.39 5.60 -28.81 -0.16 -1.55 16 12 C 0.11 1.16 5.13 -4.34 -0.02 1.14 16 13 N -0.61 -8.11 2.43 -172.62 -0.42 -8.53 16 14 C 0.53 9.51 7.64 -10.78 -0.08 9.43 16 15 O -0.52 -11.27 15.11 5.56 0.08 -11.18 16 16 C -0.12 -2.34 4.61 36.01 0.17 -2.17 16 17 S -0.15 -3.71 18.55 -107.50 -1.99 -5.70 16 18 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 22 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 26 C 0.13 1.48 4.53 -2.84 -0.01 1.46 16 27 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 28 H 0.10 0.63 7.84 -52.49 -0.41 0.22 16 29 H 0.11 0.82 6.99 -52.48 -0.37 0.46 16 30 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 31 H 0.08 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.08 0.53 8.13 -52.01 -0.42 0.11 16 33 H 0.05 0.35 6.57 -52.16 -0.34 0.01 16 34 H 0.08 0.61 5.91 -52.02 -0.31 0.31 16 35 H 0.07 0.55 6.38 -51.94 -0.33 0.22 16 36 H 0.06 0.56 5.42 -51.90 -0.28 0.28 16 37 H 0.08 0.80 7.52 -51.99 -0.39 0.41 16 38 H 0.07 0.64 7.68 -51.79 -0.40 0.24 16 39 H 0.07 0.80 7.72 -51.86 -0.40 0.40 16 40 H 0.07 0.52 5.37 -52.53 -0.28 0.24 16 41 H 0.05 0.46 8.20 -51.39 -0.42 0.04 16 42 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.07 0.82 7.56 -51.85 -0.39 0.43 16 44 H 0.08 0.92 6.11 -51.85 -0.32 0.60 16 45 H 0.08 0.65 6.25 -52.07 -0.33 0.33 16 46 H 0.10 1.75 7.28 -51.92 -0.38 1.37 16 47 H 0.10 1.79 7.37 -51.92 -0.38 1.41 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.05 0.61 7.77 -51.83 -0.40 0.21 16 50 H 0.09 1.24 6.56 -51.91 -0.34 0.90 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -32.66 381.72 -10.22 -42.88 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.14 Total: 0.04 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -0.26 Total: -9.17 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: -0.95 Total: -39.77 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.66 -10.22 -42.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278327608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.176 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds