Wall clock time and date at job start Tue Mar 31 2020 22:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47384 * 2 1 4 4 C 1.53002 * 109.47104 * 120.00458 * 2 1 3 5 5 C 1.50706 * 109.46657 * 294.99610 * 4 2 1 6 6 C 1.38250 * 119.97322 * 90.00389 * 5 4 2 7 7 C 1.38193 * 120.02211 * 179.74633 * 6 5 4 8 8 C 1.38461 * 119.97663 * 0.24847 * 7 6 5 9 9 F 1.35105 * 120.02137 * 180.02562 * 8 7 6 10 10 C 1.38455 * 119.94921 * 0.02562 * 8 7 6 11 11 C 1.38203 * 119.97330 * 0.02562 * 10 8 7 12 12 C 1.50702 * 109.46942 * 239.99712 * 2 1 3 13 13 O 1.21282 * 119.99991 * 245.48649 * 12 2 1 14 14 N 1.34782 * 119.99685 * 65.49468 * 12 2 1 15 15 C 1.46498 * 120.00012 * 4.91794 * 14 12 2 16 16 C 1.46499 * 119.99848 * 184.92342 * 14 12 2 17 17 C 1.53003 * 109.47215 * 89.99481 * 16 14 12 18 18 H 1.08998 * 109.46865 * 60.00209 * 17 16 14 19 19 O 1.42897 * 109.47006 * 299.99767 * 17 16 14 20 20 C 1.53000 * 109.46825 * 180.02562 * 17 16 14 21 21 N 1.46499 * 109.46895 * 185.00046 * 20 17 16 22 22 C 1.36943 * 119.99903 * 179.97438 * 21 20 17 23 23 H 1.07993 * 119.99987 * 0.02562 * 22 21 20 24 24 C 1.38815 * 119.99635 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00108 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99825 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47020 * 90.00152 * 26 24 22 28 28 H 1.48493 * 109.47322 * 210.00480 * 26 24 22 29 29 H 1.48499 * 109.47103 * 330.00255 * 26 24 22 30 30 H 1.08997 * 109.47367 * 190.12148 * 1 2 3 31 31 H 1.09004 * 109.47377 * 310.11912 * 1 2 3 32 32 H 1.09005 * 109.47209 * 70.11962 * 1 2 3 33 33 H 1.09000 * 109.47227 * 175.00428 * 4 2 1 34 34 H 1.08997 * 109.47715 * 54.99447 * 4 2 1 35 35 H 1.08001 * 119.98747 * 0.02562 * 6 5 4 36 36 H 1.08003 * 120.00862 * 180.27318 * 7 6 5 37 37 H 1.08000 * 120.01117 * 179.97438 * 10 8 7 38 38 H 1.08002 * 119.98128 * 180.02562 * 11 10 8 39 39 H 1.08997 * 109.46855 * 95.86238 * 15 14 12 40 40 H 1.08998 * 109.47115 * 215.85751 * 15 14 12 41 41 H 1.08994 * 109.47233 * 335.85744 * 15 14 12 42 42 H 1.08995 * 109.47355 * 210.00037 * 16 14 12 43 43 H 1.08998 * 109.47033 * 329.99794 * 16 14 12 44 44 H 0.96693 * 114.00327 * 299.99556 * 19 17 16 45 45 H 1.09003 * 109.47495 * 305.00143 * 20 17 16 46 46 H 1.08996 * 109.47861 * 65.00302 * 20 17 16 47 47 H 0.97003 * 120.00406 * 0.02562 * 21 20 17 48 48 H 0.97004 * 119.99712 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0570 2.4766 6 6 0.4353 -0.2055 3.0994 7 6 0.0711 0.5040 4.2280 8 6 0.9122 1.4816 4.7319 9 9 0.5573 2.1755 5.8355 10 6 2.1172 1.7475 4.1040 11 6 2.4789 1.0375 2.9749 12 6 2.0323 -0.7105 -1.2305 13 8 2.6453 -1.7513 -1.1219 14 7 1.8004 -0.1891 -2.4515 15 6 1.1557 1.1203 -2.5785 16 6 2.1930 -0.9317 -3.6517 17 6 1.0368 -1.8295 -4.0969 18 1 0.1644 -1.2150 -4.3190 19 8 0.7179 -2.7492 -3.0508 20 6 1.4471 -2.6056 -5.3500 21 7 0.3023 -3.3739 -5.8452 22 6 0.4321 -4.1508 -6.9655 23 1 1.3785 -4.1973 -7.4836 24 6 -0.6526 -4.8792 -7.4344 25 7 -1.8058 -4.8228 -6.8025 26 14 -0.4754 -5.9394 -8.9621 27 1 -0.0447 -7.3053 -8.5695 28 1 -1.7806 -6.0152 -9.6661 29 1 0.5400 -5.3406 -9.8652 30 1 -0.3634 -1.0116 0.1806 31 1 -0.3634 0.6622 0.7859 32 1 -0.3634 0.3495 -0.9665 33 1 3.1263 -0.7995 1.2056 34 1 1.6054 -1.7199 1.2952 35 1 -0.2204 -0.9684 2.7064 36 1 -0.8691 0.2957 4.7169 37 1 2.7738 2.5101 4.4960 38 1 3.4190 1.2445 2.4852 39 1 1.9178 1.8907 -2.6950 40 1 0.5024 1.1205 -3.4510 41 1 0.5671 1.3237 -1.6839 42 1 2.4364 -0.2303 -4.4496 43 1 3.0654 -1.5462 -3.4296 44 1 1.4497 -3.3296 -2.8006 45 1 1.7756 -1.9065 -6.1191 46 1 2.2627 -3.2860 -5.1053 47 1 -0.5479 -3.3318 -5.3800 48 1 -2.5637 -5.3321 -7.1300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278839314.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:38 Heat of formation + Delta-G solvation = -95.610216 kcal Electronic energy + Delta-G solvation = -29027.783181 eV Core-core repulsion = 24804.526125 eV Total energy + Delta-G solvation = -4223.257055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.21574 -40.50673 -39.41277 -37.37731 -35.39449 -35.00348 -33.96893 -31.55525 -31.41912 -30.93059 -29.22518 -27.20165 -26.67020 -25.65296 -23.70811 -23.28434 -22.47272 -21.33013 -21.00472 -19.06079 -18.00891 -17.39614 -17.13617 -16.69224 -16.59558 -15.93473 -15.82735 -15.67326 -15.34433 -15.06283 -14.71739 -14.40417 -14.35073 -13.92835 -13.78809 -13.66500 -13.58290 -13.18115 -12.96008 -12.76185 -12.68762 -12.48603 -12.35194 -12.15487 -12.01364 -11.68446 -11.48688 -11.44263 -11.28579 -11.12380 -10.92880 -10.80703 -10.63096 -10.15208 -9.85373 -9.74335 -9.53214 -9.45855 -8.88267 -8.88007 -8.49829 -6.90528 -5.73798 -3.03039 0.75311 0.84914 2.62445 2.92745 3.22013 3.44634 3.49260 3.51169 3.90736 4.19928 4.32806 4.51013 4.55288 4.58550 4.69223 4.74642 4.88242 4.89851 4.91722 4.98227 5.01599 5.11035 5.24453 5.36460 5.41422 5.44513 5.49649 5.55856 5.58121 5.61561 5.68095 5.69652 5.74969 5.76297 5.85226 5.92939 6.01268 6.02993 6.21943 6.25374 6.45704 6.52262 6.54477 6.75861 7.34057 7.70111 8.16378 8.20468 8.44585 9.55818 10.13969 10.49578 11.48630 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026590 B = 0.001883 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.779663 B =14867.533553 C =15294.970843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 H 0.093 0.907 4 C -0.062 4.062 5 C -0.086 4.086 6 C -0.084 4.084 7 C -0.152 4.152 8 C 0.090 3.910 9 F -0.143 7.143 10 C -0.152 4.152 11 C -0.089 4.089 12 C 0.525 3.475 13 O -0.536 6.536 14 N -0.608 5.608 15 C 0.063 3.937 16 C 0.083 3.917 17 C 0.087 3.913 18 H 0.095 0.905 19 O -0.548 6.548 20 C 0.126 3.874 21 N -0.725 5.725 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.930 5.930 26 Si 0.908 3.092 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.373 0.627 45 H 0.024 0.976 46 H 0.021 0.979 47 H 0.388 0.612 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.658 17.994 21.566 29.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.123 4.123 3 H 0.111 0.889 4 C -0.100 4.100 5 C -0.086 4.086 6 C -0.102 4.102 7 C -0.170 4.170 8 C 0.070 3.930 9 F -0.122 7.122 10 C -0.171 4.171 11 C -0.107 4.107 12 C 0.313 3.687 13 O -0.413 6.413 14 N -0.341 5.341 15 C -0.080 4.080 16 C -0.040 4.040 17 C 0.026 3.974 18 H 0.113 0.887 19 O -0.353 6.353 20 C -0.003 4.003 21 N -0.370 5.370 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.579 5.579 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.221 0.779 45 H 0.042 0.958 46 H 0.039 0.961 47 H 0.222 0.778 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.456 17.694 21.467 28.801 hybrid contribution 0.186 -0.545 -0.625 0.850 sum 7.642 17.149 20.843 28.051 Atomic orbital electron populations 1.22042 0.92537 1.03506 1.02980 1.21238 0.98030 1.00435 0.92619 0.88922 1.20435 1.02203 0.98393 0.88934 1.19997 0.94512 0.96854 0.97232 1.21030 0.96042 0.98968 0.94156 1.21178 1.00598 0.96992 0.98268 1.17750 0.95332 0.94169 0.85704 1.91499 1.92044 1.77829 1.50783 1.21138 0.96106 1.02364 0.97508 1.20955 0.99758 0.94813 0.95131 1.20442 0.78859 0.85130 0.84227 1.90665 1.40721 1.23597 1.86312 1.47637 1.60734 1.19770 1.05920 1.22121 0.97938 0.83918 1.04046 1.22249 0.98996 0.96155 0.86609 1.22469 0.97105 0.90153 0.87631 0.88743 1.86529 1.42234 1.51615 1.54945 1.21239 0.92164 0.93929 0.92952 1.42247 1.09414 1.53770 1.31547 1.19227 0.96373 1.19470 1.02259 0.91272 1.24764 0.95851 1.00866 0.99510 1.69683 1.01294 1.45502 1.41377 0.86179 0.76692 0.80557 0.82684 1.21707 1.21760 1.20794 0.91375 0.91490 0.91012 0.89996 0.89601 0.84728 0.84748 0.84857 0.85000 0.92690 0.90925 0.89647 0.89783 0.89422 0.77926 0.95840 0.96132 0.77773 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 7.91 37.16 0.29 -0.96 16 2 C -0.10 -0.88 1.88 -91.77 -0.17 -1.05 16 3 H 0.09 0.64 7.73 -51.93 -0.40 0.24 16 4 C -0.06 -0.53 4.13 -27.88 -0.12 -0.65 16 5 C -0.09 -0.65 4.73 -104.61 -0.49 -1.14 16 6 C -0.08 -0.62 8.24 -39.59 -0.33 -0.94 16 7 C -0.15 -1.15 10.03 -39.52 -0.40 -1.54 16 8 C 0.09 0.75 7.30 -39.42 -0.29 0.46 16 9 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 10 C -0.15 -1.10 10.03 -39.51 -0.40 -1.50 16 11 C -0.09 -0.61 9.70 -39.59 -0.38 -0.99 16 12 C 0.53 6.37 6.41 -10.98 -0.07 6.30 16 13 O -0.54 -8.28 14.68 3.60 0.05 -8.23 16 14 N -0.61 -6.81 2.83 -181.58 -0.51 -7.32 16 15 C 0.06 0.49 9.72 59.85 0.58 1.07 16 16 C 0.08 1.06 5.20 -4.04 -0.02 1.04 16 17 C 0.09 1.43 3.27 -26.73 -0.09 1.34 16 18 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 19 O -0.55 -10.07 12.20 -37.19 -0.45 -10.52 16 20 C 0.13 2.52 5.90 -4.04 -0.02 2.49 16 21 N -0.73 -18.86 5.55 -59.91 -0.33 -19.19 16 22 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 26 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 30 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.07 0.45 6.96 -51.93 -0.36 0.09 16 32 H 0.07 0.60 5.41 -51.93 -0.28 0.32 16 33 H 0.08 0.74 7.98 -51.93 -0.41 0.32 16 34 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 35 H 0.13 0.85 8.04 -52.49 -0.42 0.43 16 36 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 41 H 0.09 0.55 4.12 -51.93 -0.21 0.34 16 42 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 43 H 0.09 1.20 7.36 -51.93 -0.38 0.82 16 44 H 0.37 6.51 8.62 45.56 0.39 6.90 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.39 10.86 7.67 -40.82 -0.31 10.55 16 48 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -34.36 395.49 -8.27 -42.64 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -6.58 Total: 11.99 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.15 Total: -3.64 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.12 Total: -54.59 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.40 Total: -18.75 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.36 -8.27 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278839314.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.972 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds