Wall clock time and date at job start Tue Mar 31 2020 20:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50690 * 120.00257 * 2 1 4 4 N 1.46912 * 109.47330 * 125.00130 * 3 2 1 5 5 C 1.48739 * 110.88362 * 69.87158 * 4 3 2 6 6 C 1.55109 * 103.17712 * 197.56207 * 5 4 3 7 7 C 1.52922 * 104.45593 * 31.45167 * 6 5 4 8 8 C 1.48419 * 111.12535 * 314.79838 * 4 3 2 9 9 C 1.50765 * 113.90166 * 231.35940 * 7 6 5 10 10 C 1.52908 * 111.05394 * 323.94358 * 9 7 6 11 11 C 1.47082 * 114.72349 * 276.72464 * 10 9 7 12 12 C 1.54455 * 110.69114 * 63.80819 * 11 10 9 13 13 N 1.44509 * 109.43392 * 287.53361 * 12 11 10 14 14 C 1.35234 * 118.19050 * 268.40775 * 13 12 11 15 15 O 1.21282 * 119.99874 * 180.25984 * 14 13 12 16 16 C 1.50704 * 120.00019 * 0.26645 * 14 13 12 17 17 S 1.80995 * 109.46836 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99746 * 180.02562 * 17 16 14 19 19 H 1.07991 * 119.99921 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99728 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99748 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00381 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46936 * 90.00176 * 22 20 18 24 24 H 1.48505 * 109.47116 * 210.00045 * 22 20 18 25 25 H 1.48497 * 109.47046 * 330.00233 * 22 20 18 26 26 C 1.47226 * 123.68522 * 88.69024 * 13 12 11 27 27 H 1.08002 * 120.00286 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.00067 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99440 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47356 * 5.00256 * 3 2 1 31 31 H 1.09000 * 109.47559 * 244.99993 * 3 2 1 32 32 H 1.08847 * 110.21175 * 79.88905 * 5 4 3 33 33 H 1.08595 * 111.02872 * 316.06978 * 5 4 3 34 34 H 1.08839 * 108.57254 * 272.00928 * 6 5 4 35 35 H 1.08980 * 110.12322 * 150.41020 * 6 5 4 36 36 H 1.09045 * 110.18336 * 38.19498 * 8 4 3 37 37 H 1.08893 * 111.07488 * 275.50284 * 8 4 3 38 38 H 1.09244 * 109.04105 * 84.21557 * 9 7 6 39 39 H 1.09119 * 109.41824 * 203.34357 * 9 7 6 40 40 H 1.07927 * 110.90903 * 40.94699 * 10 9 7 41 41 H 1.09939 * 107.26338 * 157.67081 * 10 9 7 42 42 H 1.09013 * 109.10869 * 184.26077 * 11 10 9 43 43 H 1.09141 * 108.89339 * 303.37879 * 11 10 9 44 44 H 1.09136 * 109.27749 * 167.70906 * 12 11 10 45 45 H 1.08744 * 109.87418 * 47.87930 * 12 11 10 46 46 H 1.08991 * 109.47007 * 299.99648 * 16 14 13 47 47 H 1.08995 * 109.46663 * 59.99993 * 16 14 13 48 48 H 0.96995 * 120.00247 * 179.97438 * 21 20 18 49 49 H 1.09177 * 108.92677 * 81.14055 * 26 13 12 50 50 H 1.09037 * 108.87028 * 199.09519 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9964 1.3318 1.1346 5 6 4.1125 0.3709 0.9262 6 6 4.7021 0.1995 2.3506 7 6 3.5031 0.3739 3.2836 8 6 2.3409 0.8543 2.3776 9 6 3.7273 1.3784 4.3853 10 6 5.1713 1.3315 4.8859 11 6 5.4423 0.2872 5.8856 12 6 5.2358 -1.1174 5.2772 13 7 3.8230 -1.3587 5.0929 14 6 3.1417 -1.9603 6.0942 15 8 1.9557 -2.1829 5.9725 16 6 3.8561 -2.3542 7.3614 17 16 2.6822 -3.1304 8.4995 18 6 3.7540 -3.4788 9.8539 19 1 4.7988 -3.2113 9.7984 20 6 3.2556 -4.0980 10.9918 21 7 4.0564 -4.3588 12.0034 22 14 1.4485 -4.5614 11.0876 23 1 1.2615 -5.9365 10.5593 24 1 0.9984 -4.5090 12.5018 25 1 0.6493 -3.6071 10.2779 26 6 3.0842 -0.9916 3.8735 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8499 -0.9354 -0.0004 30 1 1.3587 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 4.8583 0.7997 0.2594 33 1 3.7441 -0.5782 0.5483 34 1 5.4538 0.9704 2.5096 35 1 5.1352 -0.7945 2.4600 36 1 1.6688 0.0252 2.1538 37 1 1.7989 1.6607 2.8691 38 1 3.5132 2.3794 4.0038 39 1 3.0528 1.1629 5.2155 40 1 5.8609 1.2211 4.0630 41 1 5.3840 2.3004 5.3598 42 1 6.4710 0.3839 6.2329 43 1 4.7640 0.4218 6.7300 44 1 5.6471 -1.8676 5.9548 45 1 5.7447 -1.1834 4.3184 46 1 4.6534 -3.0587 7.1249 47 1 4.2823 -1.4666 7.8289 48 1 3.7082 -4.7911 12.7987 49 1 3.2487 -1.7596 3.1151 50 1 2.0187 -0.9588 4.1031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278327608.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:04 Heat of formation + Delta-G solvation = -24.218306 kcal Electronic energy + Delta-G solvation = -28265.231057 eV Core-core repulsion = 24611.282963 eV Total energy + Delta-G solvation = -3653.948094 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90191 -40.31450 -38.19275 -35.76480 -34.68328 -34.56080 -33.22073 -30.99498 -30.57944 -28.53955 -27.89961 -26.97708 -26.20965 -24.43908 -23.01210 -22.05942 -20.58502 -20.43393 -19.55316 -19.47886 -18.20976 -17.64245 -17.14572 -17.09582 -16.69203 -16.35391 -15.97933 -15.69230 -15.35196 -15.22718 -14.96878 -14.87475 -14.79676 -14.43401 -14.06811 -13.93244 -13.79681 -13.42600 -13.33610 -13.29948 -13.08216 -13.02445 -12.66742 -12.63256 -12.35109 -12.26114 -12.12595 -11.97676 -11.88401 -11.65609 -11.38361 -11.24964 -11.18321 -11.13377 -10.85914 -10.52529 -10.34182 -9.66902 -9.42434 -9.01203 -8.52175 -6.23058 0.96782 1.27376 1.29960 1.44545 1.49415 1.53887 2.06721 2.24183 2.68216 2.86027 3.11162 3.46332 3.50103 3.70620 3.72420 3.93065 3.98732 4.00446 4.11340 4.14249 4.20569 4.23837 4.34254 4.37165 4.40675 4.53000 4.62441 4.65271 4.66887 4.69652 4.78806 4.79571 4.86167 4.88438 4.98158 5.03297 5.11122 5.17459 5.23443 5.26745 5.32360 5.41071 5.55785 5.60827 5.66040 5.68083 5.70495 5.91553 6.07015 6.10961 6.24626 6.93160 7.08115 8.60194 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018858 B = 0.002757 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.409141 B =10152.785741 C =11187.918108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.197 4.197 3 C 0.069 3.931 4 N -0.505 5.505 5 C 0.025 3.975 6 C -0.111 4.111 7 C -0.054 4.054 8 C 0.038 3.962 9 C -0.093 4.093 10 C -0.117 4.117 11 C -0.136 4.136 12 C 0.100 3.900 13 N -0.590 5.590 14 C 0.526 3.474 15 O -0.564 6.564 16 C -0.103 4.103 17 S -0.180 6.180 18 C -0.525 4.525 19 H 0.063 0.937 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.239 1.239 26 C 0.126 3.874 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.277 0.723 49 H 0.065 0.935 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 13.726 -26.964 30.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.216 4.216 3 C -0.059 4.059 4 N -0.227 5.227 5 C -0.102 4.102 6 C -0.149 4.149 7 C -0.055 4.055 8 C -0.090 4.090 9 C -0.131 4.131 10 C -0.154 4.154 11 C -0.175 4.175 12 C -0.022 4.022 13 N -0.323 5.323 14 C 0.314 3.686 15 O -0.442 6.442 16 C -0.254 4.254 17 S 0.046 5.954 18 C -0.673 4.673 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.163 1.163 26 C 0.004 3.996 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.126 0.874 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.497 13.938 -26.963 30.389 hybrid contribution 0.216 -1.164 0.881 1.476 sum 1.713 12.774 -26.082 29.092 Atomic orbital electron populations 1.24028 0.96078 1.02488 0.99402 1.23563 0.96936 0.99928 1.01201 1.21540 0.95106 0.94311 0.94948 1.65772 1.08746 1.46100 1.02098 1.23408 0.94067 0.94777 0.97971 1.22438 0.96723 1.03063 0.92627 1.21181 0.96184 0.92956 0.95180 1.23429 0.95586 0.99026 0.91003 1.21056 0.97243 0.98470 0.96303 1.20441 0.96303 0.98852 0.99770 1.21253 1.02870 0.94807 0.98563 1.21846 0.79401 0.97532 1.03457 1.47575 1.10240 1.58745 1.15717 1.20299 0.86654 0.77210 0.84450 1.90659 1.16975 1.55419 1.81177 1.23303 1.01886 1.04692 0.95528 1.84731 1.17478 1.78428 1.14728 1.22420 0.97183 1.45505 1.02176 0.91853 1.25535 1.02289 0.93988 0.94080 1.70009 1.37476 1.41596 1.06318 0.85888 0.80537 0.80720 0.79359 1.18695 1.18294 1.16259 1.22127 0.96077 0.96335 0.85090 0.88449 0.87727 0.87702 0.90039 0.88831 0.88722 0.93375 0.88721 0.90133 0.93276 0.90666 0.90915 0.94450 0.89233 0.92352 0.88773 0.94001 0.90040 0.87435 0.87027 0.87283 0.91358 0.91695 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 14.30 67.78 0.97 -1.53 16 2 C -0.20 -2.70 6.81 25.64 0.17 -2.52 16 3 C 0.07 0.86 6.03 85.55 0.52 1.38 16 4 N -0.51 -7.23 5.65 -883.99 -4.99 -12.22 16 5 C 0.03 0.29 6.33 86.67 0.55 0.84 16 6 C -0.11 -1.32 4.61 31.29 0.14 -1.17 16 7 C -0.05 -0.89 0.62 -51.73 -0.03 -0.92 16 8 C 0.04 0.65 5.19 86.69 0.45 1.10 16 9 C -0.09 -1.68 4.53 29.84 0.14 -1.55 16 10 C -0.12 -1.74 4.82 28.72 0.14 -1.60 16 11 C -0.14 -2.40 5.60 29.25 0.16 -2.24 16 12 C 0.10 1.87 5.13 87.25 0.45 2.32 16 13 N -0.59 -15.09 2.43 -818.17 -1.99 -17.08 16 14 C 0.53 18.97 7.64 87.59 0.67 19.64 16 15 O -0.56 -24.92 15.11 -3.04 -0.05 -24.97 16 16 C -0.10 -4.02 4.61 71.24 0.33 -3.69 16 17 S -0.18 -9.27 18.55 -56.49 -1.05 -10.32 16 18 C -0.53 -30.72 10.04 67.95 0.68 -30.03 16 19 H 0.06 3.89 8.03 -2.92 -0.02 3.87 16 20 C 0.05 2.74 5.50 84.86 0.47 3.21 16 21 N -0.92 -55.87 13.97 21.65 0.30 -55.56 16 22 Si 0.91 45.40 27.74 68.60 1.90 47.30 16 23 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 26 C 0.13 2.86 4.53 86.76 0.39 3.25 16 27 H 0.10 1.32 8.06 -2.91 -0.02 1.29 16 28 H 0.10 1.27 7.84 -2.91 -0.02 1.25 16 29 H 0.11 1.48 6.99 -2.91 -0.02 1.46 16 30 H 0.08 1.02 7.79 -2.39 -0.02 1.00 16 31 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 32 H 0.09 0.88 8.13 -2.47 -0.02 0.86 16 33 H 0.05 0.57 6.57 -2.60 -0.02 0.55 16 34 H 0.09 0.96 5.91 -2.47 -0.01 0.95 16 35 H 0.08 0.87 6.38 -2.40 -0.02 0.86 16 36 H 0.05 0.93 5.42 -2.36 -0.01 0.92 16 37 H 0.07 1.41 7.52 -2.44 -0.02 1.39 16 38 H 0.07 1.26 7.68 -2.26 -0.02 1.24 16 39 H 0.04 0.90 7.72 -2.32 -0.02 0.88 16 40 H 0.09 0.99 5.37 -2.95 -0.02 0.98 16 41 H 0.06 0.85 8.20 -1.89 -0.02 0.83 16 42 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.04 0.97 7.56 -2.31 -0.02 0.95 16 44 H 0.08 1.60 6.11 -2.32 -0.01 1.59 16 45 H 0.11 1.40 6.25 -2.52 -0.02 1.39 16 46 H 0.11 3.98 7.28 -2.40 -0.02 3.96 16 47 H 0.11 3.98 7.37 -2.40 -0.02 3.96 16 48 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 49 H 0.06 1.36 7.77 -2.29 -0.02 1.34 16 50 H 0.06 1.76 6.56 -2.37 -0.02 1.75 16 Total: -1.00 -71.80 381.72 1.21 -70.59 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.89 Total: 15.77 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 6.20 Total: -13.51 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -6.68 Total: -84.86 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.30 kcal Atomic # 16 Polarization: -9.27 SS G_CDS: -1.05 Total: -10.32 kcal Total: -71.80 1.21 -70.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278327608.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.368 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds